KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:06 2014 Check: 00 .. Name: ENSTTRP00000003793/1-1198 Len: 1207 Check: 2996 Weight: 1.00 Name: bmy_16076T0/1-1144 Len: 1207 Check: 4245 Weight: 1.00 Name: ENSP00000417257/1-1198 Len: 1207 Check: 8844 Weight: 1.00 Name: ENSBTAP00000032499/1-1198 Len: 1207 Check: 5286 Weight: 1.00 Name: BACU012203/1-1198 Len: 1207 Check: 450 Weight: 1.00 // 1 50 ENSTTRP00000003793/1-1198 MAEHSPLLDT TQILSSDISL LSAPIVSADG TQQVILVQVN PGEA----FT bmy_16076T0/1-1144 ---------- MHHVTRSKDL FLSQLRKKKK KKTERSRRRS PIKAVNVYYA ENSP00000417257/1-1198 MAEHPPLLDT TQILSSDISL LSAPIVSADG TQQVILVQVN PGEA----FT ENSBTAP00000032499/1-1198 MAEHPPLLDT TQILSSDISL LSAPIVSADG TQQVILVQVN PGEA----FT BACU012203/1-1198 MAEHPPLLDT TQILSSDISL LSAPIVSADG TQQVILVQVN PGEA----FT 51 100 ENSTTRP00000003793/1-1198 IRREDGQFQC -----ITGPA QVPMMSPNGS VPPIYVPPGY APQVIEDNGV bmy_16076T0/1-1144 VSLLDFLLCC YCKNKMSGPA QVPMMSPNGS VPPIYVPPGY APQVIEDNGV ENSP00000417257/1-1198 IRREDGQFQC -----ITGPA QVPMMSPNGS VPPIYVPPGY APQVIEDNGV ENSBTAP00000032499/1-1198 IRREDGQFQC -----ITGPA QVPMMSPNGS VPPIYVPPGY APQVIEDNGV BACU012203/1-1198 IRREDGQFQC -----ITGPA QVPMMSPNGS VPPIYVPPGY APQVIEDNGV 101 150 ENSTTRP00000003793/1-1198 RRVVVVPQAP EFHPGGHTVI HRSPHPPLPG FIPVPTMMPP PPRHMYSPVT bmy_16076T0/1-1144 RRVVVVPQAP EFHPGGHTVI HRSPHPPLPG FIPVPTMMPP PPRHMYSPVT ENSP00000417257/1-1198 RRVVVVPQAP EFHPGSHTVL HRSPHPPLPG FIPVPTMMPP PPRHMYSPVT ENSBTAP00000032499/1-1198 RRVVVVPQAP EFHPGGHTVI HRSPHPPLPG FIPVPTMMPP PPRHMYSPVT BACU012203/1-1198 RRVVVVPQAP EFHPGGHTVI HRSPHPPLPG FIPVPTMMPP PPRHMYSPVT 151 200 ENSTTRP00000003793/1-1198 GAGDMATQYM TQYQSSQVYG DVDAHSTHGR SNFRDERSSK TYERLQKKLK bmy_16076T0/1-1144 GAGDMATQYM TQYQSSQVYG DVDAHSTHGR SNFRDERSSK TYERLQKKLK ENSP00000417257/1-1198 GAGDMTTQYM PQYQSSQVYG DVDAHSTHGR SNFRDERSSK TYERLQKKLK ENSBTAP00000032499/1-1198 GAGDMATQYM APYQSSQVYG DVDAHSSHGR SNFRDERSSK TYERLQKKLK BACU012203/1-1198 GAGDMATQYM TQYQSSQVYG DVDAHSTHGR SNFRDERSSK TYERLQKKLK 201 250 ENSTTRP00000003793/1-1198 DRQGTQKDKM