KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:51 2014 Check: 00 .. Name: ENSP00000373176/1-284 Len: 292 Check: 8021 Weight: 1.00 Name: ENSTTRP00000003319/1-283 Len: 292 Check: 7875 Weight: 1.00 Name: ENSBTAP00000032259/1-288 Len: 292 Check: 111 Weight: 1.00 Name: bmy_09360T0/1-258 Len: 292 Check: 586 Weight: 1.00 Name: BACU009333/1-258 Len: 292 Check: 2209 Weight: 1.00 // 1 50 ENSP00000373176/1-284 MAAPGLRLGA GRLFEMPAVL ERLSRYNSTS QAFAEVLRLP KQQLRKLLYP ENSTTRP00000003319/1-283 MAARRLWFDV GWLFAMGAEL GSGRRAYCTS QAFAEVLRLP SKQLTKLVFP ENSBTAP00000032259/1-288 MAAHRLRQSV GRLFAMGPEL GSGRRAFSAF QAFTEVLRLP SKQLTKLVFP bmy_09360T0/1-258 MAARRLRLDV GRLFAVGAEL GSGRRAYCTS QAFAEVLRLP SKQLTKLVFP BACU009333/1-258 MAARRLRLDV ARLFAVGAEL GSGRRAYCTS QAFAEVLRLP SKQLTKLVFP 51 100 ENSP00000373176/1-284 LQEVERFLAP YGRQDLHLRI FDPSPEDIAR ADNIFTATER NRIDYVSSAV ENSTTRP00000003319/1-283 LQELERHFVP GSRPDLHLKI FNPSLDDIAR AESVFTASSR NRIEYLSSAV ENSBTAP00000032259/1-288 LEELHEHFVP GSRPDLHLNI FHPSLEDIAR AESFFTASAR NRIEYLTSAV bmy_09360T0/1-258 LQELERHFVP GSRPDLHLKI FDPSLDDIAR AESVFTASSR NRIEYLSSAV BACU009333/1-258 LQELERHFVP GSRPDLHLKI FDPSLDDIAR AESVFTASSR NRIEYLSSAV 101 150 ENSP00000373176/1-284 RIDHAPDLPR PEV-CFIGRS NVGKSSLIKA LFSLAPEVEV RVSKKPGHTK ENSTTRP00000003319/1-283 RLDHAPDLRR PEVRGVFYRQ NVGKSSLIK- YFHLPQRLKL E-SPKNRXXX ENSBTAP00000032259/1-288 RLDHAPDLHR PEV-CFIGRS NVGKSSLIKA LFSLAPEVEV RVSKKPGHTK bmy_09360T0/1-258 RLDHAPDLRR PEV-CFIGRS NVGKSSLIKA LFSLAPEVEV RVSKKPGHTK BACU009333/1-258 RLDHAPDLRR PE-------- ---------- ---------- ------GHTK 151 200 ENSP00000373176/1-284 KMNFFKVGKH FTVVDMPGYG FRAPEDFVDM VETYLKERRN LKRTFLLVDS ENSTTRP00000003319/1-283 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LMRTFLLVDS ENSBTAP00000032259/1-288 KLNFYKVGKY FTLVDMPGYG YRAPEDFVDM VETYLKERKN LMRTFLLVDS bmy_09360T0/1-258 KMNFFKVGKY FTLVDMPGYG YRAPEDFVDM VETYLKERKN LMRTFLLVDS BACU009333/1-258 KMNFFKVGKY FTLVDMPGYG YRAPEDFVDM VETYLKERKN LMRTFLLVDS 201 250 ENSP00000373176/1-284 VVGIQKTDNI AIEMCEEFAL PYVIVLTKID KSSKGHLLKQ VLQIQKFVNM ENSTTRP00000003319/1-283 VVGIQKTDNI AIEMCEEFAL PYVMVLTKID KSSKGHLLKQ VLQIQKFVDT ENSBTAP00000032259/1-288 VVGIQKADNI AIEMCEEFAL PYVMVLTKID KPSKGHLLKQ VLQIQKFVDT bmy_09360T0/1-258 VVGIQKTDNI AIEMCEEFAL PYVIL----- --AESSL--- ---------- BACU009333/1-258 VVGIQKTDNI AIEMCEEFSL PYVMVLTKID KSSKGHLLKQ VLQIQKFVDT 251 300 ENSP00000373176/1-284 KTQGCFPQLF PVSAVTFSGI HLLRCFIASV TGSLD----- -- ENSTTRP00000003319/1-283 KTQGCFPQLF PVSAVTYSGI HLLRCFIANI TGNLD----- -- ENSBTAP00000032259/1-288 KTQGCFPQLF PVSAMTYSGI HLLRCFIADI TGNLKTTGF- -- bmy_09360T0/1-258 ---------- ---AVTYSGI HLLKCFIANI TGNLKTNGFQ FS BACU009333/1-258 KTQGCFPQLF PVSAVTYSGI HLLKCFIANI TGNLKTNGFQ FS