KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:42:00 2014 Check: 00 .. Name: ENSBTAP00000032365/1-1386 Len: 1620 Check: 2867 Weight: 1.00 Name: bmy_17211T0/1-1272 Len: 1620 Check: 9548 Weight: 1.00 Name: BACU001824/1-1373 Len: 1620 Check: 9599 Weight: 1.00 Name: ENSTTRP00000007963/1-1120 Len: 1620 Check: 6773 Weight: 1.00 // 1 50 ENSBTAP00000032365/1-1386 MLGWVQRVLP QPPGTPQKTK -QEEEGTEPE PELEPKPETA PEETELEEVS bmy_17211T0/1-1272 MLGWVQRVLP QPPGTPVKTK REEEEGAEPE PELEPEPETA PEETELEEEF BACU001824/1-1373 MLGWVHRVLP QPPGTPVKTK REEEEGAEPE PELEPEPETA PEETELEEES ENSTTRP00000007963/1-1120 MLGWVQRVLP QPPGTPV--K REEEEGAEPE PELEPEPETA PEETELEEES 51 100 ENSBTAP00000032365/1-1386 LPPEEPCVGK EVAAVTLGPQ GTQETALTPP TSLQAQVSVA PEAHSSPRGW bmy_17211T0/1-1272 LPPEEACVGK EVAEADPGPQ GGCPFSTHIP ---------- PGSGRCGSG- BACU001824/1-1373 L--------- ---------- ---------- ---------- ---------- ENSTTRP00000007963/1-1120 LPPEEACVGK EVAEADPGPQ ETQEAAPSPP TSLQAQAAVV PEANSPSSR- 101 150 ENSBTAP00000032365/1-1386 VLTWLRKGVE KVVPQPAHSS RPSQNIAAGL ESPDQQAGAQ ILGQCGT--- bmy_17211T0/1-1272 SEQWSQQPGA DLAQKGCGEG R--------- -----SAARP QWQACPEHRC BACU001824/1-1373 ---------- ---------- ---------- -----EAGGQ ILGHRST--- ENSTTRP00000007963/1-1120 VLTWLRKGVE KVVPQPVHSG M--------- -----EGPAQ ILGHCST--- 151 200 ENSBTAP00000032365/1-1386 ---GGS-DEP SEPSRAEDPG PGPWLLRWFE QNLEKMLPQP PKISEGWSDE bmy_17211T0/1-1272 WLGGSSSDGH SEAPRAQDNG PRPWLLRWLE QNLEKMLPQP PKTSEGWRDE BACU001824/1-1373 ---GGS-DGH SEAPRAQDNG PRSWLLRWLE QNLEKMLPQP PKTSEGWRDE ENSTTRP00000007963/1-1120 ---GGSADGH SEAPRAQDTG PGPWLLRWLE QNLEKMLPQP PKTSEGWRDE 201 250 ENSBTAP00000032365/1-1386 PTDAALGPEP PGPALEIKPM LQAQESPSLP APGPPEPEEE PIPEPQPTIQ bmy_17211T0/1-1272 PADAALGPEP PGPPLEMEPV PQAQESPSLP APAPPKPEEE PTPEPQPGIQ BACU001824/1-1373 PADAALGPEP PGPPLEMEPV PQAQESPSLP APAPPKPEEE PTPEPQPGIQ ENSTTRP00000007963/1-1120 PADAALGPEP PGPALEMEPV PQAQESPSLP APDPPKPEEE LTPEPQPGIQ 251 300 ENSBTAP00000032365/1-1386 ASSLPPPQDS ARLMAWILHR LEMALPQPVI RGKGGEQESD APVTCDVQTI bmy_17211T0/1-1272 ASSLPPPQDS ARLMAWLLHR LEMALPQPVI RGKAGEQEPD SPVTCDVQSI BACU001824/1-1373 ASSLPPPQPS ARLMAWLLHR LEMALPQPVI RGKAGEQEPD SPVTCDVQSI ENSTTRP00000007963/1-1120 ASSLPPTQDP ARLMAWLLHR LEMALPQPVV RGKAGEQEPD SPVTCDVQSI 301 350 ENSBTAP00000032365/1-1386 SILPGEQEES HLILEEVDPH WEEDEHQEGS TSTSPRTSEA APADEEKGEV bmy_17211T0/1-1272 SILPGEQEEP NLXLEDVDPP WEEDEHRE-- VSSSPQGAEA ASADEEESEV BACU001824/1-1373 TILPGEQEEP NLILEDVDPP WEEDEHRE-- VSSSPQGAEA APADEEESEV ENSTTRP00000007963/1-1120 SILPGEHEEP SLILEDVDPH WEEYEYQE-- V-SSPRGSEA APADEEESEE 351 400 ENSBTAP00000032365/1-1386 VEQTPRELPR IQEEKEDEEE EKEDGEEEEE EGREKEEEEG EEKEEEEGRE