KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:50 2014 Check: 00 .. Name: ENSTTRP00000002089/1-491 Len: 492 Check: 4477 Weight: 1.00 Name: ENSP00000376035/1-487 Len: 492 Check: 1808 Weight: 1.00 Name: ENSBTAP00000032217/1-489 Len: 492 Check: 9850 Weight: 1.00 Name: bmy_12292T0/1-491 Len: 492 Check: 4624 Weight: 1.00 Name: BACU000606/1-491 Len: 492 Check: 5177 Weight: 1.00 // 1 50 ENSTTRP00000002089/1-491 MPTSPTRLPS PYGSDRLVRL AARLRPALCD TLITVGSQEF PAHSLVLAGV ENSP00000376035/1-487 MSLPPIRLPS PYGSDRLVQL AARLRPALCD TLITVGSQEF PAHSLVLAGV ENSBTAP00000032217/1-489 MPLSPTRLPS PYASDRLVRL AARLRPALCD TLITVGSQEF PAHSLVLAGV bmy_12292T0/1-491 MPMSPTRLPS PYGSDRLVRL AARLRPALCD TLITVGSQEF PAHSLVLAGV BACU000606/1-491 MPMSPTRLPS PYGSDRLVRL AARLRPALCD TLITVGSQEF PAHSLVLAGV 51 100 ENSTTRP00000002089/1-491 SQQLGRRGRW ALVKGISPST FAQLLHFVYG ESLELQPGEL GPLEEAAREL ENSP00000376035/1-487 SQQLGRRGQW ALGEGISPST FAQLLNFVYG ESVELQPGEL RPLQEAARAL ENSBTAP00000032217/1-489 SQQLGRRGRW AVVKGISPST FAQLLHFVYG ESLELHPGEL GPLEEAARTL bmy_12292T0/1-491 SQQLGRRGHW ALVKGISPST FAQLLHFVYG ESLELQPGEL GPLEEAARAL BACU000606/1-491 SQQLGRRGHW ALVKGISPST FAQLLHFVYG ESLELQPGEL GRLEEAARAL 101 150 ENSTTRP00000002089/1-491 GVQSLEEACM RARRDTAREE LGPGLXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376035/1-487 GVQSLEEACW RARGDRAKKP D-PGLKKHQE EPEKPSRNPE RELGDPGEKQ ENSBTAP00000032217/1-489 GVQSLEEACF RARRDMAREE LGPGLKK-QE ELEKPTRDSM RGVGAFGEKQ bmy_12292T0/1-491 GVQSLEEACM RARRDTAREE VGPGLKEQQE EPEKPTRDSM RGVGGFGEKQ BACU000606/1-491 GVQSLEEACM RARRDTAREE VGPGLKEQQE EPEKPTRDSM RGVGGFGEKQ 151 200 ENSTTRP00000002089/1-491 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376035/1-487 KPEQVSRTGG REQEMLHKHS PPRGRPEMAG ATQEAQQEQT RSKEKRLQAP ENSBTAP00000032217/1-489 RPEKFVRAGG KEQETLHRPR PPRESPDTAE AILEGRGEQM RPKEQLHQAL bmy_12292T0/1-491 RPQKFVRAGG KEQETLHRHR PSRESPEMAE ATLEDQGEQM RPEEKLNQSP BACU000606/1-491 RPQKFVRAGG KEQETLHRHR PPRESPEMAE ATLEDQGEQM RPEEKLNQSP 201 250 ENSTTRP00000002089/1-491 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376035/1-487 VGQRGADGKH GVLTWLRENP GGSEESLRKL PGPLPPAGSL QTSVTPRPSW ENSBTAP00000032217/1-489 