KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:08 2014 Check: 00 .. Name: ENSTTRP00000014364/1-281 Len: 659 Check: 2961 Weight: 1.00 Name: BACU016211/1-623 Len: 659 Check: 4092 Weight: 1.00 Name: bmy_16870T0/1-429 Len: 659 Check: 4193 Weight: 1.00 Name: ENSP00000253008/1-367 Len: 659 Check: 9311 Weight: 1.00 Name: ENSBTAP00000032579/1-363 Len: 659 Check: 1937 Weight: 1.00 // 1 50 ENSTTRP00000014364/1-281 ---------- ---------- ---------- ----MMGSVL PAEALVLKTG BACU016211/1-623 ---------- ---------- ---------- ----MMGSVL PAEALVLSTG bmy_16870T0/1-429 PLLSPLCSPL AHHIPASARP AVRPSPAPAS PGPPMMGSVL PAEALVLKTG ENSP00000253008/1-367 ---------- ---------- ---------- ----MMGSVL PAEALVLKTG ENSBTAP00000032579/1-363 ---------- ---------- ---------- ----MMGSVL PAEALVLKTG 51 100 ENSTTRP00000014364/1-281 LKAPGLALAE VITSDILHSF LYGRWRNVLG EQLFEDKSHH ASPKTAFTAE BACU016211/1-623 LKAPGLALAE VITSDILHSF LYGRWRNVLG EQLFEDKSHH ASPKTAFTAE bmy_16870T0/1-429 LKAPGLALAE VITSDILHSF LYGRWRNVLG EQLFEDKSHH ASPKTAFTAE ENSP00000253008/1-367 LKAPGLALAE VITSDILHSF LYGRWRNVLG EQLFEDKSHH ASPKTAFTAE ENSBTAP00000032579/1-363 LKAPGLALAE VITSDILHSF LYGRWRNVLG EQLFEDKSHH ASPKTAFTAE 101 150 ENSTTRP00000014364/1-281 VLAQSFSG-- EVQKLSSLVL PAEVIIAQSS IPGEGLGIFS KTWIKAGTEM BACU016211/1-623 VLAQSFSG-- EVQKLSSLVL PAEVIIAQSS IPGEGLGIFS KTWIKAGTEM bmy_16870T0/1-429 VLAQSFSG-- EVQKLSSLVL PAEVIIAQSS IPGEGLGIFS KTWIKAGTEM ENSP00000253008/1-367 VLAQSFSG-- EVQKLSSLVL PAEVIIAQSS IPGEGLGIFS KTWIKAGTEM ENSBTAP00000032579/1-363 VLAQSFSGAT EVQKLSSLVL PAEVIIAQSS IPGEGLGIFS KTWIKAGTEM 151 200 ENSTTRP00000014364/1-281 GPFTGRVIAP EHVDICKNNN LMWEVFNEDG TVRYFIDASQ EDHRSWMTYI BACU016211/1-623 GPFTGRVIAP EHVDICKNNN LMWEVFNEDG TVRYFIDASQ EDHRSWMTYI bmy_16870T0/1-429 GPFTGRVIAP EHVDICKNNN LMWEVFNEDG TVRYFIDASQ EDHRSWMTYI ENSP00000253008/1-367 GPFTGRVIAP EHVDICKNNN LMWEVFNEDG TVRYFIDASQ EDHRSWMTYI ENSBTAP00000032579/1-363 GPFTGRVIAP EHVDICKNNN LMWEVFNEDG TVRYFIDASQ EDHRSWMTYI 201 250 ENSTTRP00000014364/1-281 KCARNEQEQN LEVVQIGTSI FYKAAE---- ---------- ---------- BACU016211/1-623 KCARNEQEQN LEVVQIGTSI FYKAIEVQGD LGRLLSCDLN PDLCDPTVEP bmy_16870T0/1-429 KCARNEQEQN LEVVQIGTSI FYKAIE---- ---------- ---------- ENSP00000253008/1-367 KCARNEQEQN LEVVQIGTSI FYKAIE---- ---------- ---------- ENSBTAP00000032579/1-363 KCARNEQEQN LEVVQIGTSI FYKAIE---- ---------- ---------- 251 300 ENSTTRP00000014364/1-281 ---------- ---------- ---------- ---------- ---------- BACU016211/1-623 LVTMPWELPG QYLFAGTLLI GSSRPGCAAL RLFLARTRGR KVWRADRGSA bmy_16870T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSP00000253008/1-367 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032579/1-363 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000014364/1-281 ---------- ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXXX BACU016211/1-623 GQNQREGAGA FSVTVEAKEK GPILMIPPDQ ELLVWYGNSH NTFLGIPGVP bmy_16870T0/1-429 ---------- ---------- ----MIPPDQ ELLVWYGNSH NTFLGIPGVP ENSP00000253008/1-367 ---------- ---------- ----MIPPDQ ELLVWYGNSH NTFLGIPGVP ENSBTAP00000032579/1-363 ---------- ---------- ----MIPPDQ ELLVWYGNSH NTFLGIPGVP 351 400 ENSTTRP00000014364/1-281 XXXXXXXXXX XXDFHPADPA AGTSGRMRCV ICHRGFNSRS NLRSHMRIHT BACU016211/1-623 GLEEEQKKNK HEDFHPADPA AGTSGRMRCV ICHRGFNSRS NLRSHMRIHT bmy_16870T0/1-429 GLEEEQKKNK HEDFHPADPA AGTSGRMRCV ICHRGFNSRS NLRSHMRIHT ENSP00000253008/1-367 GLEEDQKKNK HEDFHPADSA AGPAGRMRCV ICHRGFNSRS NLRSHMRIHT ENSBTAP00000032579/1-363 GLEEEQKKNK HEDFHPADSA TGTAGRMRCV ICHRGFNSRS NLRSHMRIHT 401 450 ENSTTRP00000014364/1-281 LDKPFVCRFC NRRSQ----- ---------- ---------- ---------- BACU016211/1-623 LDKPFVCRFC NRRFSQSSTL RNHVRLHTGE RPYKCQVIDV KMAMEMRLPV bmy_16870T0/1-429 LDKPFVCRFC NRRFSQSSTL RNHVRLHTGE RPYKCQVCQS AYSQLAGLPS ENSP00000253008/1-367 LDKPFVCRFC NRRFSQSSTL RNHVRLHTGE RPYKCQVCQS AYSQLAGLRA ENSBTAP00000032579/1-363 LDKPFVCRFC NRRFSQSSTL RNHVRLHTGE RPYKCQVCQS AYSQLAGLRA 451 500 ENSTTRP00000014364/1-281 ---------- ---------- ---------- ---------- ---------- BACU016211/1-623 ARKPLSESLG RETKKHLVVP GDTITTDTGF MRGHGTYMGE EKLIASVAGS bmy_16870T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSP00000253008/1-367 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032579/1-363 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000014364/1-281 ---------- ---------- ---------- ---------- ---------- BACU016211/1-623 VERVNKLVCV KALKTRYHGE VGDIVVGRIT ELGQGVLVQV SPSLVKRQKT bmy_16870T0/1-429 ---------- -------EWI DAIVCMKRKY GKGKGNMEKE KEKCLEVGEA ENSP00000253008/1-367 ---------- -------H-- ---------- ---------- -------QKS ENSBTAP00000032579/1-363 ---------- -------H-- ---------- ---------- -------QKS 551 600 ENSTTRP00000014364/1-281 ---------- ---------- ---------- ---------- ---------- BACU016211/1-623 HFHDLPCGAS VILGNNGFIW IYPTPEHKEE DAGGFIANLE PVSLADREVI bmy_16870T0/1-429 AGRVVP--LT GFESHPCHSW VSAPRAMTTV Q------K-- ---------- ENSP00000253008/1-367 ARHRPP--ST ALQAHS--PA LPAPHAHAPA LAAAAAAA-- ---------- ENSBTAP00000032579/1-363 ARHRPP--SA ALQAHS--PA LPAPHAHAPA L------A-- ---------- 601 650 ENSTTRP00000014364/1-281 ---------- ---------- ---------- ---------- ---------- BACU016211/1-623 SRLRNCIISL ATQRMLLYDT SILYCYEASL PHQIKDILKP EIMEEIVMET bmy_16870T0/1-429 ---------- ---------- ------NQKS PKGLGRFLVV SS-------- ENSP00000253008/1-367 ---------- ---------- ------AAAA AHHLPAMVL- ---------- ENSBTAP00000032579/1-363 ---------- ---------- ------AAAA AHHLPAMVL- ---------- 651 700 ENSTTRP00000014364/1-281 --------- BACU016211/1-623 RQRLLEQEG bmy_16870T0/1-429 --------- ENSP00000253008/1-367 --------- ENSBTAP00000032579/1-363 ---------