NSPPSSPQKC PSPINEHNGL MKGQNASGVN IGSAKNKSGR bmy_16076T0/1-1144 DRQGTQKDKM NSPPSSPQKC PSPINEHNGL MKGQNASGVN IGSAKNKSGR ENSP00000417257/1-1198 DRQGTQKDKM SSPPSSPQKC PSPINEHNGL IKGQIAGGIN TGSAKIKSGK ENSBTAP00000032499/1-1198 DRQGTQKDKM SSPPSSPQKC PSPISEHNGL TKGQNASGTN TGSVKNKSGK BACU012203/1-1198 DRQGTQKDKM NSPPSSPQKC PSPINEHNGL MKGQNASGVN IGSAKNKSGR 251 300 ENSTTRP00000003793/1-1198 GKGGAQIDTE IEXXXXXXXX XXXXXXXXXX XXASDIQART VVLTWSPPSS bmy_16076T0/1-1144 GKGGAQIDTE IEEKDEETKA FEALLSNIVK PVASDIQART VVLTWSPPSS ENSP00000417257/1-1198 GKGGTQVDTE IEEKDEETKA FEALLSNIVK PVASDIQART VVLTWSPPSS ENSBTAP00000032499/1-1198 GKGGAQVDTE IEEKDEETKA FEALLSNIVK PVASDIQART VVLTWSPPSS BACU012203/1-1198 GKGGAQIDTE IEEKDEETKA FEALLSNIVK PVASDIQART VVLTWSPPSS 301 350 ENSTTRP00000003793/1-1198 LINGETDETT VPELYGYEIL VSSTGKDGKY KSVYAGEETS VTLNDLKPAT bmy_16076T0/1-1144 LINGETDETT VPELYGYEIL VSSTGKDGKY KSVYAGEETS VTLNDLKPAT ENSP00000417257/1-1198 LINGETDESS VPELYGYEVL ISSTGKDGKY KSVYVGEETN ITLNDLKPAM ENSBTAP00000032499/1-1198 LINGETDETT VPELFGYEIL VSSTGKDGKY KSVFAGEETS VTLNDLKPAT BACU012203/1-1198 LINGETDETT VPELYGYEIL VSSTGKDGKY KSVYAGEETS VTLNDLKPAT 351 400 ENSTTRP00000003793/1-1198 DYHAKVQAEY NSIKGTPSEA ETFTTLSCEP DIPNPPRIAN RTKNSLTLQW bmy_16076T0/1-1144 DYHAKVQAEY NSIKGTPSEA ETFTTLSCEP DIPNPPRIAN RTKNSLTLQW ENSP00000417257/1-1198 DYHAKVQAEY NSIKGTPSEA EIFTTLSCEP DIPNPPRIAN RTKNSLTLQW ENSBTAP00000032499/1-1198 DYHAKVQAEY NSVKGTPSAA ETFTTLSCEP DIPNPPRIAN RTKNSLTLQW BACU012203/1-1198 DYHAKVQAEY NSIKGTPSEA ETFTTLSCEP DIPNPPRIAN RTKNSLTLQW 401 450 ENSTTRP00000003793/1-1198 KAPSDNGSKI QSFILEWDEG KGNGEFCQCY TGLQKQFKIT KLSPAMGCKF bmy_16076T0/1-1144 KAPSDNGSKI QNFILEWDEG KGNGEFCQCY TGLQKQFKIT KLSPAMGCKF ENSP00000417257/1-1198 KAPSDNGSKI QNFVLEWDEG KGNGEFCQCY MGSQKQFKIT KLSPAMGCKF ENSBTAP00000032499/1-1198 KAPSDNGSKI QSFILEWDEG KGNGEFCQCY MGLQKQFKIT KLSPAMGCKF BACU012203/1-1198 KAPSDNGSKI QSFILEWDEG KGNGEFCQCY TGLQKQFKIT KLSPAMGCKF 451 500 ENSTTRP00000003793/1-1198 RLSAKNDYGP SGFSEEVLYY TSGCAPSMPA SPILIKAGVT