KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:08 2014 Check: 00 .. Name: ENSTTRP00000003601/1-750 Len: 894 Check: 420 Weight: 1.00 Name: ENSP00000340474/1-876 Len: 894 Check: 8696 Weight: 1.00 Name: ENSBTAP00000032554/1-724 Len: 894 Check: 6706 Weight: 1.00 Name: bmy_13887T0/1-534 Len: 894 Check: 132 Weight: 1.00 Name: BACU009816/1-850 Len: 894 Check: 8950 Weight: 1.00 // 1 50 ENSTTRP00000003601/1-750 MDAGDPAGDP AGGECVPMG- ---------- ----RDPLLF LQTLQTLWST ENSP00000340474/1-876 MDPGDPAGDP AAGERHRMG- ---------- ----RDPLLL LQALQTLWST ENSBTAP00000032554/1-724 MDPGDPEEKP AAGD--PAGG ---------- --GRQDPRLF PQTLQTLWST bmy_13887T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU009816/1-850 MQAPAPPGAR CPGVCCLFGG LGGGWMVLDT AVCRRDPLLF LQTLQTLWST 51 100 ENSTTRP00000003601/1-750 RELGQLREEA QRGFAALEDP LAALLDMLDS SRGWRGKGPS LEAWVTRDLK ENSP00000340474/1-876 RERKQLREEA WRGFAALDDP LAGLLDMLES CRGQRGEGPS LAAWISHQLQ ENSBTAP00000032554/1-724 RELRQLREEA WKWFAALDNP LTTLLDMLDA SRGCGGRDPS LEAWVARELE bmy_13887T0/1-534 ------MQVE WR------PP V--------G RVGVSGEE-- ------EDRQ BACU009816/1-850 RELGQLREEA QRGFAALEDP LAALLDMLDG SRGWRGKGPS LEAWVARELK 101 150 ENSTTRP00000003601/1-750 RCLQAQLCPG P--ARGSPGL KQLQARAVKL LAESPPGLIE PLVSIFQLQD ENSP00000340474/1-876 CWLQAQPCPS L--AQHSLRL KQLQARAVKV LTESPPSLAA PLASIFQLQD ENSBTAP00000032554/1-724 RWLQAQPHPG P--AQGGRAL KPLQARAVRL LTEGPPSLVE PLVSIFQLQD bmy_13887T0/1-534 SRMSPHPCPI PYSLRPSP-- ---------- -AQSPPSL-- ---------- BACU009816/1-850 RCLQAQPCPG P--ARGSPGL KQLQARAVKL LAESPPGLVE PLVSIFQLQD 151 200 ENSTTRP00000003601/1-750 ADRSPLLAQV HRLHQEGKFK EAIVLGAKLR LQADLDVEKX XXXXXXXXXX ENSP00000340474/1-876 ADRSCLLAHV HRLHHEGRFR EAATLGATLK LQSELGVEKM SIPLLLQDKV ENSBTAP00000032554/1-724 ADRSPVLAHI HRLHQEGKFK EAIVLGTKLQ LQADLDVEKM CVPLLLQDKV bmy_13887T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU009816/1-850 TDRSPLLAHV HRLHQEGKFK EAIVLGTKLR LQADLDVEKM CIPLLLQDKA 201 250 ENSTTRP00000003601/1-750 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340474/1-876 ALVERYVAGF PDLQRRLLVL MDSWCQPGFD IKDVARRYPE VTSLSLEKLS ENSBTAP00000032554/1-724 GLAEHYVDSL PHLQQRLLAL MDSWCQPGFD IRVVARQYPQ ATL-RLERLS bmy_13887T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU009816/1-850 DLVERYVDGF PDLQRRLLAL MDSWCQPGFD IRVVARRYPQ TTS-RLERLS 251 300 ENSTTRP00000003601/1-750 XXXXXXXXXX XXXXXXXXXX LCPNVITQQR LAALRYLCYK RLVERSVSRE ENSP00000340474/1-876 PKALSRQVLR LQERYGVAPA LCPNAAIQQR LAALRHLCHK