KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:50 2014 Check: 00 .. Name: BACU018165/1-343 Len: 458 Check: 8474 Weight: 1.00 Name: bmy_19147T0/1-448 Len: 458 Check: 290 Weight: 1.00 Name: ENSP00000299952/1-410 Len: 458 Check: 7127 Weight: 1.00 Name: ENSTTRP00000000143/1-379 Len: 458 Check: 3692 Weight: 1.00 Name: ENSBTAP00000032235/1-383 Len: 458 Check: 2569 Weight: 1.00 // 1 50 BACU018165/1-343 MEH-TSGNRE SRARPRERDP DRHPRPDRDR HPERQRDRAG --DRRRERNG bmy_19147T0/1-448 MATHVFDYSE PTS---GRYP LSTPRPGLEE VEYYQSEAEG LLECHKCRYL ENSP00000299952/1-410 MED-PSGARE PRARPRERDP GRRPHPDQGR THDRPRDRPG --DPRRKRSS ENSTTRP00000000143/1-379 MEQHTSGNRE SRARPRERDP DRHPRPDRER HPERQRDRAG --DRRRERNG ENSBTAP00000032235/1-383 MEQ-TSGTRE SRARPRERDP DRHPRPERDR HPERQRDRAG --DRHRERNG 51 100 BACU018165/1-343 GG--RRDGDR F--------- ---------- -----PAVQD GP---SPKSS bmy_19147T0/1-448 CT--GRACCQ MLEVLLNLLI LACSSVSYSS TGGYTGITSL GGIYYYQYGG ENSP00000299952/1-410 DGNRRRDGDR DPERDQERDG NRDRNRDRER ERERERDPDR GPRRDTHRDA ENSTTRP00000000143/1-379 GG--RKDEDR G--------- ---------- -------RDR EPRQDRHRG- ENSBTAP00000032235/1-383 GG--LRDGDR D--------- ---------- -----RERNR QPRQDRPRAG 101 150 BACU018165/1-343 PLQG------ ----DIRFRP PGLDSRKWNI TSQR------ ---------- bmy_19147T0/1-448 AYSGFDGADG EKAQQLDVQF YQLKLPMVTV AMACSGALMA FCCLLITMGV ENSP00000299952/1-410 GPRAGEHGVW EKPRQSRTRD -GARGLTWDA AAPP------ ---------- ENSTTRP00000000143/1-379 -HRG--ERVG EHSRQSRTRX XXXXXXXXXX XXXX------ ---------- ENSBTAP00000032235/1-383 DHRGGEQRVW ENSRQSRTRD -GPRRPTWDA APPP------ ---------- 151 200 BACU018165/1-343 LKGSWNATSA -------DTC APGETFGAQI MMEKIVKG-- --ELGQCNKE bmy_19147T0/1-448 LRVPWHCPLW LVIEGLLDVL IAGAYIPALY FYFHNLSAAY --ASPVCKER ENSP00000299952/1-410 GPAPWEAPEP -------PQP QRKGDPGRRR PESEPPSERY LPSTPRPGRE ENSTTRP00000000143/1-379 XXXXXXXXXX --------XX XXXXXXXXXX XXXEPISGRY PLSTPRPGVQ ENSBTAP00000032235/1-383 WPATLETPEP --------PP LRKEGLGRRG PESEPTSGRY ALSNPRPGLQ 201 250 BACU018165/1-343 IVKKKKKR-- ---------- ---------- ---------- --KACCQMLE bmy_19147T0/1-448 EALYQRKGYS GFSCSFHGGD IGAGIFAVLG IGVFALGAVL AIRGYRKIVE ENSP00000299952/1-410 EVEYYQSEAE GLLECHKCKY LCTG------ ---------- --RGVVQIVE ENSTTRP00000000143/1-379 EVEYYQSEAE GLLECHKCRY LCTA------ ---------- --RGVIQIVE ENSBTAP00000032235/1-383 EVVYYQSEAE GLLECHKCRY LCTG------ ---------- --RGVIQIVE 251 300 BACU018165/1-343 VLLNLLILAC SSVSYSSTGG YTGITSLGGI YYYQYGGAYS GFDGADGEKA bmy_19147T0/1-448 VILNGMVLMC IVASYFVLAG FSASFASGGG FGNNY---YS PFEGTELEQV ENSP00000299952/1-410 VVLNGMVLIC IVASYFVLAG FSASFSSGGG FGNNY---YS PFEGTELEQV ENSTTRP00000000143/1-379 VILNGMVLMC IVASYFVLAG FSASFASGGG FGNGY---YS PFEGTELEQV ENSBTAP00000032235/1-383 VILNGMVLMC IVASYFVLAG FSASFASGGG FGNNY---YS PFEGTELEQV 301 350 BACU018165/1-343 QQLDVQFYQL KLPMVTVAMA CSGALMAFCC LLIAMGVLRV PWHCPLWLVI bmy_19147T0/1-448 RQLDQQYTIL RAPLIYSGVA VSLGLGVLTL GVLLQGAKSL NRLPGKWLLL ENSP00000299952/1-410 RQLDQQYTIL RSPLIYGGVA VSLGLGVLTM GVLLQGAKSR TMLSGKWLLT ENSTTRP00000000143/1-379 RQLDQQYTIL RAPLIYSGVA VSLGLGVLTL GVLLQGAKSL NKLPGKWLLF ENSBTAP00000032235/1-383 RQLDQQYTIL RAPLIYGGVA VSLGLGVLTL GVLLQGAKSL HKLPGKWLLL 351 400 BACU018165/1-343 EGLLDVLIAG AYIPALYFYF HNLSAAYASP VCKEREALYQ RKGYSGFSCS bmy_19147T0/1-448 EAAFSLLAAL GYCVGIGIYL HAALRINATD TCRTRERVYA RRGLTWMNCQ ENSP00000299952/1-410 EAAFSLLAAV GYCTGIGVYL HVALQINSTD TCKTRERLYA RKGLTWMDCQ ENSTTRP00000000143/1-379 EAAFSLLAAL GYCVGIGLYL HEALRINATD TCRTRERVYA RRGLTWMNCQ ENSBTAP00000032235/1-383 EAAFSLLAAV GYCVGISIYL HAALQINATD TCRTRERVYA RKGLTWMNCQ 401 450 BACU018165/1-343 FHGGDIGAGI FAALGIGVFA VGAVLAIRGY RKVRKLKEKP AEILEF---- bmy_19147T0/1-448 LAGTDGAAAT FACLLVVMYG ASVVLALRSY REQKRYKDSQ EQHSNYNDAP ENSP00000299952/1-410 LAGTDGAAAT FACLLVIMYG ASVVLALRSY REQKRYKGSR EQPGSYSDAP ENSTTRP00000000143/1-379 LAGTDGAAAT FACLLVVMYG ASVVLALRSY REQKHYKDSQ EQHSNYNDAP ENSBTAP00000032235/1-383 LAGTDGAAAT FACLLVVMYG ASVVLALRSY REQKQYKDSQ EQQRNYNDAP 451 500 BACU018165/1-343 -------- bmy_19147T0/1-448 EYLWSGIL ENSP00000299952/1-410 EYLWSGTL ENSTTRP00000000143/1-379 EYLWSGIL ENSBTAP00000032235/1-383 EYVWSGVL