WLSLQWSKPS bmy_16076T0/1-1144 RLSAKNDYGP SGFSEEVLFY TSGCAPSMPA SPILIKAGVT WLSLQWSKPS ENSP00000417257/1-1198 RLSARNDYGT SGFSEEVLYY TSGCAPSMPA SPVLTKAGIT WLSLQWSKPS ENSBTAP00000032499/1-1198 RLSAKNDYGT SGFSEEVLYY TSGCAPSMPA SPVLTKAGVT WLSLQWSKPS BACU012203/1-1198 RLSAKNDYGP SGFSEEVLYY TSGCAPSMPA SPILIKAGVT WLSLQWSKPS 501 550 ENSTTRP00000003793/1-1198 GTPSDEGISY ILEMEEETSG YGFKPKYDGE DLAYTVKNLR RSTKYKFKVI bmy_16076T0/1-1144 GTPSDEGISY ILEMEEETSG YGFKPKYDGE DLAYTVKNLR RSTKYKFKVI ENSP00000417257/1-1198 GTPSDEGISY ILEMEEETSG YGFKPKYDGE DLAYTVKNLR RSTKYKFKVI ENSBTAP00000032499/1-1198 GTPSDEGISY ILEMEEETSG YGFKPKYDGE DLAYTVKNLR RSTKYKFKVI BACU012203/1-1198 GTPSDEGISY ILEMEEETSG YGFKPKYDGE DFAYTVKNLR RSTKYKFKVI 551 600 ENSTTRP00000003793/1-1198 AYNSEGKSNP SEVVEFTTCP DKPGVPVKPS VKGKIHSHSF KITWDPPKDS bmy_16076T0/1-1144 AYNSEGKSNP SEVVEFTTCP DKPGVPVKPS VKGKIHSHSF KITWE----- ENSP00000417257/1-1198 AYNSEGKSNP SEVVEFTTCP DKPGIPVKPS VKGKIHSHSF KITWDPPKDN ENSBTAP00000032499/1-1198 AYNSEGKSSP SEVVEFTTCP DKPGVPVKPS VKGKIHSHSF KITWDPPKDN BACU012203/1-1198 AYNSEGKSNP SEVVEFTTCP DKPGVPVKPS VKGKIHSHSF KITWDPPKDS 601 650 ENSTTRP00000003793/1-1198 GGAAINKYVV EMAEGSNXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16076T0/1-1144 ---------- ---------- ---------- ---------- -LYSFSV--- ENSP00000417257/1-1198 GGATINKYVV EMAEGSNGNK WEMIYSGATR EHLCDRLNPG CFYRLRVYCI ENSBTAP00000032499/1-1198 GGAAINKYVV EMAEGSNGSK WDMIYSGATR EHLCDRLNPG CFYRFRVYCI BACU012203/1-1198 GGAAINKYVV EMAEGSNGNK WDMIYSGATR EHLCDRLNPG CFYRFRVYCI 651 700 ENSTTRP00000003793/1-1198 XXXXXXXVSE SLLVQTPAVP PGPCLPPRLQ GRPKAKEIQL RWGPPLVNGG bmy_16076T0/1-1144 ----DSQVSE SLLVQTPAVP PGPCLPPRLQ GRPKAKEIQL RWGPPLVSGG ENSP00000417257/1-1198 SDGGQSAVSE SLLVQTPAVP PGPCLPPRLQ GRPKAKEIQL RWGPPLVDGG ENSBTAP00000032499/1-1198 SDGGQSAVSE SLLVQTPAVP PGPCLPPRLQ GRPKAKEIQL RWGPPQVNGG BACU012203/1-1198 SDGGQSAVSE SLLVQTPAVP PGPCLPPRLQ GRPKAKEIQL RWGPPLVSGG 701 750 ENSTTRP00000003793/1-1198 SPISCYGVEM SPVERDEPRE VYQGSEVECT VSSLLPGKTY SFRLRAANKM