KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:43 2014 Check: 00 .. Name: ENSTTRP00000002371/1-1509 Len: 1518 Check: 4046 Weight: 1.00 Name: ENSP00000393099/1-1514 Len: 1518 Check: 2955 Weight: 1.00 Name: ENSBTAP00000032032/1-1504 Len: 1518 Check: 6878 Weight: 1.00 Name: bmy_09151T0/1-1450 Len: 1518 Check: 8216 Weight: 1.00 Name: BACU008503/1-1512 Len: 1518 Check: 3550 Weight: 1.00 // 1 50 ENSTTRP00000002371/1-1509 -MAVEGSTIT SRIKNLLRSP SIKLRRSKAG NRREDLSSKV TLEKVLGITV ENSP00000393099/1-1514 -MAVEGSTIT SRIKNLLRSP SIKLRRSKAG NRREDLSSKV TLEKVLGITV ENSBTAP00000032032/1-1504 MMAVEGSTIT SRIKNLLRSP SIKLRRSKAG NRREDLSSKV TLEKVLGITV bmy_09151T0/1-1450 ---------- ---------- ---------- ---------- ---------- BACU008503/1-1512 MMAVEGSTIT SRIKNLLRSP SIKLRRSKAG NRREDLSSKV TLEKVLGITV 51 100 ENSTTRP00000002371/1-1509 SGGRGLACDP RSGLVAYPAG CVVVLFNPRK HKQHHILNSS RKTITALAFS ENSP00000393099/1-1514 SGGRGLACDP RSGLVAYPAG CVVVLFNPRK HKQHHILNSS RKTITALAFS ENSBTAP00000032032/1-1504 SGGRGLACDP RSGLVAYPAG CVVVLFNPRK HKQHHILNSS RKTITALAFS bmy_09151T0/1-1450 ------TC-- ----LTHLPR CVVVLFNPRK HKQHHILNSS RKTITALAFS BACU008503/1-1512 SGGRGLACDP RSGLVAYPAG CVVVLFNPRK HKQHHILNSS RKTITALAFS 101 150 ENSTTRP00000002371/1-1509 PDGKYLVTGE SGHMPAVRVW DVAEHSQVAE LQEHKYGVAC VAFSPSAKYI ENSP00000393099/1-1514 PDGKYLVTGE SGHMPAVRVW DVAEHSQVAE LQEHKYGVAC VAFSPSAKYI ENSBTAP00000032032/1-1504 PDGKYLVTGE SGHMPAVRVW DVAEHSQVAE LQEHKYGVAC VAFSPSAKYI bmy_09151T0/1-1450 PDGKYLVTGE SGHMPAVRVW DVAEHSQVAE LQEHKYGVAC VAFSPSAKYI BACU008503/1-1512 PDGKYLVTGE SGHMPAVRVW DVAEHSQVAE LQEHKYGVAC VAFSPSAKYI 151 200 ENSTTRP00000002371/1-1509 VSVGYQHDMI VNVWAWKKNI VVASNKVSSR VTAVSFSEDC SYFVTAGNRH ENSP00000393099/1-1514 VSVGYQHDMI VNVWAWKKNI VVASNKVSSR VTAVSFSEDC SYFVTAGNRH ENSBTAP00000032032/1-1504 VSVGYQHDMI VNVWAWKKNI VVASNKVSSR VTAVSFSEDC SYFVTAGNRH bmy_09151T0/1-1450 VSVGYQHDMI VNVWAWKKNI VVASNKVSSR VTAVSFSEDC SYFVTAGNRH BACU008503/1-1512 VSVGYQHDMI VNVWAWKKNV VVASNKVSSR VTAVSFSEDC SYFVTAGNRH 201 250 ENSTTRP00000002371/1-1509 IKFWYLDDSK TSKVNATVPL LGRSGLLGEL RNNLFTDVAC GRGRKADSTF ENSP00000393099/1-1514 