KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:52 2014 Check: 00 .. Name: ENSP00000317842/1-623 Len: 835 Check: 4036 Weight: 1.00 Name: ENSTTRP00000009663/1-608 Len: 835 Check: 8267 Weight: 1.00 Name: ENSBTAP00000032276/1-553 Len: 835 Check: 1777 Weight: 1.00 Name: bmy_05288T0/1-546 Len: 835 Check: 6078 Weight: 1.00 Name: BACU018091/1-806 Len: 835 Check: 1470 Weight: 1.00 // 1 50 ENSP00000317842/1-623 ---------- ---------- ---------- ---------- ------MTAQ ENSTTRP00000009663/1-608 ---------- ---------- ---------- ---------- ------LPVL ENSBTAP00000032276/1-553 ---------- ---------- ---------- ---------- ---------- bmy_05288T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU018091/1-806 MKADPGNRSP KARSFWNEVP SHFPAFTRVV PFTLNEDCFH LSVYGNPDRA 51 100 ENSP00000317842/1-623 SRSPTTPTFP GPSQRTPLTP ---------- ----CPVQTP RLGKAL---- ENSTTRP00000009663/1-608 SCFPAKPVFP P-------TP ---------- ----FPVQSP GLGETL---- ENSBTAP00000032276/1-553 ---------- ---------- ---------- ---------- ---------- bmy_05288T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU018091/1-806 PPQGSSPGFP NHSLLLPLSP PRNTLVGPVT IRTLNAVQSP GLGEALNRPR 101 150 ENSP00000317842/1-623 IHCWTDPGQP LGEQQRVRRQ RTETSEPTMR LHRLRARLSA VACGLLLLLV ENSTTRP00000009663/1-608 IDGWMVPAQP PGEKQHVRRK K--TCEPTMQ LDQLRKRLRA VAFGVLLLLV ENSBTAP00000032276/1-553 ---------- ---------- --------MK PDGPRLRLRA VAFGFLLLLV bmy_05288T0/1-546 ---------- ---MSAGSAK K--TCEPKMQ LDRLREWLRA VAFGVLLLLV BACU018091/1-806 LDASLRSLLV KSSVSAGSAR K--TCEPKMQ LDRLRERLRA VAFGVLLLLV 151 200 ENSP00000317842/1-623 RGQGQDSASP IRTTHTGQVL GSLVHVKGAN AGVQTFLGIP FAKPPLGPLR ENSTTRP00000009663/1-608 PGQGQDSASP VRTTHTGQVR GSLVHVKNTD VGIHTFLGIP FAKPPLGLLR ENSBTAP00000032276/1-553 PGQGQDSTRP VRTTHTGKVQ GSLVYVNNAD VGVHTFLGIP FAKPPVGPLR bmy_05288T0/1-546 PGQGQDSASP VRTTYTGQVW GSLVHVKNSD VGIHTFLGIP FAKPPLGLLR BACU018091/1-806 PGQGQDSASP VRTTHTGQVR GSLVHVKNTD VGIHTFLGIP FAKPPLGLLR 201 250 ENSP00000317842/1-623 FAPPEPPESW SGVRDGTTHP AMCLQDLTAV ESEFLSQFNM TFPSDSMSED ENSTTRP00000009663/1-608 FAPPEPPESW SGIKDGTSHP AKCLQDFASV KRMTLKLLNV TLPSTSMSED ENSBTAP00000032276/1-553 FAPPEPPESW SGVKDGTSQP AKCPQDADGM KSM--ELWNV TLPSTSMSED bmy_05288T0/1-546 ---------- ---------- --CLQDFASM KEMTLKLLNV TLPSTSMSED BACU018091/1-806 FAPPEPPESW SGIKDGTSHP AKCLQDFASM KEMTLKLLNV