RFVEKSLSQE ENSBTAP00000032554/1-724 PRALGRHVLR LLEQYSLDPA LCPNAVTQQR LAALRYLCYK RLVERSMSQE bmy_13887T0/1-534 ---------- --------SA LCPNVVTQQR LAALRYLCYK RLVERSVSRE BACU009816/1-850 PRALARQVLR LLERHGLDPA LCPNVVTQQR LAALRYLCYK RLVERSVPRE 301 350 ENSTTRP00000003601/1-750 SWAEHVQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340474/1-876 NWTDHVQGLV GQSPWLQEQL SQLLVSHSDP VTAAQCAMEL LLPEERLPAA ENSBTAP00000032554/1-724 SWAELVQGLV GQDECLQEQL LQLLASLEDV AMVAQCALDL SLPVERLPAT bmy_13887T0/1-534 SWAEHVQGLV GQDQGLQEQL LQLLASHDDA ALVAQCALDL LLPEERLPAS BACU009816/1-850 SWAEHVQGLV GQDQGLQEQL LQLLASHDDA ALVAQCALDL LLPEERLPAS 351 400 ENSTTRP00000003601/1-750 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340474/1-876 VAVELRRFRL QGRATEADSR LEVKDMKDRY YQLPIPRENV HLLASWEDLT ENSBTAP00000032554/1-724 VVAEMSQLRL QERTAKA--- -PSEDRRDDC YQLPISRDDI YFLASWEELA bmy_13887T0/1-534 VAAELRQLRI QERTAEA--- -PLEDGKDDY YQLPISREHL HFLASWEDLA BACU009816/1-850 VAAELRQLRI QERTAEA--- -PLENGKDDY YQLPISREHL HFLASWEDLA 401 450 ENSTTRP00000003601/1-750 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340474/1-876 RHEGALLQCH QVVGVDVEWT PVFVAGGRPR PSLLQVAVEG HVFLLDVLAL ENSBTAP00000032554/1-724 RHEDTLLQPG QVVGVDLEWR PSFGTGGRPR VSLMQVAVEG RVFLLDLPRL bmy_13887T0/1-534 RHQEELLQPG RVVGMDLEWR PSFGAGGRPR ASLMQVAVEG RVFLLDLPRL BACU009816/1-850 RHQEELLQPG RVVGVDLEWR PSFGAGGRPR ASLMQVAVEG RVFLLDLPRL 451 500 ENSTTRP00000003601/1-750 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXRSLG ASCPSLAQAE ENSP00000340474/1-876 SQPPTGQGAQ AFSRLVAQLL SDPSITKLGY GMVGDLQKLG TSCPALAHVE ENSBTAP00000032554/1-724 SSPAGGQGPR AFSQLVSQLL SDPSITKLGY GMAGDLRSLG TSYPALAQAG bmy_13887T0/1-534 SSPAGGQAPQ AFSRLVSRLL ADPSITKLGY GMAGDLRSLG ASCPALAQAE BACU009816/1-850 SSPAGGQASQ AFSRLVSRLL ADPSITKLGY GMAGDLRSLG ASCPALAQAE 501 550 ENSTTRP00000003601/1-750 KQLRGSVDLL QVHRQMRAAD RPAPGVDGAA GPRGLSLLVQ QVLGKPLDKV ENSP00000340474/1-876 KQILGGMDLL LVHRQMRVAS VPAPAVDRAR ELRGLSLLVQ QVLGTALDKT ENSBTAP00000032554/1-724 QKLQGGLDLL QVHRQMRVAD RPAPAVDGAA GPRGLSLLVQ QVLGKPLDKT bmy_13887T0/1-534 KQLQGSVDLL QVHRQMRVAD RPAPGVEGAA GPRGLSLLVQ QVLGKPLDKM BACU009816/1-850 KQLQGSVDLL QVHRQ----- ---------- ---------- -----PLDKM 551 600 ENSTTRP00000003601/1-750 QQLSNWDRRP LCEGQLVYAA ADVYCLLEVY WALCREPARF HLSGDLARSL ENSP00000340474/1-876 QQLSNWDRRP LCEEQVIYAA ADAYCLLEVH QALCREPARF HLSEDLAGSR ENSBTAP00000032554/1-724 QQLSNWDRRP LGEGQLVYAA ADAYCLLEVY WALCREPARF HLPGALPWSL bmy_13887T0/1-534 