IKFWYLDDSK TSKVNATVPL LGRSGLLGEL RNNLFTDVAC GRGKKADSTF ENSBTAP00000032032/1-1504 IKFWYLDDSK TSKVNATVPL LGRSGLLGEL RNNLFTDVAC GRGKKADSTF bmy_09151T0/1-1450 IKFWYLDDSK TSKVNATVPL LGRSGLLGEL RNNLFTDVAC GRGRKADSTF BACU008503/1-1512 IKFWYLDDSK TSKVNATVPL LGRSGLLGEL RNNLFTDVAC GRGRKADSTF 251 300 ENSTTRP00000002371/1-1509 CITSSGLLCE FSDRRLLDKW VELRNTDSFT TTVAYCISVS QDYIFCGCAD ENSP00000393099/1-1514 CITSSGLLCE FSDRRLLDKW VELRNIDSFT TTVAHCISVS QDYIFCGCAD ENSBTAP00000032032/1-1504 CITSSGLLCE FSDRRLLDKW VELR------ TTVAHCISVS QDYIFCGCAD bmy_09151T0/1-1450 CITSSGLLCE FSDRRLLDKW VELRNTDSFT TTVAHCISVS QDYIFCGCAD BACU008503/1-1512 CITSSGLLCE FSDRRLLDKW VELRNTDSFT TTVAHCISVS QDYIFCGCAD 301 350 ENSTTRP00000002371/1-1509 GTVRLFNPSN LHFLSTLPRP HALGTDIASV TEASRLFSGV ANARYPDTIA ENSP00000393099/1-1514 GTVRLFNPSN LHFLSTLPRP HALGTDIASV TEASRLFSGV ANARYPDTIA ENSBTAP00000032032/1-1504 GTVRLFNPSN LHFLSTLPRP HALGTDIASV TEASRLFSGA ANARYPDTIA bmy_09151T0/1-1450 GTVRLFNPSN LHFLSTLPRP HALGTDIASV TEASRLFSGV ANARYPDTIA BACU008503/1-1512 GTVRLFNPSN LHFLSTLPRP HALGTDIASV TEASRLFSGV ANARYPDTIA 351 400 ENSTTRP00000002371/1-1509 LTFDPTNQWL SCVYNDHSIY VWDVRDPKKV GKVYSALYHS SCVWSVEVYP ENSP00000393099/1-1514 LTFDPTNQWL SCVYNDHSIY VWDVRDPKKV GKVYSALYHS SCVWSVEVYP ENSBTAP00000032032/1-1504 LTFDPTNQWL SCVYNDHSIY VWDVRDPKKV GKVYSALYHS SCVWSVEVYP bmy_09151T0/1-1450 LTFDPTNQWL SCVYNDHSIY VWDVRDPKKV GKVYSALYHS SCVWSVEVYP BACU008503/1-1512 LTFDPTNQWL SCVYNDHSIY VWDVRDPKKV GKVYSALYHS SCVWSVEVYP 401 450 ENSTTRP00000002371/1-1509 EVKDSNQACL PPSSFITCSS DNTIRLWNTE SSGVHGSTLH RNILSNDLIK ENSP00000393099/1-1514 EVKDSNQACL PPSSFITCSS DNTIRLWNTE SSGVHGSTLH RNILSSDLIK ENSBTAP00000032032/1-1504 EVKDSNQACL PPSSFITCSS DNTIRLWNTE SSGVHGSTLH RNILSNDLIK bmy_09151T0/1-1450 EVKDSNQACL PPSSFITCSS DNTIRLWNTE SSGVHGSTLH RNILSNDLIK BACU008503/1-1512 EVKDSNQACL PPSSFITCSS DNTIRLWNTE SSGVHGSTLH RNILSNDLIK 451 500 ENSTTRP00000002371/1-1509 IIYVDGNTQA LLDTELPGGD KADGSLMDPR VGIRSVCISP NGQHLASGDR ENSP00000393099/1-1514 IIYVDGNTQA LLDTELPGGD KADASLLDPR VGIRSVCVSP NGQHLASGDR ENSBTAP00000032032/1-1504 IIYVDGNTQA LLDTELPGGD