KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:57 2014 Check: 00 .. Name: ENSP00000422496/1-682 Len: 741 Check: 1949 Weight: 1.00 Name: ENSBTAP00000032361/1-563 Len: 741 Check: 7747 Weight: 1.00 Name: ENSTTRP00000002139/1-656 Len: 741 Check: 4328 Weight: 1.00 Name: bmy_18881T0/1-681 Len: 741 Check: 9423 Weight: 1.00 Name: BACU006591/1-334 Len: 741 Check: 4495 Weight: 1.00 // 1 50 ENSP00000422496/1-682 MDAVLACRLR GRGNRVAALR PRPRPGGSAG PSPFALLCAG LSPEPRAGVG ENSBTAP00000032361/1-563 ---------- ---------- --VNW----- ---------- ---------- ENSTTRP00000002139/1-656 ---------- ---------- PRQRAERT-- ---FFLLCAG LSPEPRNVGS bmy_18881T0/1-681 ---------- ---------- --MLWGGE-- ---WSSLRRK VSTEPHQTLS BACU006591/1-334 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000422496/1-682 SE-------- -------FPA WFLGGSSQRR NMALLGSRAE LEADEDVFED ENSBTAP00000032361/1-563 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002139/1-656 EL-------- --------PV WFLGGGSRRR NMALVGNGAE LEADEDIFED bmy_18881T0/1-681 SLPKEQQLNE NMVASALRPI EVIHMREGKM EEEAEEEDEE EENKEDIFED BACU006591/1-334 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000422496/1-682 ALETISISSH SDMATSSLHF ASCDTQQAPR QRGASTVSSS SSTKVDLKSG ENSBTAP00000032361/1-563 ---------- ---------- ---------- ---------S LSTKVDLRSG ENSTTRP00000002139/1-656 ALETLSVPSR VDMATSSQHF SSFDTKQASG QHRTSNVKRS LSTKVDLRSG bmy_18881T0/1-681 ALETLSM--- ---------- ---------- ---------S LSTKVDLRSG BACU006591/1-334 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000422496/1-682 LEECAVALNL FLSNKFTDAL ELLRPWAKES MYHALGYSTI VVLQAVLTFE ENSBTAP00000032361/1-563 LEECAIALNL FLSNKFTDAL ELLRPWAKES MYHALGYSTI VVLQAVMTFE ENSTTRP00000002139/1-656 LEECAMALNL FLSNKFTDAL ELLRPWAKDS MYHALGYSTI VVLQAVMTFE bmy_18881T0/1-681 LEECAMALNL FLSNKFTDAL ELLRPWAKES MYHALGYSTI MVLQAVMTFE BACU006591/1-334 -----MALNL FLSNKFTDAL ELLRPWAKES MYHALGYSTI VVLQAVMTFE 201 250 ENSP00000422496/1-682 QQDIQNGISA MKDALQTCQK YRKKYTVVES FSSLLSRGSL EQLSEEEMHA ENSBTAP00000032361/1-563 QQDIQNGISA MKDALQTCQK YRKKCTVVES FSSLLSRGSL EQLTEEEMHA ENSTTRP00000002139/1-656 QQDIQNGISA MKDALQTCQK YRKKCTVVES FSSLLSRGSL EQLTEEEMHA bmy_18881T0/1-681 QQDIQNGISA MKDALQTCQK YRKKCTVVES FSSLLSRGSL EQLTEEEMHA BACU006591/1-334 QQDIQNGISA MKDALQTCQK YRKKCTVVES FSSLLSRGSL EQLTEEEMHA 251 300 ENSP00000422496/1-682 EICYAECLLQ KAALTFVQDE NMINFIKGGL KIRTSYQIY- ---------- ENSBTAP00000032361/1-563 EICYAECLLQ KAALTFVQDE NMINFIKGGL KIRTSYQIY- ---------- ENSTTRP00000002139/1-656 EICYAECLLQ KAALTFVQDE NMINFIKGGL KIRTSYQIY- ---------- bmy_18881T0/1-681 EICYAECLLQ KAALTFVQDE NMINFIKGGL KIRTSYQIYN VIVNLQYNCF BACU006591/1-334 EICYAECLLQ KAALTFVQDE NMINFIKGGL KIRTSYQIY- ---------- 301 350 ENSP00000422496/1-682 ---KECLSIL HEIQKNKLQQ EFFYEFEGGV KLGSGAFNLM LSLLPARIIR ENSBTAP00000032361/1-563 ---KECLSIL HVIQKNKVEQ QFFYEFEGGV KLGIGAFNLM LSLLPARIIR ENSTTRP00000002139/1-656 ---KECLSIL HVIQKNKVEQ QFFYEFEGGV KLGIGAFNLM LSLLPARIIR bmy_18881T0/1-681 LQSRECLSIL HVIQKNKGEQ QLFYEFEGGV KLGIGAFNLM LSLLPARIIR BACU006591/1-334 ---KECLSIL HVIQKNKVEQ QFFYEFEGGV