KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:04 2014 Check: 00 .. Name: ENSP00000388320/1-515 Len: 581 Check: 911 Weight: 1.00 Name: ENSBTAP00000032466/1-501 Len: 581 Check: 2414 Weight: 1.00 Name: ENSTTRP00000005933/1-546 Len: 581 Check: 4989 Weight: 1.00 Name: bmy_20971T0/1-465 Len: 581 Check: 7062 Weight: 1.00 Name: BACU019146/1-525 Len: 581 Check: 2107 Weight: 1.00 // 1 50 ENSP00000388320/1-515 ---MCQVGED YGEPAPEEPP PAPRPSREQK CVKCKEAQPV VVIRAGDAFC ENSBTAP00000032466/1-501 ---MCEMSEE YRESAPKGPP PPRLGTGDQK CVKCKEGLPV VVIRAGDAFC ENSTTRP00000005933/1-546 GAAMCEVGED YWEPAPAGPA A--RPCREQK CVKCKEGLPV VVIRAGDAFC bmy_20971T0/1-465 ---MCEVGED YRAPA-GQPP P--RPGREQK CVKCKEGLPV VVIRAGDAFC BACU019146/1-525 ---------- ---------- ---------- -----DGLGS VAAAAGGLCC 51 100 ENSP00000388320/1-515 RDCFKAFYVH KFRAMLGKNR LIFPGEKVLL AWSGGPSSSS MVWQVLEGLS ENSBTAP00000032466/1-501 RDCFKALYVH KFRAMLGKSR LIFPGEKVLL AWSGGPSSSS MVWQVLEGLS ENSTTRP00000005933/1-546 RDCFKVFYVH KFRAVLGKNR LVFPGEKVLL AWSGGPSSSS MLWQVLEGLS bmy_20971T0/1-465 RDCFKAFYVH KFRAVLGKNR LIFPGEK--- ---------- -------GLS BACU019146/1-525 RDCFKAFYVH KFRAVLGKNR LIFPGEKVLL AWSGGPSSSS VLWQVLEGLS 101 150 ENSP00000388320/1-515 QDSAKRLRFV AGVIFVD--- ---------- ---------- ---------- ENSBTAP00000032466/1-501 RDSAKRLRFV PGVVYID--- ---------- ---------- ---------- ENSTTRP00000005933/1-546 QDSAKRLRFV PGVVFAD--- ---------- --PTKTENPQ PLKRPARHRS bmy_20971T0/1-465 RDSAKRLRFV PGVVYAD--- ---------- ---------- ---------- BACU019146/1-525 RDSAKRLRFV PGVVYADVRR ESSLPFSAPL LSPTKTENPP ATLKMPSKRS 151 200 ENSP00000388320/1-515 ---------- ---------- -----EGAAC GQSLEERSKT LAEVKPILQA ENSBTAP00000032466/1-501 ---------- ---------- -----EGAAC GQSPEDRART LAEVKLALQT ENSTTRP00000005933/1-546 ASRDCCPQGA VALALPCSPF CLRFSEGAAC GQSPEDRAKT LAEAKLVLQT bmy_20971T0/1-465 ---------- ---------- -----EGAAC GQSPEDRAKT LAEARLVLQT BACU019146/1-525 ASRDCCPPGC NGLG-PYSPF CLRFSEGAAC GQSPEDRAET VAEAKLVLQS 201 250 ENSP00000388320/1-515 TGFPWHVVAL EEVFSLPPSV LWCSAQELVG SEGAYKAAVD SFLQQQHVLG ENSBTAP00000032466/1-501 TGFPWHAVAL EEVFSLPPSA LRCSAQEAAG TEGAYKAAVD SFLQQQHALG ENSTTRP00000005933/1-546 VGFPWHIVAL EEVFSLPPSV LRCSAREPVG TEGAYKAAVD SFLQQHHVLG bmy_20971T0/1-465 VGFPWHIVAL E--------- ------EPVG TEGAYKAAVD SFLQQQHALG BACU019146/1-525 VGFPWHIVAL EEVGSLPPSV LRCSAREPVG TEGAYKAAVD SFLQQQHALG 251 300 ENSP00000388320/1-515 AGGGPGPTQG EEQPPQPPLD PQNLARPPAP AQTEALSQLF CSVRTLTAKE ENSBTAP00000032466/1-501 TNG------V ERQSQHCAQD PQSPTGPPTT AQTQALSRLF