KADGSLMDPR VGIRSVCISP NGQHLASGDR bmy_09151T0/1-1450 IIYVDGNTQA LLDTELPGGD KADGSLMDPR VGIRSVCISP NGQHLASGDR BACU008503/1-1512 IIYVDGNTQA LLDTELPGGD KADGSLVDPR VGIRSVCISP NGQHLASGDR 501 550 ENSTTRP00000002371/1-1509 VGTLRVHELQ SLNEMLKVDA HDSEILCLEY SKPDTGLKLL ASASRDRLIH ENSP00000393099/1-1514 MGTLRVHELQ SLSEMLKVEA HDSEILCLEY SKPDTGLKLL ASASRDRLIH ENSBTAP00000032032/1-1504 VGTLRVHELQ SLNEMLKVEA HDSEILCLEY SKPDTGLKLL ASASRDRLIH bmy_09151T0/1-1450 VGTLRVHELQ SLNEMLKVEA HDSEILCLEY SKPDTGLKLL ASASRDRLIH BACU008503/1-1512 VGTLRVHELQ SLNEMLKVEA HDSEILCLEY SKPDTGLKLL ASASRDRLIH 551 600 ENSTTRP00000002371/1-1509 VLDAGREYSL QQTLDEHSSS ITAVKFAASD GQVRMISCGA DKSIYFRTAQ ENSP00000393099/1-1514 VLDAGREYSL QQTLDEHSSS ITAVKFAASD GQVRMISCGA DKSIYFRTAQ ENSBTAP00000032032/1-1504 VLDAGREYSL QQTLDEHSSS ITAVKFAASD GQVRMISCGA DKSIYFRTAQ bmy_09151T0/1-1450 VLDAGREYSL QQTLDEHSSS ITAVKFAASD GQVRMISCGA DKSIYFRTAQ BACU008503/1-1512 VLDAGREYSL QQTLDEHSSS ITAVKFAASD GQVRMISCGA DKSIYFRTAQ 601 650 ENSTTRP00000002371/1-1509 KSGDGVQFTR THHVVRKTTL YDMDVEPSWK YTAIGCQDRN IRXXXXXXXX ENSP00000393099/1-1514 KSGDGVQFTR THHVVRKTTL YDMDVEPSWK YTAIGCQDRN IRIFNISSGK ENSBTAP00000032032/1-1504 KSGDGVQFTR THHVVRKTTL YDMDVEPSWK YTAIGCQDRN IRIFNISSGK bmy_09151T0/1-1450 KSGDGVQFTR THHVVRKTTL YDMDVEPSWK YTAIGCQDRN IRIFNISSGK BACU008503/1-1512 KSGDGVQFTR THHVVRKTTL YDMDVEPSWK YTAIGCQDRN IRIFNISSGK 651 700 ENSTTRP00000002371/1-1509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000393099/1-1514 QKKLFKGSQG EDGTLIKVQT DPSGIYIATS CSDKNLSIFD FSSGECVATM ENSBTAP00000032032/1-1504 QKKLFKGSQG EDGTLIKVQT DPSGIYIATS CSDKNLSIFD FSSGECVATM bmy_09151T0/1-1450 QKKLFKGSQG EDGTLIKVQT DPSGIYIATS CSDKNLSIFD FSSGECVATM BACU008503/1-1512 QKKLYKGSQG EDGTLIKVQT DPSGIYIATS CSDKNLSIFD FSSGECVATM 701 750 ENSTTRP00000002371/1-1509 XXXXXIVTGM KFSNDCKHLI SVSGDSCIFV WRLSSEMTIS MRQRLADLRQ ENSP00000393099/1-1514 FGHSEIVTGM KFSNDCKHLI SVSGDSCIFV WRLSSEMTIS MRQRLAELRQ ENSBTAP00000032032/1-1504 FGHSEIVTGM KFSNDCKHLI SVSGDSCIFV WRLSSEMTIS MRQRLAELRQ bmy_09151T0/1-1450 FGHSEIVTGM KFSNDCKHLI SVSGDSCIFV WRLSSEMTIS MRQRLAELRQ BACU008503/1-1512 FGHSEIVTGM KFSNDCKHLI SVSGDSCIFV WRLSSEMTIS MRQRLAELRQ 751 800 ENSTTRP00000002371/1-1509 HQRGGKQQGP SSPQRAAGPN RHEAPSMLSP GLALSSDSDK EGEDEGTEEE ENSP00000393099/1-1514 RQRGGKQQGP SSPQRASGPN RHQAPSMLSP GPALSSDSDK EGEDEGT-EE ENSBTAP00000032032/1-1504 RQRGGKQQGS SSPQRAAGPN RHEAPSMLSP GPALSSDSDK EGEDEGTEEE bmy_09151T0/1-1450 HQRGGKQQGP SSPQRAAGPN RHEAPSMLSP GLALSSDSDK EGEDEGTEEE BACU008503/1-1512 HQRGGKQQGP SSPQRAAGPN RHEAPSMLSP GLALSSDSDK EGEDEGTEEE 801 850 ENSTTRP00000002371/1-1509 ELPALPILAK GTKKEPASVP SAALPRSLSH WEMSRXXXXX XXXXXXXXXX ENSP00000393099/1-1514 ELPALPVLAK STKKALASVP SPALPRSLSH WEMSRAQESV GFLDPAPAAN ENSBTAP00000032032/1-1504 ELPALPVLSR GAKKEPASVP SPALPRSLSH WEMSRAQETE EFLDPAPATN bmy_09151T0/1-1450 ELPALPILAK GTKKEPASVP STALPRSLSH WEMSRAQETE EFLDPAPAAN BACU008503/1-1512 ELPALPVLAK GTKKEPASVP STALPRSLSH WEMSRAQETE EFLDPAPAAN 851 900 ENSTTRP00000002371/1-1509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQD SPAVRRSGPG ENSP00000393099/1-1514 PGPRRRGRWV QPGVELSVRS MLDLRQLETL APSLQDPSQD SLAIIPSGPR ENSBTAP00000032032/1-1504 QGPRRRGRWA QPGVELSVRS MLDLRQLETL APGPRGPHQD SPAMTPSGPG bmy_09151T0/1-1450 QGPRRRGRWA QPGVELSVRS MLDLRQLETL APSPRGPSQD SLAVSPSGPG BACU008503/1-1512 QGPRRRGRWA QPGVELSVRS MLDLRQLETL APSPRGPSQD SLAVSPSGPG 901 950 ENSTTRP00000002371/1-1509 KHGWQAPETS HAGQNEKRPR PQASQPCSCP HIIRLLSQDE GVFAQELEPA ENSP00000393099/1-1514 KHGQEALETS LTSQNEKPPR PQASQPCSYP HIIRLLSQEE GVFAQDLEPA ENSBTAP00000032032/1-1504 KHSQQAPETS SVSKNEKLPR PQASQPCSCP HIIRLLSQEE GLFAQDLETA bmy_09151T0/1-1450 KHGQQAPETS HASQNEKRPR PQASQPCSCP HIIRLLSQDE GVFTQELEPA BACU008503/1-1512 KHGQQAPETS HASQNEKRPR PQASQPCSCP HIIRLLSQDE GVFAQELEPA 951 1000 ENSTTRP00000002371/1-1509 PIEDGIVYPE PSDSPTLDT- -SEFQVQAPA QGTLGRVYAG SRGSEKHSPD ENSP00000393099/1-1514 PIEDGIVYPE PSDNPTMDT- -SEFQVQAPA RGTLGRVYPG SRSSEKHSPD ENSBTAP00000032032/1-1504 PIEDGIVYPE PGDSPTLDT- -SEFQVQAPS RGTLGRVYAD GRGSEKHSPD bmy_09151T0/1-1450 RIEDGIVYPE PSDSPTLDTR QGEFQVQAPA RGTLGRVYAG SRGSEKHSPD BACU008503/1-1512 PIEDGIVYPE PSDSPTLDTR QGEFQVQAPA RGTLGRVYAG SGGSEKHSPD 1001 1050 ENSTTRP00000002371/1-1509 