KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:04 2014 Check: 00 .. Name: ENSBTAP00000032458/1-503 Len: 550 Check: 2714 Weight: 1.00 Name: ENSP00000376902/1-519 Len: 550 Check: 1606 Weight: 1.00 Name: ENSTTRP00000001298/1-512 Len: 550 Check: 2548 Weight: 1.00 Name: bmy_18290T0/1-404 Len: 550 Check: 6850 Weight: 1.00 Name: BACU004300/1-400 Len: 550 Check: 5557 Weight: 1.00 // 1 50 ENSBTAP00000032458/1-503 ---------- ---------- ---MMSEQDL ADVVQIAVEE LSPGHPVVLE ENSP00000376902/1-519 ---------- ---------- ---MMSEHDL ADVVQIAVED LSPDHPVVLE ENSTTRP00000001298/1-512 TGVTETPCGE SDSCPLTGHS PSWMMSEQDL ADVVQIAVEE LSPDHPVVLE bmy_18290T0/1-404 ---------- ---------- ---MVGE--- ---LSSTAAS LTPP------ BACU004300/1-400 ---------- ---------- ---M------ ---------- ---------- 51 100 ENSBTAP00000032458/1-503 NHVVTDEDEP ALKRQRLEIN CQDPSIKSFL YSINQTICLR LDSIEAKLQA ENSP00000376902/1-519 NHVVTDEDEP ALKRQRLEIN CQDPSIK--- -----TICLR LDSIEAKLQA ENSTTRP00000001298/1-512 NHVVTDEDEP ALKRQRLEIN CQDPSIK--- -----TICLR LDSIEAKLQA bmy_18290T0/1-404 ----LGEAAP GPEQPR---- ---------- ---------- ---------- BACU004300/1-400 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000032458/1-503 LEATCKSLEE KLDLVTNKQH SPIQVPMVAG SPLGATQTCN KVRCVVPQTT ENSP00000376902/1-519 LEATCKSLEE KLDLVTNKQH SPIQVPMVAG SPLGATQTCN KVRCVVPQTT ENSTTRP00000001298/1-512 LEATCKSLEE KLDLVTNKQH SPIQVPMVAG SPLGATQTCN KVRCVVPQTT bmy_18290T0/1-404 ---SCGTHRN PLAYISDFEC AHVHRDVLSG ---------- ----VVPQTT BACU004300/1-400 ---------- ---------- -------VAG SPLGATQTCN KVRCVVPQTT 151 200 ENSBTAP00000032458/1-503 VILNSDRQNA VVAKMEDPLS GRAPEPLENV ISNAVPGRRQ NTIVVKVPGQ ENSP00000376902/1-519 VILNNDRQNA IVAKMEDPLS NRAPDSLENV ISNAVPGRRQ NTIVVKVPGQ ENSTTRP00000001298/1-512 VILNSDRQNA VVAKMEDPLS GRAPDPLENI ISNAVPGRRQ NTIVVKVPGQ bmy_18290T0/1-404 VILNSDRQNA VVAKMEDPLS GRAPDPLENI ISNAVPGRRQ NTIVVKVPGQ BACU004300/1-400 VILNSDRQNA VVAKMEDPLS GRAPDPLENI ISNAVPGRRQ NTIVVKVPGQ 201 250 ENSBTAP00000032458/1-503 EDSHNEDGES GSEASDSVSN CGQSGSQNIG NNVTLITLNS EEDYPNGTWL ENSP00000376902/1-519 EDSHHEDGES GSEASDSVSS CGQAGSQSIG SNVTLITLNS EEDYPNGTWL ENSTTRP00000001298/1-512 EDSHNEDGES GSEASDSVSN C-QSGSQ-IG N----VLIVN SEDYPNGTWL bmy_18290T0/1-404 EDSHNEDGES GSEASDSVSN CGQSG----- ---------- -KDYPNGTWL BACU004300/1-400 EDSHNEDGES GSEASDSVSN CGQSGSQSIG SNVTLITLNS EEDYPNGTWL 251 300 