TLPSTSMSED 251 300 ENSP00000317842/1-623 CLYLSIYTPA HSHEGSNLPV MVWIHGGALV FGMASLYDGS MLAALENVVV ENSTTRP00000009663/1-608 CLYLNIYTPA HSHEGSKLPV MVCIHGG-FV MGMAS-YDGS AL-AFEDVVI ENSBTAP00000032276/1-553 CLYLNIHTPA YSHEGSNLPV MVWIHGGGLV LGMASMYDGS ALAAFGDVVV bmy_05288T0/1-546 CLYLNIYTPA HSHEGSNLPV MVWIHGGGFV VGMASMYDGS ALAAFEDVVV BACU018091/1-806 CLYLNIYTPA HSHEGSKLPV MVWIHGGAFV VGMASMYDGS ALAAFEDVVV 301 350 ENSP00000317842/1-623 VIIQYRLGVL GFFSTGDKHA TGNWGYLDQV AALRWVQQNI AHFGGNPDRV ENSTTRP00000009663/1-608 V-IQY-LG-L GFFXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000032276/1-553 VVIQYRLGLL GFFSTGDKHA TGNWGYLDQV AALRWVQQNI AYFGGDPGRV bmy_05288T0/1-546 VVIQYRLGLL GFFSTGDKHA TGNWGYLDQV AALRWVQQNI VYFGGDPDHV BACU018091/1-806 VVIQYRLGLL GFFSTGDKHA TGNWGYLDQV AALHWVQQNI VYFGGDPDHV 351 400 ENSP00000317842/1-623 TIFGESAGGT SVSSLVVSPI SQGLFHGAIM ESGVALLPGL IASSADVIST ENSTTRP00000009663/1-608 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000032276/1-553 TIFGESAGGI SVSLHVISPM SQGLFHGAIM ESGVALLPGL TINSSDKVAK bmy_05288T0/1-546 TIFGESAGGV SVSLHVVSPM SEGLFHCAIM ESGVALLPSF TANSSD---- BACU018091/1-806 TIFGESAGGV SVSLHVVSPM SEGLFHCAIM ESGVALLPSF TANSSDVVST 401 450 ENSP00000317842/1-623 VVANLSACDQ VDSEALVGCL RGKSKEEILA INKPFKMIPG VVDGVFLPRH ENSTTRP00000009663/1-608 VVANLSACGQ VDSEALVDCL RHKSEEEILA ISKPFSIIPG LVDGIFLPKH ENSBTAP00000032276/1-553 VVANLSACGQ VDSEALVDCL RHKNEEEVLA INKLVKIIPG VVDGIFLPKH bmy_05288T0/1-546 VVANLSACGQ VDSEALVDCL RRKSEEEILA ISKPFSIIPD LVDGIFLPKH BACU018091/1-806 VVANLSACGQ VDSEALVDCL RHKSEEEILA INKPLSIIPG LVDGIFLPKH 451 500 ENSP00000317842/1-623 PQELLASADF QPVPSIVGVN NNEFGWLIPK VMRIYDTQKE MDREASQAAL ENSTTRP00000009663/1-608 PQELLASADL HPVPSIIGVN SDEYSWILPS FMNNSDAQKE MDRETIKDDL ENSBTAP00000032276/1-553 PLELLASDDF QPVPSIIGVN NDEYGWIIPL SVNNSDTRRE ISRESVRNAL bmy_05288T0/1-546 PQELLASADL HPVPSIIGVN NDEYSWIIPS VMNNSDTQKE MDRETIKDAL BACU018091/1-806 PQELLASADL HPVPSIIGVN NDEFSWIMPS ---------- ---------- 501 550 ENSP00000317842/1-623 QKMLTLLMLP PTFGDLLREE YIGDNGDPQT LQAQFQEMMA DSMFVIPALQ ENSTTRP00000009663/1-608 QKISEMMMMP PEFGDLLMEE YIGDSEDPQT LRIQFHEILG DCIFVIPALQ ENSBTAP00000032276/1-553 QELSTMTTMP PEFGELLMEE YIEDSEDHQN LQNQLHEIMG DYLFVIPALQ bmy_05288T0/1-546 QKISTMMMMP PEFGDLLMEE YIGDSEDPQT LXIQFHEIMG DCIFVIPALQ BACU018091/1-806 -------MMP