KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:55 2014 Check: 00 .. Name: ENSTTRP00000012855/1-721 Len: 850 Check: 5654 Weight: 1.00 Name: ENSP00000245157/1-721 Len: 850 Check: 7744 Weight: 1.00 Name: ENSBTAP00000032322/1-721 Len: 850 Check: 5068 Weight: 1.00 Name: bmy_15085T0/1-806 Len: 850 Check: 3786 Weight: 1.00 Name: BACU001853/1-721 Len: 850 Check: 3935 Weight: 1.00 // 1 50 ENSTTRP00000012855/1-721 MLLPVFTLKL RHKISPRMVA VGRYDGTHPC LAAATQAGKV FIHNPHTRSQ ENSP00000245157/1-721 MLLPVFTLKL RHKISPRMVA IGRYDGTHPC LAAATQTGKV FIHNPHTRNQ ENSBTAP00000032322/1-721 MLQPVFTLKL RHKISPRMVA VGRYDGTHPC LAAATQAGKV FIHNPHSRSQ bmy_15085T0/1-806 MLLPVFTLKL RHKISPRMVA VGRYDGTHPC LAAATQAGKV FIHNPHARSQ BACU001853/1-721 MLLPVFTLKL RHKIIPRMVA VGRYDGTHPC LAAATQAGKV FIHNPHARSQ 51 100 ENSTTRP00000012855/1-721 HFSASRVFQS PLESDVSLLN INQAVSCLTA GVLNPELGYD ALLVGTQTNL ENSP00000245157/1-721 HVSASRVFQS PLESDVSLLS INQAVSCLTA GVLNPELGYD ALLVGTQTNL ENSBTAP00000032322/1-721 HLGAPRVLQS PLESDVSLLN INQTVSCLTA GVLNPELGYD ALLVGTQTNL bmy_15085T0/1-806 HFSASRVLQS PLESDISLLN INQAVSCLAA GVLNPELGYD ALLVGTQTNL BACU001853/1-721 HFSASRVLQS PLESDVSLLN INQAVSCLAA GVLNPELGYD ALLVGTQTNL 101 150 ENSTTRP00000012855/1-721 LAYDVYNNSD LFYREVADGA NAIVLGTLGD ISSPLAIIGG NCALQGFDHE ENSP00000245157/1-721 LAYDVYNNSD LFYREVADGA NAIVLGTLGD ISSPLAIIGG NCALQGFNHE ENSBTAP00000032322/1-721 LAYDVYNNSD LFYREVADGA SAIVLGTLGD ITSPLAIIGG NCALQGFNHE bmy_15085T0/1-806 LAYD------ -----VADGA NAIVLGTLGD ISSPLAIIGG NCALQGFDHE BACU001853/1-721 LAYDVYNNSD LFYREVADGA NAIVLGTLGD ISSPLAIIGG NCALQGFDHE 151 200 ENSTTRP00000012855/1-721 GNDLFWTVTG DNVHSLDLCD FDGDGXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000245157/1-721 GSDLFWTVTG DNVNSLALCD FDGDGKKELL VGSEDFDIRV FKEDEIVAEM ENSBTAP00000032322/1-721 GNDLFWTVTG DNVHSLALCD FDGDGKKELL VGSEDFDIRV FKEDEIVAEM bmy_15085T0/1-806 GNDLFWTVTG DNVHSLALCD FDGDGKKELL VGSEDFDIRV FKEDEIVAEM BACU001853/1-721 GNDLFWTVTG DNVHSLALCD FDGDGKKELL VGSEDFDIRV FKEDEIVAEM 201 250 ENSTTRP00000012855/1-721 XXXXIITSLC PMYGSRFGYA LSNGTVGVYD KXXXXXXXXX XXXXXXXXXX ENSP00000245157/1-721 TETEIVTSLC PMYGSRFGYA LSNGTVGVYD KTSRYWRIKS KNHAMSIHAF ENSBTAP00000032322/1-721 SETEIITSLC PMYGSRFGYA LSNGTVGVYD KTARYWRIKS KNQAMSIHAF bmy_15085T0/1-806 TETEIITSLC PMYGSRFGYA LSNGTVGVYD KTARYWRIKS KNHAMSIHAF BACU001853/1-721 TETEIITSLC PMYGSRFGYA LSNGTVGVYD