KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:49 2014 Check: 00 .. Name: ENSTTRP00000000560/1-253 Len: 254 Check: 9567 Weight: 1.00 Name: ENSBTAP00000032212/1-254 Len: 254 Check: 8442 Weight: 1.00 Name: ENSP00000373153/1-254 Len: 254 Check: 7722 Weight: 1.00 Name: BACU006080/1-254 Len: 254 Check: 8235 Weight: 1.00 Name: bmy_03216T0/1-202 Len: 254 Check: 3414 Weight: 1.00 // 1 50 ENSTTRP00000000560/1-253 MAAAAATAAT KGNGGGGARA GAGEASGSRK KKGPGPLATA YLVIYNVVMT ENSBTAP00000032212/1-254 MAAAAAIAAS KGNGGGGGRA GAGEASSSRR KKGPGPLATA YLVIYNVVMT ENSP00000373153/1-254 MAAVAATAAA KGNGGGGGRA GAGDASGTRK KKGPGPLATA YLVIYNVVMT BACU006080/1-254 MAAAAATAAT KGNGGGGARA GAGEASGSRK RKGPGPLATA YLVIYNVVMT bmy_03216T0/1-202 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000560/1-253 AGWLVIAVGL VRAYLAKGSY HSLYYSIEKP LKFFQTGALL EFLHYN-QIV ENSBTAP00000032212/1-254 AGWLVIAVGL VRAYLAKGSY HSLYYSIEKP LKFFQTGALL EILHCAIGIV ENSP00000373153/1-254 AGWLVIAVGL VRAYLAKGSY HSLYYSIEKP LKFFQTGALL EILHCAIGIV BACU006080/1-254 AGWLVIAVGL VRAYLAKGSY HSLYYSIEKP LKFFQTGALL EILHCAIGIV bmy_03216T0/1-202 --WLVIAVGL VRAYLAKGSY HSLYYSIEKP LKFFQTGALL EILHCAIGIV 101 150 ENSTTRP00000000560/1-253 PSSVVLTSFK VXXXXXXXXX XXXXXXXVQS EDSVLLFVIA WTITEIIRYS ENSBTAP00000032212/1-254 PSSVVLTSFQ VMSRVFLIWA VTHSVKEVQS EDSVLLFVIA WTITEIIRYS ENSP00000373153/1-254 PSSVVLTSFQ VMSRVFLIWA VTHSVKEVQS EDSVLLFVIA WTITEIIRYS BACU006080/1-254 PSSVVLTSFQ VMSRVFLIWA VTHSVKEVQS EDSVLLFVIA WTITEIIRYS bmy_03216T0/1-202 PSSVVLTSFQ VMSRVFLIWA VTHSVKEVQS EDSVLLFVIA WTITEIIRYS 151 200 ENSTTRP00000000560/1-253 FYTFSLLNHL PYLIKWARYT LFIVLYPMGV SGELLTIYAA LPFVRQSGLY ENSBTAP00000032212/1-254 FYTFSLLNHL PYLIKWARYT LFIVLYPMGV SGELLTIYAA LPFVRQAGLY ENSP00000373153/1-254 FYTFSLLNHL PYLIKWARYT LFIVLYPMGV SGELLTIYAA LPFVRQAGLY BACU006080/1-254 FYTFSLLNHL PYLIKWARYT LFIVLYPMGV SGELLTIYAA LPFVRQSGLY bmy_03216T0/1-202 FYTFSLLNHL PYLIKWARYT LFIVLYPMGV SGELLTIYAA LPFVRQSGLY 201 250 ENSTTRP00000000560/1-253 SISLPNKYNF SFDYYAFLIL IMISYIPIFP QLYFHMIHQR RKVLSHTEEH ENSBTAP00000032212/1-254 SISLPNKYNF SFDYYAFLIL IMISYIPLFP QLYFHMIHQR RKILSHTEEH ENSP00000373153/1-254 SISLPNKYNF SFDYYAFLIL IMISYIPIFP QLYFHMIHQR RKILSHTEEH BACU006080/1-254 SISLPNKYNF SFDYYAFLIL IMISYIPIFP QLYFHMIHQR RKVLSHAEEH bmy_03216T0/1-202 SISLPNKYNF SFDYYAFLIL IMISYIPIFP QLYFHMIHQR RKVLSHAEEH 251 300 ENSTTRP00000000560/1-253 KKFE ENSBTAP00000032212/1-254 KKFE ENSP00000373153/1-254 KKFE BACU006080/1-254 KKFE bmy_03216T0/1-202 KKFE