PEFGDLLMEE YIGDSEDPQT LRIQFHEIMG DCIFVIPALQ 551 600 ENSP00000317842/1-623 VAHFQCSRAP VYFYEFQHQP SWLKNIRPPH MKADHGDELP FVFRSFFGGN ENSTTRP00000009663/1-608 VAKLQCSSAP VYFYEFQHQP SFFRDFRPSY VRADHGDEVH FIFRSLFGSS ENSBTAP00000032276/1-553 VAMFHRSHAP VYFYEFQHQS SFFKDVRPSS VRADHGDEVL FLFRNEQ--- bmy_05288T0/1-546 VAKLQCSYAP VYFYEFQHQP SFFNDVRPSY VRADHGDEVH FIFRSPFGSS BACU018091/1-806 VAKLQCSYAP VYFYEFQHQP SFFKDVRPSY VRADHGDEVH FIFRSPFGSS 601 650 ENSP00000317842/1-623 Y--------- ---------- ---------- ---------- ---------- ENSTTRP00000009663/1-608 H--------- ---------- ---------- ---------- ---------- ENSBTAP00000032276/1-553 ---------- ---------- ---------- ---------- ---------- bmy_05288T0/1-546 H--------- ---------- ---------- ---------- ---------- BACU018091/1-806 HNSGASIFFY EFQHRPSFFA KIKPAWVRAD HGTEKTFIFG GPFLMDESSM 651 700 ENSP00000317842/1-623 IKFTEEEEQL SRKMMKYWAN F--------- --------AR NGNPNGE--- ENSTTRP00000009663/1-608 IQLTEEEELL SRKMMKYWAN F--------- --------AR NGNPNGE--- ENSBTAP00000032276/1-553 IQFTEEEELL SRKMIKYWAN F--------- --------AR NQNPNGE--- bmy_05288T0/1-546 IQLTEEEELL SRKIMKYWAN F--------- --------AR NGNPNGE--- BACU018091/1-806 PEATEEEQQL SLTVMTQWTH FSWTGISQDL ESEDAWCLAH QGASSGYQIW 701 750 ENSP00000317842/1-623 ---------- --------GL PH-------- ---------- WPLFDQEEQY ENSTTRP00000009663/1-608 ---------- --------GL PH-------- ---------- WPVFNQEEQY ENSBTAP00000032276/1-553 ---------- --------GL PH-------- ---------- WPMFDQEDQY bmy_05288T0/1-546 ---------- --------GL PH-------- ---------- WPVFNQEEQY BACU018091/1-806 DPPRKQIHVG KTPINAFLGV PFYRPPVGAC RFTAPEPPEP WEGIRDATTY 751 800 ENSP00000317842/1-623 LQLNLQPAVG RA----LKAH R----LQFWK KALPQKIQEL EEPEER---- ENSTTRP00000009663/1-608 MQLNTQPAVG RA----LKAH R----LQFWT KILPQKIREL MEAKEK---- ENSBTAP00000032276/1-553 MQLNTQPAVG RA----LKAH R----LQFWM KTLPQKTQEL METKEK---- bmy_05288T0/1-546 MQLNTQPAVG RA----LKAH R----LQFWT KTLPQKIREL MEAKEK---- BACU018091/1-806 ALVCLQESWG QITSMYFNTH KNYKWLHFSE DCLHLNVCAP VGALGDPLLP 801 850 ENSP00000317842/1-623 ---------- HTEL------ ---------- ----- ENSTTRP00000009663/1-608 ---------- HTEL------ ---------- ----- ENSBTAP00000032276/1-553 ---------- HTEL------ ---------- ----- bmy_05288T0/1-546 ---------- HTEL------ ---------- ----- BACU018091/1-806 MTSPLAWGLF HQAISQSGTA VPLHHFITWL RSSWA