QQLSNWDRRP LGEGQLVYAA ADAYCLLEVY WALCREPARF HLSGDLARSL BACU009816/1-850 QQLSNWDRRP LGEGQLVYAA ADAYCLLEVY WALCREPARF HLSGDLARSL 601 650 ENSTTRP00000003601/1-750 R--RGERAGP GELPPLQKAS TS--PQQVPA G----EDAAP EVPARAF-RV ENSP00000340474/1-876 RPRHRERPGA RKPPGLQKAS APAAPRQVPV AVAVSEGAAP QIPARAF-RV ENSBTAP00000032554/1-724 RLGRSERHGT WE-PPLQQAS ASPWPRPLPA KLRPRPGSAP PGPAPGPGSL bmy_13887T0/1-534 RLARGERAGA GELPPLQKAS AS--PQQVPA G----EDAAP EVPARAF-RV BACU009816/1-850 RLGRGERAGA GELPPLQKAS AS--PQQVPA G----EDVAP EVPARAF-RV 651 700 ENSTTRP00000003601/1-750 VCDSMLQGLA RRLRCLGIDV LVLATGEDHR RAAEVARQEG RVILTSGLPY ENSP00000340474/1-876 VCDNMLQGLA RSLRCLGVDA RMLGNGEDHR RAAEVARQEG RIILTSGQPF ENSBTAP00000032554/1-724 PCARSSQGLS SRLPCRGGDA KSIVARDAHA QAIGVARQEG RVILTSGLPY bmy_13887T0/1-534 VCDSMLQGLA RSLRCLGIDV LVLATGEDHR RAAEVARQEG RIILTSGLPY BACU009816/1-850 VCDSMLQGLA WRLRCLGIDV LVLATGEDHR RAAEVARREG RIILTSGLPY 701 750 ENSTTRP00000003601/1-750 HKLRAQVGAG RCLSVDCSLK ARQQATAVIR HFNVRVTHSD IFSRCQACNC ENSP00000340474/1-876 HKLRAQVGAG RCLSVDCSLK AQQQAKAVLK HFNVRVTHAD IFSRCQACNC ENSBTAP00000032554/1-724 HKLRAQVGAG RCLAVDCSLK AQQQAKAILR HFNVRVTPAD IFSRCQ---- bmy_13887T0/1-534 HKLRAQVGAG RCLSVDCSLK ARQQAMAVIR HFNVRVTHSD IFSRCQV--- BACU009816/1-850 HKLRAQVGAG RCLSVDCSLK ARQQATAVIR HFNVRVTHSD IFSRCQACNC 751 800 ENSTTRP00000003601/1-750 HQYLKVSKDV MKQLVWLSGH PEGPSG---- ---------- ---------- ENSP00000340474/1-876 DQYLKVSRDM MKQLMWLSSH QEGPRSSGDE ATQSQAVQEP GPAPDAAPEG ENSBTAP00000032554/1-724 ---------- ---------- ---------- ---------- ---------- bmy_13887T0/1-534 ---------- ---------- ---------- ---------G AACPLPAPGQ BACU009816/1-850 HQYLKVSKDV MKQLVWLSGH PEGPSGTGDE AAQIEDEGET GSAPEEAPGG 801 850 ENSTTRP00000003601/1-750 ---------- ---------- ---------- ---------- ---------- ENSP00000340474/1-876 CTYDRPCRWL QMADLRAETP DMLADGTRLQ LAGVPVGVLR TPGLRCFYCC ENSBTAP00000032554/1-724 ---------- ---------- ---------- ---------- ---------- bmy_13887T0/1-534 C--------- ---------- ---------- ---------- ---------- BACU009816/1-850 CAYDPSCRWL EEEDLQSRVP ATLGNGTRLQ LSGVPAGVLR RPGLRHFYCC 851 900 ENSTTRP00000003601/1-750 ---------- ---------- ---------- ---------- ---- ENSP00000340474/1-876 TGCGKVFWDG SHLGRVATHF RDMLESAPSP CEPSPAPSPA SSPF ENSBTAP00000032554/1-724 ---------- ---------- ---------- ---------- ---- bmy_13887T0/1-534 ---------- ---------- -----GSPGS DR-------- ---- BACU009816/1-850 TGCGKVFWEG SHLGRVAENF REVLEGVPGS REPSRAPSPA GSPS