bmy_17211T0/1-1272 AEQMPRWEPE KALKKAVLGK ITGTWSCRRR PRPPAQEWLA WA-------- BACU001824/1-1373 VEQMPRELPQ IQEEKEDEEE EDAEEEEDAE EEEDAEEEED AEEEEDAEEE ENSTTRP00000007963/1-1120 VEQMPRELPQ IQEEKEDEEE EDGEEEEAD- ---------- ---------- 401 450 ENSBTAP00000032365/1-1386 KEEEEGEKKE EEGREKEEEE GGEKED-EEG REKEEEEGRG KEEEEGGEKE bmy_17211T0/1-1272 ---------- ---------- ---------- ---------- ---------- BACU001824/1-1373 EDAEEEEDGK EEEVAEEEED GKEEEDAEEE VAEEEEDGKE EDEEKEEEDG ENSTTRP00000007963/1-1120 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000032365/1-1386 EEEGRGKEEV EGREEEEDEE EEQDHSVLLD SYLVPQSEED QSEESETQDQ bmy_17211T0/1-1272 ---------- ---------- ---------- ---------- ---------- BACU001824/1-1373 KEEEDGKEEE VAEEEKEDRK EEDDEEKEEE DRKEEEDAEE EEDRKEEEDA ENSTTRP00000007963/1-1120 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000032365/1-1386 SEVGGAQAQG EVGGAQALSE ESETQDQSEV GGAQAQGEVG GAQ------E bmy_17211T0/1-1272 -----WRSEG P--GLCIVVP PAWISPVGPV GRQGFQRSLH TGFLWLPCRT BACU001824/1-1373 EEEEDEETEE P--DHSVLLD SCLVAQGGE- ---------- ---------D ENSTTRP00000007963/1-1120 ---------- ------VLLD SCLVAQGGE- ---------- ---------D 551 600 ENSBTAP00000032365/1-1386 QDGVGGAQDQ STSHQ----- ---------- ---------- ---------- bmy_17211T0/1-1272 QQGPGTW--- ---------- ---------- ---------- ---------- BACU001824/1-1373 QSGVGGTEHQ SASHQ----- ---------- ---------- ---------- ENSTTRP00000007963/1-1120 QSGVGGAERQ SASHQXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 601 650 ENSBTAP00000032365/1-1386 -------ELQ EEALADSSGV PATEEHPELQ VEDADADSRP LIAEENPPSP bmy_17211T0/1-1272 -------LLS DAVPSFLSPV PATEEHPEVQ VEDAVADSQP LYEEENPPSP BACU001824/1-1373 -------ELQ EEAAAASSGV PATEEHPEVQ VEDADADSQP LYEEENPPSP ENSTTRP00000007963/1-1120 XXXXXXXXXX XXXXXXXXXX PATEEHPELQ VEDADADSQP L--EENPPSP 651 700 ENSBTAP00000032365/1-1386 VQLPLSPAKS DTLAVPGSAT G--------- ----SLRKRL PSQDDEAEEL bmy_17211T0/1-1272 VPLPPSPAES DTPGLEGWCD GEGDGVDWGG QCPQTGRKRL CSQDDEAEEL BACU001824/1-1373 VPLPPSPAES DTPGAPGSAT G--------- ----SLRKRL CSQDDEAEEL ENSTTRP00000007963/1-1120 VPLPPSPAKC DTLGVPGSAT G--------- ----SLRKRL CSQDDEAEE- 701 750 ENSBTAP00000032365/1-1386 KMLSPAASPV VAWSDPTSPQ GTDDQDRATS TASQNSAIIN DRLQELVKLF bmy_17211T0/1-1272 KXLSPAXSPV VAWSDPTSPQ GTDDQDRAAS TASQTGTLIN DRLQELVKLF BACU001824/1-1373 KMLSPAVSPV VAWSDPNSLQ GTDDQDRAAS TASQTSTLIN DRLQELVKLF ENSTTRP00000007963/1-1120 --LSPAVSPV VACSDPTSPQ GTDDQDRAAS TDSQTSALIN NRLQELVKLF 751 800 ENSBTAP00000032365/1-1386 KERTEKVKEK LIDPDVTSDE ESPKPSPAKK APEPAPEVKP AEAGQVEEEH bmy_17211T0/1-1272 KERTEKVKEK LIDPDVTSDE ESPKPSPAKK APEPALXVKP AEAGQVEEEH BACU001824/1-1373 KERTEKVKEK LIDPDVTSDE ESPKPSPAKK APEPALDVKP