ENSBTAP00000032458/1-503 GDENNPEMRV RCAIIPSDML HISTNCRTAE KMALTLLDYL FHREVQAVSN ENSP00000376902/1-519 GDENNPEMRV RCAIIPSDML HISTNCRTAE KMALTLLDYL FHREVQAVSN ENSTTRP00000001298/1-512 GDENNPEMRV RCAIIPSDML HISTNCRTAE KMALTLLDYL FHREVQAVSN bmy_18290T0/1-404 GDENNPEMRV RCAIIPSDML HISTNCRTAE KMALTLLDYL FHREVQAVSN BACU004300/1-400 GDENNPEMRV RCAIIPSDML HISTNCRTAE KMALTLLDYL FHREVQAVSN 301 350 ENSBTAP00000032458/1-503 LSGQGKHGKK QLDPLTIYGI RCHLFYKFGI TESDWYRIKQ SIDSKCRTAW ENSP00000376902/1-519 LSGQGKHGKK QLDPLTIYGI RCHLFYKFGI TESDWYRIKQ SIDSKCRTAW ENSTTRP00000001298/1-512 LSGQGKHGKK QLDPLTIYGI RCHLFYKFGI TESDWYRIKQ SIDSKCRTAW bmy_18290T0/1-404 LSGQGKHGKK QLDPLTIYGI RCHLFYKFGI TESDWYRIKQ SIDSKCRTAW BACU004300/1-400 LSGQGKHGKK QLDPLTIYGI RCHLFYKFGI TESDWYRIKQ SIDSKCRTAW 351 400 ENSBTAP00000032458/1-503 RRKQRGQSLA VKSFSRRTPS SSSYGASETM MSTPPPSSEL QQPP--PQAL ENSP00000376902/1-519 RRKQRGQSLA VKSFSRRTPN SSSYCPSEPM MSTPPPASEL PQPQPQPQAL ENSTTRP00000001298/1-512 RRKQRGQSLA VKSFSRRTPS SSSYGASETM MSTPPPASEL QQPP--PQAL bmy_18290T0/1-404 RRKQRGQSLA VKSFSRRTPS SSSYGASETM MSTPPPASEL QQPP--PQAL BACU004300/1-400 RRKQRGQSLA VKSFSRRTPS SSSYGASETM MSTPPPASEL QQPP--PQAL 401 450 ENSBTAP00000032458/1-503 HYALANAQQV QIHQIGEDGQ VQVGHLHIAQ VPQGEQVQIT QDSEGNLQIH ENSP00000376902/1-519 HYALANAQQV QIHQIGEDGQ VQVGHLHIAQ VPQGEQVQIT QDSEGNLQIH ENSTTRP00000001298/1-512 HYALANAQQV QIHQIGEDGQ VQVGHLHIAQ VPQGEHVQIT QDSEGNLQIH bmy_18290T0/1-404 HYALANAQQV QIHQIGEDGQ ---GHLHIAQ VPQGEQVQIT QDSE------ BACU004300/1-400 HYALANAQQV QIHQIGEDGQ VQVGHLHIAQ VPQGEQVQIT QDSEGNLQIH 451 500 ENSBTAP00000032458/1-503 HVGQD----- ---------- -------GQE LGQKQACNRQ APNPTATRLR ENSP00000376902/1-519 HVGQDGQLLE ATRIPCLLAP SVFKASSGQV LQGAQLIAVA SSDPAAAGVD ENSTTRP00000001298/1-512 HVGQD----- ---------- -------GQV LQGAQLIAVA SSDPAATGVD bmy_18290T0/1-404 ---------- ---------- ---------V LQGAQLIAVA SSDPAATGVD BACU004300/1-400 HVGQD----- ---------- -------GQV LQGAQLIAVA SSDPAATGVD 501 550 ENSBTAP00000032458/1-503 HSPCAGTLCE LVPLGATPIR HHTAPAQAAD ALQPTLQPEM QLEHGAIQIQ ENSP00000376902/1-519 GSPLQGSDIQ VQYVQLAPVS DHTAGAQTAE ALQPTLQPEM QLEHGAIQIQ ENSTTRP00000001298/1-512 GSPLQGSDIQ VQYVQLAPVT DHTAAAQAAD ALQPTLQSEM QLEHGAIQIQ bmy_18290T0/1-404 GSPLQGSDIQ VQYVQLAPVT DHTAAAQAAD ALQPTLQSEM QLEHGAIQIQ BACU004300/1-400 GSPLQGSDIQ VQYVQLAPVT DHTAAAQAAD ALQPTLQSEM QLEHGAIQIQ