VGHGRVGGKQ EVVMWLRDSA RGSEESLREF PGPLPPAGSF QTGITPSPWW bmy_12292T0/1-491 VGRGGADGKQ EVIMWVRDSP GGSEESLREF PGPLPPPGSL QTGITPRPWW BACU000606/1-491 VGRRGANGKQ EVIMWVRESP GGSEESLREF PGPLPPPGSL QTGITPRPWW 251 300 ENSTTRP00000002089/1-491 XXXXXXXXXX XXXXXXXXXX XXXXTPFSHS TPMTAAQQEV WPRDQRIPLS ENSP00000376035/1-487 AEAPWLVGGQ PALWSILLMP PRYGIPFYHS TPTTGAWQEV W-REQRIPLS ENSBTAP00000032217/1-489 AEAPWLGEGQ SALWSILLLP PRYGTPFSHS IPMTGAWQEV WPPDQRIPLS bmy_12292T0/1-491 AEAPWLGEGQ PALWSILLLP PRYGTPFSHS TPMTAARQEV WPQDQRIPLS BACU000606/1-491 AEAPWLGEGQ PALWSILLLP PRYGTPFSHS TPMTAARREV WPQDQRIPLS 301 350 ENSTTRP00000002089/1-491 LSLHKGLWSQ NQLASCSPTP GSLPQGPTQL SPGEMEESDQ RHTGELATCV ENSP00000376035/1-487 LNAPKGLWSQ NQLASSSPTP GSLPQGPAQL SPGEMEESDQ GHTGALATCA ENSBTAP00000032217/1-489 LNLHKGLWSQ NQLASSSPTP GSLPQVPTQL SPGETEESDQ RRTGELATCV bmy_12292T0/1-491 LNLHKGLWNQ NQLASCSPTP GSLPQGPTQL SPGEMEESDQ RHTGELATCV BACU000606/1-491 LNLHKGLWNQ NQLASCSPTP GSLPQGPTQL SPGEMEESDQ RHTGELATCV 351 400 ENSTTRP00000002089/1-491 GHVGTASHPS HQHPPPPPPA RSRPYSCSVC GKRFSLKHQM ETHYRV-TGE ENSP00000376035/1-487 GHEDKAGCPP RPHPPPAPPA RSRPYACSVC GKRFSLKHQM ETHYRVHTGE ENSBTAP00000032217/1-489 GQVGTASHPS LPHPPPPTPA RSRPYSCSVC GKRFSLKHQM ETHYRVHTGE bmy_12292T0/1-491 GHVGTASHAS QQHPPPPPPA RSRPYSCSVC GKRFSLKHQM ETHYRVHTGE BACU000606/1-491 GHVGTASHAS QQHPPPPPPA RSRPYSCSVC GKKFSLKHQM ETHYRVHTGE 401 450 ENSTTRP00000002089/1-491 KPFSCSLCPQ RSRDFSAMTK HLRTHGAAPY RCPLCQAGCP SLASMQTHMR ENSP00000376035/1-487 KPFSCSLCPQ RSRDFSAMTK HLRTHGAAPY RCSLCGAGCP SLASMQAHMR ENSBTAP00000032217/1-489 KPFSCSLCPQ RSRDFSAMTK HLRTHGAAPY RCPLCQAGCP SLASMQAHMR bmy_12292T0/1-491 KPFSCSLCPQ RSRDFSAMTK HLRTHGAAPY RCPLCQAGCP SLASMQTHMR BACU000606/1-491 KPFSCSLCPQ RSRDFSAMTK HLRTHGAAPY RCPLCQAGCP SLASMQTHMR 451 500 ENSTTRP00000002089/1-491 GHSPSQLPPG WTIRSTFLYS SSSSSRPSRA STSPCRPPSS TT ENSP00000376035/1-487 GHSPSQLPPG WTIRSTFLY- --SSSRPSRP STSPCCPSSS TT ENSBTAP00000032217/1-489 GHSPSQLPPG WTIRSTFLY- -SSSSRPSRA STSPSRPSSS TT bmy_12292T0/1-491 GHSPSQLPPG WTIRSTFLY- SSSSSRPSRA STSPCRPPSS TT BACU000606/1-491 GHSPSQLPPG WTIRSTFLY- SSSSSRPSRA STSPCRPPSS TT