KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:01 2014 Check: 00 .. Name: bmy_17210T0/1-847 Len: 982 Check: 4597 Weight: 1.00 Name: ENSP00000368976/1-833 Len: 982 Check: 9192 Weight: 1.00 Name: ENSBTAP00000032379/1-833 Len: 982 Check: 540 Weight: 1.00 Name: BACU001825/1-883 Len: 982 Check: 3844 Weight: 1.00 Name: ENSTTRP00000009550/1-830 Len: 982 Check: 4576 Weight: 1.00 // 1 50 bmy_17210T0/1-847 GRAEPRALRR RRDPASTRPA ARRPEEAAEP RRAMVPSRRT WNLGATPSLR ENSP00000368976/1-833 ---------- ---------- ---------- ---MVPSRRT WNLGATPSLR ENSBTAP00000032379/1-833 ---------- ---------- ---------- ---MVPSRRT WNLGATPSLR BACU001825/1-883 ---------- ---------- ---------- ---------- --MGLSLSTV ENSTTRP00000009550/1-830 ---------- ---------- ---------- ---MVPSRRT WNLGATPSLR 51 100 bmy_17210T0/1-847 GLWRVGRAGE PEPGMAR--P APASPAARPF PHTGPGRLR- -TGRGRDSPA ENSP00000368976/1-833 GLWRVGRAPE PEPGMARPAP APASPAARPF PHTGPGRLR- -TGRGKDTPV ENSBTAP00000032379/1-833 GLWRVGRAGE PDPGMAR--P APASPAARPF PHTGPGRLRT GTGRGKDSPA BACU001825/1-883 QEW------- ---------- ---------- ---------- ---RGRDSPA ENSTTRP00000009550/1-830 GLWRVGRAGE PEPGMAR--P APASPAARPF PHTGPGRLR- -TGRGRDSPA 101 150 bmy_17210T0/1-847 GGDEDSSTRS AARPALAQCR ALSVDWASPG SPHRLYLTLQ QALRDKGCET ENSP00000368976/1-833 CGDEDSSARS AARPALAQCR ALSVDWAGPG SPHGLYLTL- ---------- ENSBTAP00000032379/1-833 GGDEDSGTRS AARPALAQCR ALSVDWAGPG SPHRLYLTL- ---------- BACU001825/1-883 GGDEDSSTRS AARPALAQCR ALSVDWASPG SPHRLYLTLQ QALRDKGCES ENSTTRP00000009550/1-830 GGDEDSSTRS AARPALAQCR ALSVDWASPG SPHRLYLTL- ---------- 151 200 bmy_17210T0/1-847 KSQGAKEEKL LKRQAPAPRR GREAQEAGGT MNVEKTGGRL FGSGRCSSLS ENSP00000368976/1-833 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032379/1-833 ---------- ---------- ---------- ---------- ---------- BACU001825/1-883 KSQGAKEEKL LKRQAPAPRR GREAQEAGGN MNVEKT---- ---------- ENSTTRP00000009550/1-830 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_17210T0/1-847 GPPGAAPVVH RMVEAMSQLQ EEKAQLQEEL VALRERLAVC GSEQQATSTQ ENSP00000368976/1-833 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032379/1-833 ---------- ---------- ---------- ---------- ---------- BACU001825/1-883 ---GAAPVVH RMVEAMSQLQ EEKAQLQEEL VALRERLAVC DSDQQATPTQ ENSTTRP00000009550/1-830 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_17210T0/1-847 LQNQVEHLKQ KLISQAQEVS RLRSELGGTD LEKHRDLLMV ENERLRQEMR ENSP00000368976/1-833 ---QVEHLKE KLISQAQEVS RLRSELGGTD LEKHRDLLMV ENERLRQEMR ENSBTAP00000032379/1-833 ---QVEHLKE KLISQAQEVS RLRSELGGTD LEKHRDLLMV ENERLRQEMR BACU001825/1-883 LHNQVEHLKQ KLVSQAQEVS RLRSELGGTD LEKHRDLLMV ENERLRQEMR ENSTTRP00000009550/1-830 ---QVEHLKQ KLISQAQEVS RLRSELGGTD LEKHRDLLIV ENERLRQEMR 301 350 