bmy_16076T0/1-1144 SPISCYGVEM SPLERDEPRE VYQGSEVECT VSSLLPGKTY SFRLRAANKM ENSP00000417257/1-1198 SPISCYSVEM SPIEKDEPRE VYQGSEVECT VSSLLPGKTY SFRLRAANKM ENSBTAP00000032499/1-1198 SPISCYGVEM SPVERDEPRE VYQGPEVECT VSNLLPGKTY SFRLRAANKM BACU012203/1-1198 SPISCYGVEM SPVERDEPRE VYQGSEVECT VSSLLPGKTY SFRLRAANKM 751 800 ENSTTRP00000003793/1-1198 GFGPFSEKCD ITTAPGPPDQ CKPPQVTWRS ATCAQVNWEV PLSNGTDVTE bmy_16076T0/1-1144 GFGPFSEKCD ITTAPGPPDQ CKPPQVTWRS ATCAQVNWEV PLSNGTDVTE ENSP00000417257/1-1198 GFGPFSEKCD ITTAPGPPDQ CKPPQVTCRS ATCAQVNWEV PLSNGTDVTE ENSBTAP00000032499/1-1198 GFGPFSEKHD ITTAPGPPDQ CKPPQVTCRS ATCAQVNWEV PLSNGTDVTE BACU012203/1-1198 GFGPFSEKCD ITTAPGPPDQ CKPPQVTWRS ATCAQVNWEV PLSNGTDVTE 801 850 ENSTTRP00000003793/1-1198 YRLEWGGVEG SMQICYCGPG LSYELKGLSP ATTYYCRVQA LSIVGAGPFS bmy_16076T0/1-1144 YRLEWGGVEG SMQICYCGPG LSYELKGLSP ATTYYCRVQA LSIVGAGPFS ENSP00000417257/1-1198 YRLEWGGVEG SMQICYCGPG LSYEIKGLSP ATTYYCRVQA LSVVGAGPFS ENSBTAP00000032499/1-1198 YRLEWGGVEG SMQICYCGPG LSYELKGLSP ATTYYCRVQA LSIVGAGPFS BACU012203/1-1198 YRLEWGGVEG SMQICYCGPG LSYELKGLSP ATTYYCRVQA LSIVGAGPFS 851 900 ENSTTRP00000003793/1-1198 EVVACVTPPS VPGIVTCLQE VSDDDIENPN YSPSTCLAVS WEKPCDHGSE bmy_16076T0/1-1144 EIVACVTPPS VPGIVTCLQE VSDDDIENPN YSPSTCLAVS WEKPCDHGSE ENSP00000417257/1-1198 EVVACVTPPS VPGIVTCLQE ISDDEIENPH YSPSTCLAIS WEKPCDHGSE ENSBTAP00000032499/1-1198 EVVACMTPPS VPAIVTCLQE ISDDDIENPN YSPSTCLAIS WEKPCDHGSE BACU012203/1-1198 EVVACVTPPS VPGIVTCLQE VSDDDIENPS YSPSTCLAVS WEKPCDHGSE 901 950 ENSTTRP00000003793/1-1198 ILAYSIDFGD KQPLTVGKVT SYILDNLQPD TTYRIRIQAL NSLGAGPFSH bmy_16076T0/1-1144 ILAYSIDFGD KQPLTVGKVT SYILDSLQPD TTYRIRIQAL NSLGAGPFSH ENSP00000417257/1-1198 ILAYSIDFGD KQSLTVGKVT SYIINNLQPD TTYRIRIQAL NSLGAGPFSH ENSBTAP00000032499/1-1198 ILAYSIDFGD KQPLTVGKVT NYILDNLQPD TTYRIRIQAL NSLGAGPFSH BACU012203/1-1198 ILAYSIDFGD KQPLTVGKVT SYILDSLQPD TTYRIRIQAL NSLGAGPFSH 951 1000 ENSTTRP00000003793/1-1198 MIKLKTKPLP PDPPRLECVA FSHQNLKLKW GEGTPKTLST DSVQYHLQME bmy_16076T0/1-1144 MIKLKTKPLP PDPPRLECVA