DSVKTLTAKE ENSTTRP00000005933/1-546 ---------G EAEPAL-PPH PQGRAGPPTA GQTEALSRLF NSVKTLTAKE bmy_20971T0/1-465 ---------G EQQSQPCPQR PPSRAGPPTA GQTEALSTLF NSVETLTAKE BACU019146/1-525 ---------E EQQSLPCPPR PPIRAGPPTA GQTEALSTLF SSVETLTAKE 301 350 ENSP00000388320/1-515 ELLQTLRTHL ILHMARAHGY SKVMTGDSCT RLAIKLMTNL ALGRGAFLAW ENSBTAP00000032466/1-501 ELLQTLRTHL ILHVARNHGY SKVMTGDSCT RLAIKLMTSL ALGRGAFLAW ENSTTRP00000005933/1-546 ELLQTLRTHL ILHVARTHGY SKVMTGDSCT RLAVKLMTSL ALGRGAFLAW bmy_20971T0/1-465 ELLQTLRTHL ILHVARTHGY SKVMMGDSCT RLAIKLMTSL ALGRGAFLAW BACU019146/1-525 ELLRTLRTHL ILHVARTHGY SKVMMGDSCT RLAIKLMTSL ALGRGAFLAW 351 400 ENSP00000388320/1-515 DTGFSDERHG DVVVVRPMRD HTLKEVAFYN RLFSVPSVFT PAVDTKAPEK ENSBTAP00000032466/1-501 DTGFSDERHG DVVVVRPMRE HTLKEVAFYN RLFAVPSICT PALDTKAPEK ENSTTRP00000005933/1-546 DTGFSDERHG DVVVVRPMRE HTLKEVAFYN RLFAVPSVFT PAVDTKAPEK bmy_20971T0/1-465 DTGFSDERHG DVVVVRPMRE HTLKEVAFYN RLFAVPSVFT PAVDTKAPEK BACU019146/1-525 DTGFSDERHG DVVVVRPMRE HTLKEVAFYN RLFAVPSVFT PAVDTKAPEK 401 450 ENSP00000388320/1-515 ASIHRLMEAF ILRLQTQFPS TVSTVYRTSE KLVKGPRDGP AAGDSGPRCL ENSBTAP00000032466/1-501 ASIHRLMEAF ILRLQAQFPS TVSTVYRTSE KLVKAPRAGC AAG---PRCL ENSTTRP00000005933/1-546 ASIHRLMEAF ILRLQAQFPS TVSTVYRTSE KLVKAPRDGC AAGTPGPRCL bmy_20971T0/1-465 ASIHRLMEAF ILRLQAQFPS TVSTVYRTSE KLVKAPRDGC AAGTPGPRCL BACU019146/1-525 ASIHRLMEAF ILRLQAQFPS TVSTVYRTSE KLVKAPRDGC AAGTPGPRCL 451 500 ENSP00000388320/1-515 LCMCALDVDA ADSATAFGAQ TSSRLSQMQS PIPLTETRTP PGPCCSPGVG ENSBTAP00000032466/1-501 LCMCTLDVDT ADSATAFGAQ T-SHLPQMQT PV--TQARAA AGPCCCAGMG ENSTTRP00000005933/1-546 LCMCVLDVDT ADSATAFGAQ TSSQLPQTQP PV--AEAEAP TVSCCHSGMG bmy_20971T0/1-465 LCMCVLDVDT ADSATAFGAQ TSSQLPQTQP PV--AQAEAP TVSCCCTGMG BACU019146/1-525 LCMCVLDVDT ADSATAFGAQ TSSQLPQTQP PV--AQAEAP -VSCCCTRMG 501 550 ENSP00000388320/1-515 WAQRCGQGAC RRE-DPQACI EEQLCYSCRV NMKDLPSLDP LPPYILAEAQ ENSBTAP00000032466/1-501 GAPGC----C KRE-DPRAQV MEQLCYGCRV NMKDLPSLEL LPPYILSEAQ ENSTTRP00000005933/1-546 RAQHC----C RMEADPRACV TAQLCYGCRV NMKDLPSLDP LPPYILAEAQ bmy_20971T0/1-465 GARPC----C RTEEDPRARV IEQLCYGCRV NMKDLPSLDP LPPYILAEAQ BACU019146/1-525 GARHC----C RTEEDPRARV IEQLCYGCRV NMKDLPSLDP LPPYILAEAQ 551 600 ENSP00000388320/1-515 LRTQRAWGLQ EIRDCLIEDS DDE---AGQS - ENSBTAP00000032466/1-501 LRSQRATAEQ EIREYLLGDS EDE-AGTGES - ENSTTRP00000005933/1-546 LRSQRAEAEQ EIQERLLE-A EDG-ARPGAT S bmy_20971T0/1-465 LRSRRAEAEQ -IQEYLLEDR EDEDARPGES - BACU019146/1-525 LRSQRAEAEQ -IQEYLLEDR EDEDARPG-- -