KTARYWRIKS KNHAMSIHAF 251 300 ENSTTRP00000012855/1-721 XXNSDGVCEL ITGWSNGKVD ARSDRTGEVI FKDNFSSAVA GVVEGDYRMD ENSP00000245157/1-721 DLNSDGVNEL ITGWSNGKVD ARSDRTGEVI FKDNFSSAIA GVVEGDYRMD ENSBTAP00000032322/1-721 DLNSDGVCEL ITGWSNGKVD ARSDRTGEVI FKDNFSSAIA GVVEGDYRME bmy_15085T0/1-806 DLNSDGVCEL ITGWSNGKVD ARSDRTGEVI FKDNFSSAVA GVVEGDYRMD BACU001853/1-721 DLNSDGVCEL ITGWSNGKVD ARSDRTGEVI FKDNFSSAVA GVVEGDYRMD 301 350 ENSTTRP00000012855/1-721 GHIQLICCSV DGEIRGYLPG TAEVRGNLMD TSVEQDLIRE LSQKKQNLLL ENSP00000245157/1-721 GHIQLICCSV DGEIRGYLPG TAEMRGNLMD TSAEQDLIRE LSQKKQNLLL ENSBTAP00000032322/1-721 GCQQLICCSV DGEIRGYLPG TAEMRGNLMD ISVEQDLIRE LSQKKQNLLL bmy_15085T0/1-806 GHIQLICCSV DGEIRGYLPG TAEMRGNLMD TSVEQDLIRE LSQKKQNLLL BACU001853/1-721 GHIQLICCSV DGEIRGYLPG TAEMRGNLMD TSVEQDLIRE LSQKKQNLLL 351 400 ENSTTRP00000012855/1-721 ELRNYEDNAK AELSSPLNEA DGHRGIIPAN TKLHTALSIN LGSEAQAAHA ENSP00000245157/1-721 ELRNYEENAK AELASPLNEA DGHRGIIPAN TRLHTTLSVS LGNETQTAHT ENSBTAP00000032322/1-721 ELRNYEENAK AELSSPLNEA DGHRGVIPAN TKLHTALSVS LGSEAQAAHA bmy_15085T0/1-806 ELRNYEDNAK AELSSPLNEA DGHRGIIPAN TKLHTALSVN LGSEAQAAHA BACU001853/1-721 ELRNYEDNAK AELSSPLNEA DGHRGVIPAN TKLHTALSVN LGSEAQAAHA 401 450 ENSTTRP00000012855/1-721 ELCISTSNDT IIRAVLIFAE GIFLGESHVV HPSIHNLSSS IRIPITPPKD ENSP00000245157/1-721 ELRISTSNDT IIRAVLIFAE GIFTGESHVV HPSIHNLSSS ICIPIVPPKD ENSBTAP00000032322/1-721 ELCISTSNDT IIRAVLIFAE GVFAGESHVV HPSVHHLSSS VRIPITPPKD bmy_15085T0/1-806 ELCISTSNDT IIRAVLIFAE GIFLGESHVV HPSIHNLSSS IRIPITPPKD BACU001853/1-721 ELCISTSNDT IIRAVLIFAE GIFLGESHVV HPSIHNLSSS VRIPITPPKD 451 500 ENSTTRP00000012855/1-721 VPVDLHLKTF VGYRSSTQFH VFELTRQLPR FSMYALTSPD SASEPLSYVN ENSP00000245157/1-721 VPVDLHLKAF VGYRSSTQFH VFESTRQLPR FSMYALTSLD PASEPISYVN ENSBTAP00000032322/1-721 IPVDLHLKTF VGYRSSTQFH VFELTRQLPR FSMYALTSPD PASEPLSYVN bmy_15085T0/1-806 VPVDLHLKTF VGYRSSTQFH VFELTRQLPR FSMYALTSPD SACEPLSYVN BACU001853/1-721 VPVDLHLKTF VGYRSSTQFH VFELTRQLPR FSMYALTSPD SASEPLSYVN 501 550 ENSTTRP00000012855/1-721 FIIAERAQRV FMWLNQNFLL PEDTNIQNVP FQVCFTSLRN GGQLCIKIKL ENSP00000245157/1-721 FTIAERAQRV VVWLGQNFLL PEDTHIQNAP FQVCFTSLRN GGHLHIKIKL ENSBTAP00000032322/1-721 FIIAERAQRV VMWLNQNFLL PEDTNIQNAP FQVCFTSLRN GGQLYIKIKL bmy_15085T0/1-806 FIIAERAQRV VMWLNQNFLL PEDTNIQNVP FQVCFTSLRN GGQLCIKIKL BACU001853/1-721 FIIAERAQRV VMWLNQNFLL