FSHQNLKLKW GEGTPKTLST DSVQYHLQME ENSP00000417257/1-1198 MIKLKTKPLP PDPPRLECVA FSHQNLKLKW GEGTPKTLST DSIQYHLQME ENSBTAP00000032499/1-1198 MIKLKTKPFP PDPPRLECVA FSHQNLKLKW GEGTPKTLST DSVQYHLQME BACU012203/1-1198 MIKLKTKPLP PDPPRLECVA FSHQNLKLKW GEGTPKTLST DSVQYHLQME 1001 1050 ENSTTRP00000003793/1-1198 DKNGRFISLY RGPCHTYKVQ RLNESTSYKF CIQACNEAGE GPLSQEYIFT bmy_16076T0/1-1144 DKNGRFISLY RGPCHTYKVQ RLNESTSYKF CIQACNEAGE GPLSQEYIFT ENSP00000417257/1-1198 DKNGRFVSLY RGPCHTYKVQ RLNESTSYKF CIQACNEAGE GPLSQEYIFT ENSBTAP00000032499/1-1198 DKNGRFVSLY RGPCHTYKVQ RLNESTSYKF CIQACNEAGE GPLSQEYIFT BACU012203/1-1198 DKNGRFISLY RGPCHTYKVQ RLNESTSYKF CIQACNEAGE GPLSQEYIFT 1051 1100 ENSTTRP00000003793/1-1198 TPKSVPAALK APKIEKVNDH VCEITWECLQ PMKGDPVIYS LQVMVGKDSE bmy_16076T0/1-1144 TPKSVPAALK APKIEKVNDH ICEITWECLQ PMKGDPVIYS LQVMVGKDSE ENSP00000417257/1-1198 TPKSVPAALK APKIEKVNDH ICEITWECLQ PMKGDPVIYS LQVMLGKDSE ENSBTAP00000032499/1-1198 TPKSVPAALK APKIEKVNDH ICDITWECLQ PMKGDPVIYS LQVMVGKDSE BACU012203/1-1198 TPKSVPAALK APKTERVNDH VCEVTWECLQ PMKGDPVIYS LQVMVGKDSE 1101 1150 ENSTTRP00000003793/1-1198 FKQIYKGPDS SFRYSSLQLN CEYRFRVCAI RQCQDPVGHQ DLVGPYSTTV bmy_16076T0/1-1144 FKQIYKGPDS SFRYSSLQLN CEYRFRVCAI RQCQDPVGHQ DLVGPYSTTV ENSP00000417257/1-1198 FKQIYKGPDS SFRYSSLQLN CEYRFRVCAI RQCQDSLGHQ DLVGPYSTTV ENSBTAP00000032499/1-1198 FKQIYRGPDS AFRYSSLQLN CEYRFRVCAI RQCQDPAGHQ DLVGPYSTTV BACU012203/1-1198 FKQIYKGPDS SFRYSSLQLN CEYRFRVCAI RQCQDPVGHQ DLVGPYSTTV 1151 1200 ENSTTRP00000003793/1-1198 LFISQRTEPP ASTNRDTVES TRTRRALSDE QCAAVILVLF AFFSILIAFI bmy_16076T0/1-1144 LFISQRTEPP ASTNRDTVES TRTRRALSDE QCAAVILVLF AFFSILIAFI ENSP00000417257/1-1198 LFISQRTEPP ASTNRDTVES TRTRRALSDE QCAAVILVLF AFFSILIAFI ENSBTAP00000032499/1-1198 LFISQRTEPP ASASRDTVES TSPGRALSDE QCAAVILVLF AFFSILIAFI BACU012203/1-1198 LLISQRTEPP ASTNRDAVES TRTRRALSDE QCAAVILVLF AFFSILIAFI 1201 1250 ENSTTRP00000003793/1-1198 IQYFVIK bmy_16076T0/1-1144 IQYFVIK ENSP00000417257/1-1198 IQYFVIK ENSBTAP00000032499/1-1198 IQYFVIK BACU012203/1-1198 IQYFVIK