AEAGQVEEEH ENSTTRP00000007963/1-1120 KERTEKVKEK LIDPDVTSDE ESPKPSPAKK APEPALDVKP AESGQVEEEH 801 850 ENSBTAP00000032365/1-1386 YCEMLCCKFK RRPWKKYQFP QSIDPLTNLM YILWLFFVVL AWNWNCWLIP bmy_17211T0/1-1272 YCEMLCCKFK RRPWKKYQFP QSIDPLTNLM YILWLFFVVL AWNWNCWLIP BACU001824/1-1373 YCEMLCCKFK RRPWKKYQFP QSIDPLTSLM YILWLFFVVL AWNWNCWLIP ENSTTRP00000007963/1-1120 YCEMLCCKFK RRPWKKYQFP QSIDPTTN-M YIVWLFFVVL AWNWNCWLI- 851 900 ENSBTAP00000032365/1-1386 VRWAFPYQTP DNIHLWLLMD YLCDLIYLLD ITVFQMRLQF VRGGDIITDK bmy_17211T0/1-1272 VRWAFPYQMP DNIHLWLLMD YLCDLIYLLD ITVFQLRLQF VRGGDVITDK BACU001824/1-1373 VRWAFPYQMP DNIHLWLLMD YLCDLIYLLD ITVFQLRLQF VRGGDIITDK ENSTTRP00000007963/1-1120 VRWAFPYQM- -DIH-FLLVD Y-CDFIYFLD ITVFQLRLQF VRGGDIITDK 901 950 ENSBTAP00000032365/1-1386 KEMRNNYVKS QRFKMDMLCL LPLDLLYLKF GVNPLLRLPR CLKYMAFFEF bmy_17211T0/1-1272 KEMRNNYLKS QRFKMDMLCL LPLDFLYLKF GVNPLLRLPR CLKYMAFFEF BACU001824/1-1373 KEMRNNYLKS QRFKMDMLCL LPLDFLYLKF GVNPLLRLPR CLKVRPSKAF ENSTTRP00000007963/1-1120 KEMRNNYLKS QRFKMDMLCL LPLDFLYLKF GVNPLLRLPR CLKYMAFFEF 951 1000 ENSBTAP00000032365/1-1386 NNRLESILSK AYVYRVIRTT AYLLYSLHLN SCLYYWASAY EGLGSTHWVY bmy_17211T0/1-1272 NERLESILSK AYIYRVIRTT AYLLYTLHVN SCLYYWASAH QGLGSTHWVY BACU001824/1-1373 SSFVLCTCSG --ILMVIRTT AYLLYTLHVN SCLYYWASAH EGLGSTHWVY ENSTTRP00000007963/1-1120 NNRLESILSK AYIYRVIRTT AYLLYSLHLN SCLYYWASAY EGLGSTHWVY 1001 1050 ENSBTAP00000032365/1-1386 DGVGNSYIRC YYWAVKTLIT IGGLPDPRTL FEIVFQGLNY FTGVFAFSVM bmy_17211T0/1-1272 DGMGNSYIRC YYWAVKTLIT IGGLPDPKTL FEIAFQGLNY FTGVFAFSVM BACU001824/1-1373 DGVGNSYIRC YYWAVKTLIT IGGLPDPKTL FEIAFQGLNY FTGVFAFSVM ENSTTRP00000007963/1-1120 DGVGNSYIRC YYWAVKTLIT IGGLPDPRTL FEIVFQGLNY FTGVFAFSVM 1051 1100 ENSBTAP00000032365/1-1386 IGQMRDVVGA ATAGQTYYRS CMDSTVKYMN FYKIPRSVQN RVKTWYEYTW bmy_17211T0/1-1272 IGQMRDVVGA ATAGKTYYRN CMDSTVKYMN FYKIPRSVQN RVKTWYEYTW BACU001824/1-1373 IGQMRDVVGA ATAGKTYYRN CMDSTVKYMN FYKIPRSVQN RVKTWYEYTW ENSTTRP00000007963/1-1120 IGQMRDVVGA ATAGETYYRS CMDSTVKYMN FYKIPRSVQN RVKTWYEYTW 1101 1150 ENSBTAP00000032365/1-1386 HSQGMLDESE LMVQLPDKMR LDLAIDVNYS IVSKVALFQG CDRQMIFDML bmy_17211T0/1-1272 HSQGMLDESE LMVQLPDKMR MDLAIDVNYD IVSKVALFQG CDRQMIFDML BACU001824/1-1373 HSQGMLDESE LMVQLPDKMR MDLAIDVNYD IVSKVALFQG CDRQMIFDML ENSTTRP00000007963/1-1120 HSQGMLDESE LMVQLPDKMR IVLAIDVNYN IVSK-ALFQR CDRQMIFDRQ 1151 1200 ENSBTAP00000032365/1-1386 KRLRSVVYLP NDYVCKKGEI GREMYIIQAG QVQVLGGPDG KSVLVTLKAG bmy_17211T0/1-1272 KRLRSVVYLP NDYVCKKGEI GREMYIIQAG QVQVLGGPDG KSVLVTLKAG BACU001824/1-1373 KRLRSVVYLP NDYVCKKGEI GREMYIIQAG QVQVLGGPDG KSILVTLKAG ENSTTRP00000007963/1-1120 KRLRSVVYLP NDYVCKKGEI GREMYIIQAG QVQVLGGPDG KSVLVTLKAG 