KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:42 2014 Check: 00 .. Name: BACU004085/1-581 Len: 581 Check: 7499 Weight: 1.00 Name: ENSTTRP00000006941/1-287 Len: 581 Check: 6010 Weight: 1.00 Name: ENSP00000413049/1-157 Len: 581 Check: 735 Weight: 1.00 Name: bmy_03826T0/1-287 Len: 581 Check: 1590 Weight: 1.00 Name: ENSBTAP00000032026/1-311 Len: 581 Check: 1820 Weight: 1.00 // 1 50 BACU004085/1-581 MTPGDEGLDN WSLVSQWLLK KKRKTRLTEM KELAQGPSTG RAHPETQLWE ENSTTRP00000006941/1-287 --MGNFQLED F--VAGWI-- ---------- ---------- ---------- ENSP00000413049/1-157 --MGSFQLED F--AAGWI-- ---------- ---------- ---------- bmy_03826T0/1-287 --MGNFQLED F--VAGWI-- ---------- ---------- ---------- ENSBTAP00000032026/1-311 --MGNFQLED F--VAGWI-- ---------- ---------- ---------- 51 100 BACU004085/1-581 DYLASAQGRR GRDALDFLLN YHKMCSGDNM LLKTRNDQQR GPAAQTSQKS ENSTTRP00000006941/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000413049/1-157 ---------- ---------- ---------- ---------- ---------- bmy_03826T0/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032026/1-311 ---------- ---------- ---------- ---------- ---------- 101 150 BACU004085/1-581 CEAEPRVLPS ESLLQEDDPE PPSRQLQATG SRDSEPRSNL DLSHGPLVAL ENSTTRP00000006941/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000413049/1-157 ---------- ---------- ---------- ---------- ---------- bmy_03826T0/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032026/1-311 ---------- ---------- ---------- ---------- ---------- 151 200 BACU004085/1-581 EYLPFFRTYG QLLAEEELAL RPEVCRDRGG DQSIREEFPE PPSGFFPHYR ENSTTRP00000006941/1-287 ---------- ---------- --------GG AASVIVGHP- ---------- ENSP00000413049/1-157 ---------- ---------- --------GG AASVIVGHP- ---------- bmy_03826T0/1-287 ---------- ---------- --------GG AASVIVGHP- ---------- ENSBTAP00000032026/1-311 ---------- ---------- --------GG AASVIVGHP- ---------- 201 250 BACU004085/1-581 SKEESFPSLA FPGRWCAGSR DPPTRRALQA GCCCRVTVSG RCSARLQAGT ENSTTRP00000006941/1-287 ---------- ---------- ---------- --------LD TVKARLQAGT ENSP00000413049/1-157 ---------- ---------- ---------- --------LD TVKTRLQAGV bmy_03826T0/1-287 ---------- ---------- ---------- --------LD TVK------- ENSBTAP00000032026/1-311 ---------- ---------- ---------- --------LD TVKARLQAGS 251 300 BACU004085/1-581 GYGSTLSCIR TVYRRESVFG FFKGMAFPLA SIAVYNSVVF GVFSNTQRFL ENSTTRP00000006941/1-287 GYGSTLRCIR TVYRRESVFG FFKGMAFPLT SIAVYNSVVF GVFSNTQRFL ENSP00000413049/1-157 GYGNTLSCIR VVYRRESMFG FFKGMSFPLA SIAVYNSVVF GVFSNTQRFL bmy_03826T0/1-287 ---------- -------VFG FFKGMAFPLA SIAVYNSVVF GVFSNTQRFL ENSBTAP00000032026/1-311 GYGSTLSCIR TVYRRESVFG FFKGMSFPLA SIAVYNSVVF GVFSNTQRFL 301 350 BACU004085/1-581 SHHRCQEPEA GSPRVLSDLL LASMVAGVVS VGLGAPVDLI KIRLQMQTQP ENSTTRP00000006941/1-287 SHHRCQEPEA GSPRVLSDLL LASMVAGVVS VGLGAPVDLI KIRLQMQTQP ENSP00000413049/1-157 SQHRCGEPEA SPPRTLSDLL LASMVAGVVS VGLGGPVDLI KIRLQMQTQP bmy_03826T0/1-287 SHHRCQEPEA GSPRVLSDLL LASMVAGVVS VGLGAPVDLI KIRLQMQTQP ENSBTAP00000032026/1-311 SHHRCQEPEA GPPHVLSDLL LASMVAGVVS VGLGAPVDLI KIRLQMQTQP 351 400 BACU004085/1-581 FREANLGLKN RVAALGEQPA YQGPVHCIIT IVRTEGLAGL YRGASAMLLR ENSTTRP00000006941/1-287 FREANLGLKP RVAALGEQPA YQGPVHCIIT IVRTEGLAGL YRGASAMLLR ENSP00000413049/1-157 FRD---GGEH RMTTV----- FPGPHLCM-- ---------- ---------- bmy_03826T0/1-287 FREANLGLKP RVAALGEQPA YQGPVHCIIT IVRTEGLAGL YRGASAMLLR ENSBTAP00000032026/1-311 FQEANLGLKP RVAALGEQPA YQGPVHCFAT IVRTEGLAGL YRGASAMLLR 401 450 BACU004085/1-581 DVPGYCLYFI PYVFLSDWIT PEAHTGPSPC AVWLAGGMAG AISWGTATPM ENSTTRP00000006941/1-287 DVPGYCLYFI PYLFLSDWIT PEAHTGPSTC AVWLAGGMAG K---GGGIPA ENSP00000413049/1-157 ---------- ---------- ---------- ---------- ---------- bmy_03826T0/1-287 DVPGYCLYFI PYVFLSDWIT PEAHTGPSPC AVWLAGGMAG AISWGTATPM ENSBTAP00000032026/1-311 DVPGYCLYFI PYVFLSDWIT PEACAGPSPC AVWLAGGMAG AISWGTATPM 451 500 BACU004085/1-581 DVVKSRLQAD GVYVNKYKGV LDCISQSYQK EGLKVSPTAV MQGQCQSLEV ENSTTRP00000006941/1-287 PVLTMAARQL GSYHTLLSPG EGQGSSSHS- ---------- ---------- ENSP00000413049/1-157 ---------- ---------- ---------- ---------- ---------- bmy_03826T0/1-287 DVVKSRLQAD GVYVNKYKGV LDCISQSYQK EGLKV----- ---------- ENSBTAP00000032026/1-311 DVVKSRLQAD GVYVNKYRGV LDCMSQSYQK EGLKV----- ---------- 501 550 BACU004085/1-581 QDHFSMSLNL QLQSGFHAKA SQIPESLDAC LSHGTLPLVA TLVIGYFRRK ENSTTRP00000006941/1-287 ---------- ---------- ---------- ------SNNS LLSTCYGPSH ENSP00000413049/1-157 ---------- ---------- ---------- ---------- ---------- bmy_03826T0/1-287 ---FFRGITV NAVRGF---- ---------- ------PMSA AMFLGYELSL ENSBTAP00000032026/1-311 ---FFRGITV NAVRGF---- ---------- ------PMSA AMFLGYELSL 551 600 BACU004085/1-581 EGVSSKPNPD CPGFGLSEQC PNWKLFLLKV L ENSTTRP00000006941/1-287 PPSFSHPFSL ---------- ---------- - ENSP00000413049/1-157 ---------- ---------- ---------- - bmy_03826T0/1-287 QAIRGDHVAT SP-------- ---------- - ENSBTAP00000032026/1-311 QAIRGDHVVT SP-------- ---------- -