PEDTNIQNVP FQVCFTSLRN GGQLCIKIKL 551 600 ENSTTRP00000012855/1-721 SGEITINTDD IDLAGDIIQS MASFFAIEDL QVEADFPVYF EELRKVLVKV ENSP00000245157/1-721 SGEITINTDD IDLAGDIIQS MASFFAIEDL QVEADFPVYF EELRKVLVKV ENSBTAP00000032322/1-721 SGEITVNTDD IDLAGDIIQS MASFFAIEDL QVEADFPVYF EELRKVLVKV bmy_15085T0/1-806 SGEITINTDD IDLAGDIVQS MASFFAIEDL QVEADFPVYF EELRKVLVK- BACU001853/1-721 SGEITINTDD IDLAGDIIQS MASFFAIEDL QVEADFPVYF EELRKVLVKV 601 650 ENSTTRP00000012855/1-721 DEYHSVHQKL SADMADNSNL IRSLLVRAED ARLMRDMRTM KNRYMELYDL ENSP00000245157/1-721 DEYHSVHQKL SADMADHSNL IRSLLVGAED ARLMRDMKTM KSRYMELYDL ENSBTAP00000032322/1-721 DEYHSVHQKL SADMADNSNL IRSLLVQAED ARLMRDMKTM KNRYMELYDL bmy_15085T0/1-806 ---------- -------PAI LR-------- -------KTM KNRYMELYDL BACU001853/1-721 DEYHSVHQKL SADMADNSNL IRSLLVRAED ARLMRDMKTM KNRYMELYDL 651 700 ENSTTRP00000012855/1-721 NKDLLNGYKI RSNNHTELLG SLKAVNQAIQ RAGRLRVGKP KNQVITACRD ENSP00000245157/1-721 NRDLLNGYKI RCNNHTELLG NLKAVNQAIQ RAGRLRVGKP KNQVITACRD ENSBTAP00000032322/1-721 NKDLLNGYKI RCNNHTELLG SLKAVNQAIQ RAGHLRVGKP KNQVITACRD bmy_15085T0/1-806 NKDLLNGYKI RCNNHTELLG SLKAVNQAIQ RAGRLRVGKP KNQVITACRD BACU001853/1-721 NKDLLNGYKI RCNNHTELLG SLKAVNQAIQ RAGRLRVGKP KNQVITACRD 701 750 ENSTTRP00000012855/1-721 AIRSNNINTL FRIMR----- ---------- ---------- ---------- ENSP00000245157/1-721 AIRSNNINTL FKIMR----- ---------- ---------- ---------- ENSBTAP00000032322/1-721 AIRSNNINML FRIMR----- ---------- ---------- ---------- bmy_15085T0/1-806 AIRSNNINTL FRIMRGASRF HKQLPDLAGA ATLAARFCST DLRIDSGIAS BACU001853/1-721 AIRSNNINTL FRIMR----- ---------- ---------- ---------- 751 800 ENSTTRP00000012855/1-721 ---------- ---------- ---------- ---------- ---------- ENSP00000245157/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032322/1-721 ---------- ---------- ---------- ---------- ---------- bmy_15085T0/1-806 YRFLFDSLNN SVSRLAGCNP FIQIVRRGVC SLPQNTDLHE TPETTQNTGL BACU001853/1-721 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000012855/1-721 ---------- ---------- ---------- -----VGTAS S--------- ENSP00000245157/1-721 ---------- ---------- ---------- -----VGTAS S--------- ENSBTAP00000032322/1-721 ---------- ---------- ---------- -----VGTAS S--------- bmy_15085T0/1-806 SSVGPLKNHL IKGHSVVLQP QNFLLTPKSI HGQGLKGSTC SKIIFYRPDL BACU001853/1-721 ---------- ---------- ---------- -----VGTAS S---------