1201 1250 ENSBTAP00000032365/1-1386 SVFGEI---- ---------- ---------- ---------- ---------- bmy_17211T0/1-1272 SVFGEIRSER GETRGPRQRL GKGGMASGWD HVLKGLSVGL RKPLCMQHWH BACU001824/1-1373 SVFGEI---- ---------- ---------- ---------- ---------- ENSTTRP00000007963/1-1120 SVFGEI---- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000032365/1-1386 -----SLLAV GGGNRRTANV VAHGFTNLFI LDKKDLNEIL VHYPESQKLL bmy_17211T0/1-1272 LLTYASLLAV GGGNRRTANV IAHGFTNLFI LDKKDLNEIL VHYPE----- BACU001824/1-1373 -----SLLAV GGGNRRTANV IAHGFTNLFI LDKKDLNEIL VHYPESEKLL ENSTTRP00000007963/1-1120 -----SLLAV GGGNRRTANV IAHGFTNLFI LDKKDLNDIL VHYPESQKLL 1301 1350 ENSBTAP00000032365/1-1386 RKKARRMLRN NNKPKEKSVL ILPPRAGTPK LFNAALAAAG KMGAKGGRGG bmy_17211T0/1-1272 -----RMLRN NNKPKEQSVL ILPPRAGTPK LFSAALAAAG KMGAKGAKGG BACU001824/1-1373 RKKARRMLRN DNKPKEQSVL ILPPRAGTPK LFSAALAAAG KMGAKGDKGG ENSTTRP00000007963/1-1120 RKKARRMLRN DNKPKEQSVL ILPPRPGTPK LFSATLAASG KMGAKGAKDG 1351 1400 ENSBTAP00000032365/1-1386 RLALLRARLK ELAALEAAAR QQQLLEQAKS SEDAAVGEEG SAAPEQPPAP bmy_17211T0/1-1272 KLAHLRARLK ELAALEAAAR QQQVLEQAKS SEDAA-GETG SATPKQP--- BACU001824/1-1373 KLAHLRARLK ELAALETAAR QQQVLEQAKS SEDAA-GETG SATPKQP--- ENSTTRP00000007963/1-1120 KLAHLRARLK ELAALEAAAR QQQVLEQ--- ---------- ---------- 1401 1450 ENSBTAP00000032365/1-1386 EPPAPEAPAP EPTAPEPLAP EAPAPEAPAP SSPPPASQER PEGDKEAAAR bmy_17211T0/1-1272 ---------- ---------- --AAPETPAP GSLPPASQGR SEGEEGGAAW BACU001824/1-1373 ---------- ---------- --AAPETPAP GSLPPASQGR SEGEEGGTAW ENSTTRP00000007963/1-1120 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000032365/1-1386 PEEHPVRIHV TLGPDPSEQI LLVEVPEKQE EKEKKEEETE EKEEGEEARK bmy_17211T0/1-1272 PEEGSVRIHM SPGPDPGEQI LLVEIPEKEE KEEEKEEKEE EKKEKKEEKE BACU001824/1-1373 PEEGSVRIHM SPGPDPGEQI LLVEIPEKEE KEEEKDKEEE EEEKEEEEGK ENSTTRP00000007963/1-1120 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSBTAP00000032365/1-1386 EKEEE----- ---------- ---------- ---------- ---------- bmy_17211T0/1-1272 ---------- ---------- ---------- ---------- ---------- BACU001824/1-1373 EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000007963/1-1120 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSBTAP00000032365/1-1386 ---------- ---------- ---------- ---------- ---------- bmy_17211T0/1-1272 ---------- ---------- ---------- ---------- ---------- BACU001824/1-1373 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000007963/1-1120 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSBTAP00000032365/1-1386 ---------- ---------- bmy_17211T0/1-1272 ---------- ---------- BACU001824/1-1373 XXXXAPSLPC SPAPLLPCSL ENSTTRP00000007963/1-1120 ---------- ----------