SACSVDFSSS RLSSPEHPNE DSESTEPLSV DGISSDLEEP AEGDEEEEEE ENSP00000393099/1-1514 SACSVDYSSS CLSSPEHPTE DSESTEPLSV DGISSDLEEP AEGDEEEEEE ENSBTAP00000032032/1-1504 SACSVDFSSS RLSSPEHPNE DSESTEPLSV DGISSDLEEP AEGDEEEEED bmy_09151T0/1-1450 SACSVDFSSS RLSSPEHPNE DSESTEPLSV DGISSDLEEP VEGDEEEEEE BACU008503/1-1512 SACSVDFSSS RLSSPEHPNE DSESTEPLSV DGISSDLEEP VEGDEEEEEE 1051 1100 ENSTTRP00000002371/1-1509 EGGTGPYGVQ EGSPHTPDQE QFLKQHFETL ANGAAPGGPV RVPERTESRS ENSP00000393099/1-1514 EGGMGPYGLQ EGSPQTPDQE QFLKQHFETL ASGAAPGAPV QVPERSESRS ENSBTAP00000032032/1-1504 EGGTGPYEVQ EGSPHTPDQE QFLKQHFETL ANGAAPGGPV RVPERTESRS bmy_09151T0/1-1450 EGGTGPYGVQ EGSPHTPDQE QFLKQHFETL ANGAAPGGPV RVPERTESRS BACU008503/1-1512 EGGTGPYGVQ EGSPHTPDQE QFLKQHFETL ANGAAPGGPV RVPERTESRS 1101 1150 ENSTTRP00000002371/1-1509 ISSRFLLQVQ RPRLREPSPS SSSLAMTSRP AQVPQASGEQ LRGSGANPPG ENSP00000393099/1-1514 ISSRFLLQVQ TRPLREPSPS SSSLALMSRP AQVPQASGEQ PRGNGANPPG ENSBTAP00000032032/1-1504 ISSRFLLQVQ SPPLREPSPS SSSLAVTSRL AQGLQASGEQ PRGSGANPPG bmy_09151T0/1-1450 ISSRFLLQVQ SPALREPSPS SSSLAMTSRP AQVPQASGEQ LRGNGANPPG BACU008503/1-1512 ISSRFLLQVQ SPALREPSPS SSSLAMTSRP AQVPQASGEQ LRGNGANPPG 1151 1200 ENSTTRP00000002371/1-1509 APPEAGPSLG NPGPQQAAPV LLPRRRLNRD SSWAPKRVAT ASASGGLQKA ENSP00000393099/1-1514 APPEVEPSSG NPSPQQAASV LLPRCRLNPD SSWAPKRVAT ASPFSGLQKA ENSBTAP00000032032/1-1504 APPEAEPSPG NPGPQQTVPV LLPRRRLSPD SGWSPKRVAA AGPTGGLQKA bmy_09151T0/1-1450 APPEAGPSLG NPGPQQAAPV LLPRRRLNPD SSWAPKRVAT ASASGGLQKA BACU008503/1-1512 APPEAGPSLG NPGPQQAAPV LLPRRRLNPD SSWAPKRVAT ASASGGLQKA 1201 1250 ENSTTRP00000002371/1-1509 QSVQSLVPQD ------EAPP PGPLLLQEME AQERLCSLPQ ADSRLSQPHS ENSP00000393099/1-1514 QSVHSLVPQE RHEASLQAPS PGALLSREIE AQDGLGSLPP ADGRPSRPHS ENSBTAP00000032032/1-1504 QSVQSLVPQD ------EAPP PGLLLSQEME AQGCLCPLPK ADRRLSRPHS bmy_09151T0/1-1450 QSVQSLVPQD ------EAPP PGPLLLQEME AQGRLCSLPQ ADSRLSQPHS BACU008503/1-1512 QSVQSLVPQD ------EAPP PGPLLLQEME AQGRLCSLPQ ADSRLSQPHS 1251 1300 ENSTTRP00000002371/1-1509 YRNPTTSSMA KISRSISVGE NLGLAAEPQA PAPIRVSPLS KLALPSRAHL ENSP00000393099/1-1514 YQNPTTSSMA