KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:49 2014 Check: 00 .. Name: ENSP00000310966/1-510 Len: 547 Check: 5914 Weight: 1.00 Name: ENSBTAP00000032197/1-532 Len: 547 Check: 1488 Weight: 1.00 Name: bmy_15597T0/1-530 Len: 547 Check: 8847 Weight: 1.00 Name: BACU002111/1-528 Len: 547 Check: 4965 Weight: 1.00 Name: ENSTTRP00000007869/1-519 Len: 547 Check: 8417 Weight: 1.00 // 1 50 ENSP00000310966/1-510 ----MEEPQA GDAARFSCPP NFTAKPPASE SPRFSLEALT GPDTELWLIQ ENSBTAP00000032197/1-532 ----MAGTPS GSAARFSCPP NFTATPPASE HSRFSLEALT GPDTELWLIQ bmy_15597T0/1-530 MGPGMAGTHS GGAARFSCPP NFTATPPASE HTRFSLEALT GPDTELWLIQ BACU002111/1-528 ----MAGTQS GGAARFSCPP NFTATPPASE HTRFSLEALT GPDTELWLIQ ENSTTRP00000007869/1-519 ----MAGTTS GGAARFSCPP NFTATPPASE HTHFSLEALT GPDTELWLIQ 51 100 ENSP00000310966/1-510 APADFAPECF NGRHVPLSGS QIVKGKLAGK RHRYRVLSSC -PQA-GEATL ENSBTAP00000032197/1-532 APVDFAPDCL NGRLVPLSGS QIVKGKLAGK RHRYRVLSSS GPRAGGEATL bmy_15597T0/1-530 APVDFAPDCL NGRLVPLSGS QILKGKLAGK RHRYRVLSSS GPQAGGGATL BACU002111/1-528 APADFAPDCL NGRLVPLSGS QILKGKLAGK RHRYRVLSSS GPQAGGGATL ENSTTRP00000007869/1-519 APVDFAPDCL NGRLVPLSGS RILKGKLAGK RHRYRVLSSS GPQAGGGATL 101 150 ENSP00000310966/1-510 LAPSTEAGGG LTCASAPQGT LRILEGPQQS LSGSPLQPIP ASPPPQIPPG ENSBTAP00000032197/1-532 LAPSAEAGGG LTCALAPQGS LRIFESPQES LTGTLLQSIP ASPPPQIPPG bmy_15597T0/1-530 LAPSAEAGGG LTCAPALQGS LRILEGPQES LTGTLLQPIP ANPPPQIPPG BACU002111/1-528 LAPSAEAGGG LTCAPALQGS LRILEGPQES LTGTLLQPIP ANPPPQIPPG ENSTTRP00000007869/1-519 LAPSAEAGGG LTSAPALQGS LRIFEGPQES LTGTLLQPIP ANPPPQIPPG 151 200 ENSP00000310966/1-510 LRPRFCAFGG NPPVTGPRSA LAPNLLTSGK KKKEMQVTEA PVTQEAVNGH ENSBTAP00000032197/1-532 LRPRFCAFGG SPPVTGPGSV LALKSLASGK RKKKRHLPEA SVPQEAVNEH bmy_15597T0/1-530 LKPRFCAFGG SPPVTGPGSV LALKSLASGK RKKKRHVPEA SVPQEAVNEP BACU002111/1-528 LKPRFCAFGG SPPVTGPGSV LALKSLASGK RKKKRHVPEA SVPQEAVNEP ENSTTRP00000007869/1-519 LKPRFCAFGG SPPVTGPGSV LALKSPASGK RKKKRHVPEP SVPREAVNEP 201 250 ENSP00000310966/1-510 GALEVDMALG SPEMDVRKKK KKKNQQLKEP EAAGPVGTEP TVETLEPLGV ENSBTAP00000032197/1-532 GALEVDTALG SLELDVGKKE KK--HQLKEL EATEPLATEP VAEMLEPPGT bmy_15597T0/1-530 GAPEVDTALG SSEVDVGKKK KK--QQLKDL EVTEPLATEP AAEMLEPLGA BACU002111/1-528 GAPEVGTALG SSEVDVGKKK KK--QQLKDL EVTEPLATEP AAEMLEPLGA ENSTTRP00000007869/1-519 RALEVDTALG SSEVDVGKKK KK--QQLKDL EVTEPLATEP AAEMLEPLGA 