bmy_17210T0/1-847 RCEAELQELR AKPAAPCTGC EHSQESAQLR DKLSQLQLEV AENKGLLSEL ENSP00000368976/1-833 RCEAELQELR TKPAGPCPGC EHSQESAQLR DKLSQLQLEM AESKGMLSEL ENSBTAP00000032379/1-833 RCEAELQELR AKPAAPCTGC EHSQESAQLR DRLSQLQLEV AENKGLLSEL BACU001825/1-883 RCEAELQELR AKPAAPCTGC EHSQESAQLR DKLSQLQLEV AENKGLLSEL ENSTTRP00000009550/1-830 RCEAELQDMR AKPAVPCTGC EHSQESAQLR DKLSQLQLEV AENKGLLSEL 351 400 bmy_17210T0/1-847 NLEVQQKTDR LAEVELRLKD CLAEKAQEEE RLSRRLRDSH ETIASLRAQS ENSP00000368976/1-833 NLEVQQKTDR LAEVELRLKD CLAEKAQEEE RLSRRLRDSH ETIASLRAQS ENSBTAP00000032379/1-833 NLEVQQKTDR LAEVELRLKD CLAEKAQEEE RLSRRLRDSH ETIASLRAQS BACU001825/1-883 NLEVQQKTDR LAEVELRLKD CLAEKAQEEE RLSRRLRDSH ETIASLRAQS ENSTTRP00000009550/1-830 NLEVQQKTDR LAEVELRLKD CLAEKAQEEE RLSRRLRDSH ETIASLRAQS 401 450 bmy_17210T0/1-847 PPVKYVMKTV EVESSKTRQA LSETQARNQH LQEQVAMQRQ VLKEMEQQLQ ENSP00000368976/1-833 PPVKYVIKTV EVESSKTKQA LSESQARNQH LQEQVAMQRQ VLKEMEQQLQ ENSBTAP00000032379/1-833 PPIKYVIKTV EVESSKTKQA LSESQARNQH LQEQVAMQRQ VLKEMEQQLQ BACU001825/1-883 PPVKYVMKTV EVESSKTRQA LSETQARNQH LQEQVAMQRQ VLKEMEQQLQ ENSTTRP00000009550/1-830 PPVKYVMKTV EVESSKTKQA LSESQARNQH LQEQVAMQRQ VLKEMEQQLQ 451 500 bmy_17210T0/1-847 SSHQLTAQLR AQIAMYESEL ERAHGQMLEE MQSLEEDKNR AIEEAFARAQ ENSP00000368976/1-833 SSHQLTARLR AQIAMYESEL ERAHGQMLEE MQSLEEDKNR AIEEAFARAQ ENSBTAP00000032379/1-833 SSHQLTAQLR AQIAMYESEL ERAHGQMLEE MQSLEEDKNR AIEEAFARAQ BACU001825/1-883 SSHQLTAQLR AQIAMYESEL EQAHGQMLEE MQSLEEDKNR AIEEAFARAQ ENSTTRP00000009550/1-830 SSHQLTAQLR AQITMYESEL ERAHGQMLEE MQSLEEDKNR AIEEAFARAQ 501 550 bmy_17210T0/1-847 VEMKAVHENL AGVRTNLLTL QPALRTLTND YNGLKRQVRG FPLLLQEALK ENSP00000368976/1-833 VEMKAVHENL AGVRTNLLTL QPALRTLTND YNGLKRQVRG FPLLLQEALR ENSBTAP00000032379/1-833 VEMKAVHENL AGVRTNLLTL QPALRTLTND YNGLKRQVRG FPLLLQEALK BACU001825/1-883 VEMKAVHENL AGVRTNLLTL QPALRTLTND YNGLKRQVRG FPLLLQEALK ENSTTRP00000009550/1-830 VEMKAVHENL AGVRTNLLTL QPALRTLTND YNGLKRQVRG FPLLLQEALK 551 600 bmy_17210T0/1-847 SVKAEIGQAI DEVNSNNQEL LRKYRRELQL RKKCHNELVR LKGNIRVIAR ENSP00000368976/1-833 SVKAEIGQAI EEVNSNNQEL LRKYRRELQL RKKCHNELVR LKGNIRVIAR ENSBTAP00000032379/1-833 SVKAEIGQAI EEVNSNNQEL LRKYRRELQL RKKCHNELVR LKGNIRVIAR BACU001825/1-883 SVKAEIGQAI DEVNSNNQEL LRKYRRELQL RKKCHNELVR LKGNIRVIAR ENSTTRP00000009550/1-830 SVKAEIGQAI DEVNSNNQEL LRKYRRELQL RKKCHNELVR LKGNIRVIAR 601 650 bmy_17210T0/1-847 VRPVTREDGE GPEATNAVTF DPDDDSIIHL LHRGKPVSFE LDKVFSPKAS ENSP00000368976/1-833 VRPVTKEDGE GPEATNAVTF DADDDSIIHL LHKGKPVSFE LDKVFSPQAS ENSBTAP00000032379/1-833 VRPVTKEDGE GPEATNAVTF DPDDDSIIHL LHKGKPVSFE LDKVFSSQAS BACU001825/1-883 VRPVTREDGE GPEATNAVTF DPDDDSIIHL LHRGKPVSFE LDKVFSPKAS ENSTTRP00000009550/1-830 VRPVTKEDGE