KISRSISVGE NLGLVAEPQA HAPIRVSPLS KLALPSRAHL ENSBTAP00000032032/1-1504 YQSPTTSSMA KIARSISVGE NLGLAAEHQA PAPVRISPLN KLALPSRAHL bmy_09151T0/1-1450 YQNPTTSSMA KIARSISVGE NLGLAAEPQA PAPIRVSPLS KLALPSRAHL BACU008503/1-1512 YQNPTTSSMA KIARSISVGE NLGLAAEPQA PAPIRVSPLS KLALPSRAHL 1301 1350 ENSTTRP00000002371/1-1509 VLDIPKPLPX XXXXXXXXPA TKGQAPIEAE QPGPPVGLAK AHSTSERRAC ENSP00000393099/1-1514 VLDIPKPLPD RPTLAAFSPV TKGRAPGEAE KPGFPVGLGK AHSTTERWAC ENSBTAP00000032032/1-1504 VLDIPKPLPD RPTLATFSPA TKGRAPGEAE QPGCPVGLGK THSTAERRAC bmy_09151T0/1-1450 VLDIPKPLPD RPTLATFSPA TKGRAPGEAE QPGPSAGLAK AHSTSERRAC BACU008503/1-1512 VLDIPKPLPD RPTLATFSPA TKGRAPGEAE QPGPSAGLAK AHSTSERRAC 1351 1400 ENSTTRP00000002371/1-1509 SGEGATPKPR TEGQAQPGPN SPRAQQLPVS ILLRGPESLQ SPPPEKAPSP ENSP00000393099/1-1514 LGEGTTPKPR TECQAHPGPS SPCAQQLPVS SLFQGPENLQ PPPPEKTPNP ENSBTAP00000032032/1-1504 SGEGATPKPR TECQAQPGPN SPCAQQLPAS SLLRGPANLQ PPPLEKTPSP bmy_09151T0/1-1450 LGEGATPKPR TEGQAQPGPN SPRAQQLPVS SLLRGPENLQ SPAPEKTPGP BACU008503/1-1512 LGEGATPKPR TEGQAQPGPN SPRAQQLPVS SLLRGPENLQ SPAPEKTPSP 1401 1450 ENSTTRP00000002371/1-1509 VECTRPGAAQ SRDSEPAVSL EQCEQLVAEL QGSVRQAVQL YHLVASCKTP ENSP00000393099/1-1514 MECTKPGAAL SQDSEPAVSL EQCEQLVAEL RGSVRQAVRL YHSVAGCKMP ENSBTAP00000032032/1-1504 VECARPGAAL SRDSEPAVSL EQCEQLVAEL QGSVRQAVQL YHLVASCKTP bmy_09151T0/1-1450 VERTRPGAAR SRDSEPAVSL EQCEQLVAEL QGSVRQAVQL YHLVASCKTP BACU008503/1-1512 VERTRPGAAR SRDSEPAVSL EQCEQLVAEL QGSVRQAVQL YHLVASCKTP 1451 1500 ENSTTRP00000002371/1-1509 SAEQSRITQL LRNTFSSVRQ ELEALAGAVL SSPGGSPGTA GAEQTQALLE ENSP00000393099/1-1514 SAEQSRIAQL LRDTFSSVRQ ELEAVAGAVL SSPGSSPGAV GAEQTQALLE ENSBTAP00000032032/1-1504 SVEQSRITQL LRSTFSSVRQ ELEALAGAVL ASPGGSPGAV GAEQTQALLE bmy_09151T0/1-1450 SAEQSRITQL LRNTFSSVRQ ELEALAGAML SSPGGSPGAA GAEQTQALLE BACU008503/1-1512 SAEQSRITQL LRNTFSSVRQ ELEALAGAVL SSPGGSPGAA GAEQTQALLE 1501 1550 ENSTTRP00000002371/1-1509 QYSELLLRAV ERRMERRL ENSP00000393099/1-1514 QYSELLLRAV ERRMERKL ENSBTAP00000032032/1-1504 QYSELLLRAV ERRMERRL bmy_09151T0/1-1450 QYSELLLRAV ERRMERRL BACU008503/1-1512 QYSELLLRAV ERRMERRL