KLGIGAFNL- ---------- 351 400 ENSP00000422496/1-682 LLEFIGFSGN RELGLLQLRE GASGRSMRSA LCCLTILAFH TYISLILGTG ENSBTAP00000032361/1-563 LLEFIGFSGN RELGILQLRE GALGRSIRSP LCCLTILAFH TYISLILGTG ENSTTRP00000002139/1-656 LLEFIGFSGN RELGILQLRE GALGRSMRSP LCCLTMLAFH TYISLILGTG bmy_18881T0/1-681 LLEFIGFSGN RELGILQLRE GALGRSMRSP LCCLTILAFH TYISLILGTG BACU006591/1-334 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000422496/1-682 EVNVAEAERL LAPFLQQFPN GSLVLFYHAR IELLKGNLEE AQEVFQKCIS ENSBTAP00000032361/1-563 EVNVVEAESL LEPYLQQFPN GSLVLFYHGR IELLKGNVEE AQEIFRKCIS ENSTTRP00000002139/1-656 EVNVVEAERL LEPYLQQFPN GSLMLFYHGR IELLKGNVEE AQEIFRKCIS bmy_18881T0/1-681 EVNVVEAETL LEPYLQQFPN GSLMLFYHGR IELLKGNVEE AQEIFRKCIS BACU006591/1-334 ---------- ---------- GSLMLFYHGR IELLKGNVEE ---------- 451 500 ENSP00000422496/1-682 VQEEWKQFHH LCYWELMWIN VFQQNWMQAY YYSDLLCKES KWSKATYVFL ENSBTAP00000032361/1-563 VQEEWKQFHH LCYWELMWIF VFQQNWREAY YYSDLLCKES RWSKATYVFL ENSTTRP00000002139/1-656 VQEEWKQFHH LCYWELMWIF VFQQNWREAY YYSDLLCKES KWSKATYVFL bmy_18881T0/1-681 VQEEWKQFHH LCYWELMWIF VFQQNWREAY YYSDLLCKES KWSKATYVFL BACU006591/1-334 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000422496/1-682 KAAILSMLPE EDVVATNENV VTLFRQVDSL KQRIAGKSIP TEKFAVRKAR ENSBTAP00000032361/1-563 KAAILSMLPE EDVVATKEDV VTLFRQVDGL KQRIAGKSIP TEKFAVRKAR ENSTTRP00000002139/1-656 KAAILSMLPE EDVVATKEDV VTLFRQVDGL KQRIAGKSIP TEKFAVRKAR bmy_18881T0/1-681 KAAILSMLPE EDVVATKEDV VTLFRQVDGL KQRIAGKSIP TEKFAVRKAR BACU006591/1-334 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000422496/1-682 RYSASLPAPV KLILPALEMM YVWNGFSIVS KRKDLSENLL VTVEKAEAAL ENSBTAP00000032361/1-563 RYSPSLPVPV KLVLPALEMM YVWNGFPLVS KRKDLSENLL VTVEKAEAAL ENSTTRP00000002139/1-656 RYSPSLPAPV KLVLPALEMM YVWNGFPLLS RRKDLSESLL VTVEKAEADL bmy_18881T0/1-681 RYSPSLPAPV KLILPALEMM YVWNGFPLVS KRKDLSENLL VTVEKAEADL BACU006591/1-334 ---------- -------EMM YVWNGFPLVS KRKDLSENLL VTVEKAEADL 601 650 ENSP00000422496/1-682 QSQ------- ---------- ---------- --NFNSFSVD DECLVKLLKG ENSBTAP00000032361/1-563 QSER------ ---------- ---------- --NYSNFRFP SIVLYYLLLN ENSTTRP00000002139/1-656 QSE------- ---------- ---------- --KSSDYSVD DECLVKLLKG bmy_18881T0/1-681 QSERKRVDEK AQETGTKRRN SKFVLFNKEP KQHSSDYSVD DECLVKLLKG BACU006591/1-334 QSE------- ---------- ---------- --NSSDYSVD DECLVKLLKG 651 700 ENSP00000422496/1-682 -CCLKNLQRP LQAELCYNHV VESEKLLKYD HYLVPFTLFE LASLYKSQGE ENSBTAP00000032361/1-563 CCCLKNLQRP LQAELCFNHI IQSEKLLKYD HYLVPFTLFE LAFLYKNQGE ENSTTRP00000002139/1-656 -CCLKNLQRP LQAELCFNHV VQSEKLLKYD HYLVPFTLFE LAFLYKNQGE bmy_18881T0/1-681 -CCLKNLQRP LQAELCFNHV VQSEKLLKYD HYLVPFTLFE LAFLYKNQGE BACU006591/1-334 -CCLKNLQRP LQAELCFNHV VQSEKLLKYD HYLVPFTLFE LAFLYKNQGE 701 750 ENSP00000422496/1-682 IDKAIKFLET ARNNYKDYSL ESRLHFRIQA ALHLWRKPSS D ENSBTAP00000032361/1-563 IDKAIKVLET ARNNYKDYSL ESRLHFRIQA ALHLWKKSSS D ENSTTRP00000002139/1-656 IDKAIKGLET ARNNYKDYSL ESRLHFRIQA ALHLWKKPSS D bmy_18881T0/1-681 IDKAIKVLET ARNNYKDYSL ESRLHFRIQA ALHLWKKSSS D BACU006591/1-334 IDKAIKVLET ARNNYKDYSL ESRLHFRIQA ALHLWKKSSS D