GPEATNAVTF DPDDDSIIHL LHKGKPVSFE LDKVFSPKAS 651 700 bmy_17210T0/1-847 QQDVFQEVQA LITSCIDGFN VCIFAYGQTG AGKTYTMEGT LENPGINQRA ENSP00000368976/1-833 QQDVFQEVQA LVTSCIDGFN VCIFAYGQTG AGKTYTMEGT AENPGINQRA ENSBTAP00000032379/1-833 QQDVFQEVQA LITSCIDGFN VCIFAYGQTG AGKTYTMEGT PENPGINQRA BACU001825/1-883 QQDVFQEVQA LITSCIDGFN VCIFAYGQTG AGKTYTMEGT LENPGINQRA ENSTTRP00000009550/1-830 QQDVFQEVQA LITSCIDGFN VCIFAYGQTG AGKTYTMEGT LENPGINQRA 701 750 bmy_17210T0/1-847 LQLLFSEVQE KASDWEYTIT VSAAEIYNEV LRDLLGQEPQ EKLEIRLCPD ENSP00000368976/1-833 LQLLFSEVQE KASDWEYTIT VSAAEIYNEV LRDLLGKEPQ EKLEIRLCPD ENSBTAP00000032379/1-833 LRLLFSEVQE KASDWEYTIT VSAAEIYNEV LRDLLGQEPQ EKLEIRLCPD BACU001825/1-883 LQLLFSEVQE KASDWEYTIT VSAAEIYNEV LRDLLGQEPQ EKLEIRLCPD ENSTTRP00000009550/1-830 LQLLFSEVQE KASDWEYTIT VSAAEIYNEV LRDLLGQEPQ EKLEIRLCPD 751 800 bmy_17210T0/1-847 GSGQLYVPGL TEFQVQSVED INKVFEFGHT NRTTEFTNLN EHSSRSHALL ENSP00000368976/1-833 GSGQLYVPGL TEFQVQSVDD INKVFEFGHT NRTTEFTNLN EHSSRSHALL ENSBTAP00000032379/1-833 GSGQLYVPGL TEFQVQSVED INKVFEFGHT NRTTEFTNLN EHSSRSHALL BACU001825/1-883 GSGQLYVPGL TEFQVQSVED INKVFEFGHT NRTTEFTNLN EHSSRSHALL ENSTTRP00000009550/1-830 GSGQLYVPGL TEFQVQSVED INKVFEFGHT NRTTEFTNLN EHSSRSHALL 801 850 bmy_17210T0/1-847 IVTVHGVDGS TGLRTTGE-- ---------- ---------- ---------- ENSP00000368976/1-833 IVTVRGVDCS TGLRTTGKLN LVDLAGSERV GKSGAEGSRL REAQHINKSL ENSBTAP00000032379/1-833 IVTVRGVDCS TGLRTTGKLN LVDLAGSERV GKSGAEGSRL REAQHINKSL BACU001825/1-883 IVTVHGVDGS TGLRTTGKLN LVDLAGSERV GKSGAEGSRL REAQHINKSL ENSTTRP00000009550/1-830 IVTVHGVDGS TGLRTTGKLN LVDLAGSERV GKSGAEGSRL REAQHINKSL 851 900 bmy_17210T0/1-847 ---------- ---------- ---------- ---------- ---------- ENSP00000368976/1-833 SALGDVIAAL RSRQGHVPFR NSKLTYLLQD SLSGDSKTLM VVQVSPVEKN ENSBTAP00000032379/1-833 SALGDVIAAL RSRQGHVPFR NSKLTYLLQD SLSGDSKTLM VVQVSPVEKN BACU001825/1-883 SALGDVIAAL RSRQGHVPFR NSKLTYLLQD SLSGDSKTLM VVQVSPVEKN ENSTTRP00000009550/1-830 SALGDVIAAL RSRQGHVPFR NSKLT-LLQD SLSGDSKTLM VVQVSPVEKN 901 950 bmy_17210T0/1-847 ---------- ---------- ---------- ---------- ---RGPQPPG ENSP00000368976/1-833 TSETLYSLKF AERVRSVELG PGLRRAELGS WSSQEHLEWE PACQTPQPSA ENSBTAP00000032379/1-833 TSETLYSLKF AERVRSVELG PGSRRTELGS WSSQEHLEWE SACQTPQPSA BACU001825/1-883 TSETLYSLKF AERVRSVELG PGSRRAELGS WSSQEHLEWE PACQTPQPSA ENSTTRP00000009550/1-830 TSETLYSLKF AERVRSVELG PGSRRAELVS WSSQEHLEWE PACQTPQPSA 951 1000 bmy_17210T0/1-847 LSH--PRSPT PTSPGAALTR PAPSPQGS-- -- ENSP00000368976/1-833 RAHSAPSSGT SSRPGSIRRK LQPSGKSRPL PV ENSBTAP00000032379/1-833 RAHSAPGSGT TSRPGSIRRK LQPSGKSRPL PV BACU001825/1-883 RAHSAPGSGT TSRPGSIRRK LQPSGKSRPL PV ENSTTRP00000009550/1-830 RAHSAPGSGT TSRPGSIRRK LQPSGKSRPL PV