251 300 ENSP00000310966/1-510 LFPSTTKKRK KPKGK----- ----ETFEPE DKTV-KQE-Q INTEPLEDTV ENSBTAP00000032197/1-532 LSPSTTRKRK KKPKESVEMV KPETGMPESK EKTVEELEFR VKREPLEETV bmy_15597T0/1-530 LSPATTKKRK KKPKE-VEMV KPEMGVLESE EKTV-ELELM VKSEPLEETV BACU002111/1-528 LSPATTKKRK KKPKE-VEMV KPEMGVLESE EKTV-ELELM VKSEPLEETV ENSTTRP00000007869/1-519 LSPATTKKRK KKPKE-VEMV -------ESE EKTV-ELELM VKSEPLEETV 301 350 ENSP00000310966/1-510 LSPTKKRKRQ KGTEGMEPEE GVTVESQPQV KVEPLEEAIP LPPT-KKRKK ENSBTAP00000032197/1-532 LSPRKKRKKQ KEPGEMEPVE GTTVESQLQV KTEPQEEAIP LPSS-KKKKK bmy_15597T0/1-530 LSPSKKRKKQ KRTDGMEPVE GTIVEPQLQV KMEAQEEAIP LPSS-KKKKK BACU002111/1-528 LSPSKKRKKQ RGTDGMELVE GTIVEPQLQV KMEPQEEAIP LLSSKKKKKK ENSTTRP00000007869/1-519 LSPSKKRKKQ TGTEGMEPVE GMIVEPQLQM KMEPQEEAIP LPSS-KKKKK 351 400 ENSP00000310966/1-510 EKGQMAMMEP GTEAMEPVEP EMKPLESPGG TMAPQQPEGA KPQAQAALAA ENSBTAP00000032197/1-532 EKRYKGMREP GMEVM---EP EVKPLELTGE VMEPDLPPDV QAQSEAALGS bmy_15597T0/1-530 EKGYKVMTEP GTEVI---EP EMKPLELPGE MMEPELPHEV KPQAEAVLAS BACU002111/1-528 EKGYKVMTEP GTEVT---EP EMKPLELPGE MMEPELPHEV EPQAEAVLAS ENSTTRP00000007869/1-519 EKGYKVMREP GTEVI---EP EMKPLELPGE MIEPELPHEV EPQAEAVLAS 401 450 ENSP00000310966/1-510 PKKKTKKEKQ QDATVEPETE VVGPE----- --LPDDLEPQ AAPTST-KKK ENSBTAP00000032197/1-532 PKKRRKKEKQ QNVMMQPGTE VVEPQAEGME PELPGAAEPQ AALAST---K bmy_15597T0/1-530 PKKRRKKEKR QNAMMEPGTE VVEPQEEVME P------EPQ AALAST-KKK BACU002111/1-528 PKKRRKKEKR QNAMMEPGTE VVEPQEEVME P------EPQ AALASTKKKK ENSTTRP00000007869/1-519 PRKRRKKEKR QNAIMEPGTE VVEPQEEVME P------APQ AALAST---K 451 500 ENSP00000310966/1-510 KKKKERGHTV TEP----IQP ----LEPELP GEGQPEARAT PGSTKKRKKQ ENSBTAP00000032197/1-532 KKKKERGHLA TEPGTEMTNP QGEMMEPELP DEGQPEARAD PASTKKRKKQ bmy_15597T0/1-530 KKKKERGHKA TEPGTEMINP QGEMMAPELP DEGQSEAGAD PVSTKKKKKR BACU002111/1-528 KKKKERGHKA TEPGTEMINP QGEMMEPELP DEGQSEAGAD PAPTKKKKKR ENSTTRP00000007869/1-519 KKKKERGHKA TEPGTEMTNP QGEMMEPELP HEGQSEAGAD PASTKKKKKR 501 550 ENSP00000310966/1-510 SQESRMPETV PQEEMPGPPL NSESGEEAPT GR--DKKRKQ Q-QQQPV ENSBTAP00000032197/1-532 GQKSQVPETA PQEEMPEPPL NPESGQVAPK GQ--ERKRKK KPQQDPM bmy_15597T0/1-530 GQESRVPETA SQEEMPELLL NPESGEVAPT GQ--ERKRKK KPQQDPV BACU002111/1-528 GQESRVPETA SQEEMPELLL NPESGEVAPT GQ--ERKRKK QPQQDPV ENSTTRP00000007869/1-519 GRESWVPETA SQEEMPEPLL NPESGEVAPT GQEGERKRKK KPQQDPV