KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:09 2014 Check: 00 .. Name: ENSTTRP00000013690/1-926 Len: 1095 Check: 9115 Weight: 1.00 Name: BACU016183/1-894 Len: 1095 Check: 5398 Weight: 1.00 Name: ENSP00000361120/1-914 Len: 1095 Check: 2359 Weight: 1.00 Name: bmy_05383T0/1-749 Len: 1095 Check: 5615 Weight: 1.00 Name: ENSBTAP00000032582/1-802 Len: 1095 Check: 4169 Weight: 1.00 // 1 50 ENSTTRP00000013690/1-926 ----GSSGRA RCRQWESRWR RRWRWRSPG- --PGGDGRPL HEPR------ BACU016183/1-894 MARDLGAGSA RSGAWR---- -----RAPAG VHAGGPAAER AGGR------ ENSP00000361120/1-914 ---------M VQRMWA---- -----EAAG- -PAGGAEPLF PGSR------ bmy_05383T0/1-749 MARDPGAGSA QSGAWR---- -----RAPAG FHAGGPAAER VGGRGLLKLS ENSBTAP00000032582/1-802 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013690/1-926 ---------- --IRAPPCDA RGPRPAAFAS PG-PRPGAG- ---------- BACU016183/1-894 ---------- --AGCPPGSE EGKEAALGLW VILASPGLGI WALN------ ENSP00000361120/1-914 RSRSVWDAVR LEVGVPDSCP VVLHSFTQLD PDLPRP---- ---------- bmy_05383T0/1-749 ATPSVWDAVR LEVGGPDSCP VVLHSFTQLD PDLPRLEVGS RKWHGVSPCR ENSBTAP00000032582/1-802 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013690/1-926 -----DVLPG LRMMVDFQSS TQEIGEELVN GVIYSISLRK VQVHHGANKG BACU016183/1-894 ---------- ---ADEGRSS TQEIGEELVN GVIYSISLRK VQVHHGANKG ENSP00000361120/1-914 ---------- -------ESS TQEIGEELIN GVIYSISLRK VQLHHGGNKG bmy_05383T0/1-749 TARQAPTPPP GVRALSLQSS TQEIGEELVN GVIYSISLRK VQVHHGANKG ENSBTAP00000032582/1-802 ---------- ---ALSLQSS TQEIGEELVN GVIYSISLRK IQVHHGASKG 151 200 ENSTTRP00000013690/1-926 QRWLGYENES ALNLYETCRV RTVKAGTLEK LVEHLVPAFR GSNLSYVTIF BACU016183/1-894 QRWLGYENES ALNLYETCKV RTVKAGTLEK LVEHLVPAFQ GSDLSYVTIF ENSP00000361120/1-914 QRWLGYENES ALNLYETCKV RTVKAGTLEK LVEHLVPAFQ GSDLSYVTIF bmy_05383T0/1-749 QRWLG----- ---------- ---------- ---------- ---------- ENSBTAP00000032582/1-802 QRWLGYENES ALNLYETCKV RTVKAGTLEK LVEHLVPAFQ GSDLSYVTIF 201 250 ENSTTRP00000013690/1-926 LCTYRAFTTT QRVLDLLFQR YGRCDALTAS SRYGCILPYS SEDGGPQDQL BACU016183/1-894 LCTYRAFTTT QRVLDLLFQ- ---------- -RYGCILPYF SVDGGPQDQL ENSP00000361120/1-914 LCTYRAFTTT QQVLDLLFKR YGRCDALTAS SRYGCILPYS DEDGGPQDQL bmy_05383T0/1-749 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032582/1-802 LCTYRAFTTT QQVLDLLFK- ---------- -RYGCILPYS SEDGGPQDQL 251 300 ENSTTRP00000013690/1-926 KNAVS----- ----SILGTW LDQYSEDFCQ PPDFPC---- -----LKQLV BACU016183/1-894 KKGACGKEGK TRPLTLLPAL YLQYHLLLPG HLTGPVSGGF LSTLGLKQFM ENSP00000361120/1-914 KNAIS----- ----SILGTW LDQYSEDFCQ PPDFPC---- -----LKQLV bmy_05383T0/1-749 ---------- ---------- ---------- ---------- -------QLV ENSBTAP00000032582/1-802 KNAIS----- ----SILGTW LDQYSEDFCQ PPDFPC---- -----LRQLV 301 350 ENSTTRP00000013690/1-926 AYVQLNMPGS DLERRAHLLL AQLERTELTK AEPEXXXXXX XXXXXXXXXX BACU016183/1-894 AYVQLSMLGS DLEPQAYLLL TQ-------- ---------- ---------- ENSP00000361120/1-914 AYVQLNMPGS DLERRAHLLL AQLEHSEPIE AEPEALSPVP ALKPTPELEL bmy_05383T0/1-749 AYVQLNMPGS DLERRAHLLL AQLEHTELTK AEPEA--LSP ALKPTPALEP ENSBTAP00000032582/1-802 AYVQLNMPGS DLERRAHLLL AQLEHADLSE AEPEA--PVP ALK------- 351 400 ENSTTRP00000013690/1-926 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016183/1-894 ---------- ---------- -----PG--- ---------- ---------- ENSP00000361120/1-914 ALTPARAPSP VPAPAPEPEP APTPAPGSEL EVAPAPAPEL QQAPEPAVGL bmy_05383T0/1-749 VPAPALAPRP VPGPDLEPVP GPDLEPA--- -LAPTPA--- ---------- ENSBTAP00000032582/1-802 ---PAAEPEP TLGPDLEPAP ALAPEPA--- -LMPAPT--- ---------- 401 450 ENSTTRP00000013690/1-926 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016183/1-894 ---------- ----DQEPRR QSR------- ---------- ----AQENGL ENSP00000361120/1-914 ESAPAPALEL EPAPEQDPAP SQTLELEPAP APVPSLQPSW PSPVVAENGL bmy_05383T0/1-749 ---------- -PAPELEPAL SQTLELGPAL AP----EPSW PSPVAAENGL ENSBTAP00000032582/1-802 ---------- -LPSELEPAL SQTLELEPPA AP----DPPW PLPVATENGL 451 500 ENSTTRP00000013690/1-926 XXXXXXXXXX XXXXXXXXXX XXXX------ ---------- ---------- BACU016183/1-894 GEEKPHLLAF PPDLVAEQFT LMDAELFKKV VPYHCLGSIW SQRDKRGKEH ENSP00000361120/1-914 SEEKPHLLVF PPDLVAEQFT LMDA------ ---------- ---------- bmy_05383T0/1-749 GEEKPHLLAF PPDLVAEQFT LMDA------ ---------- ---------- ENSBTAP00000032582/1-802 GEEKPHLLAF PPDLVAEQFT LMDA------ ---------- ---------- 501 550 ENSTTRP00000013690/1-926 ---------- ---------- --------EL FKKVVPYHCL GSIWSQRDKR BACU016183/1-894 LAPTVRATVA QFNSVANCVI TTCLGDRSEL FKKVVPYHCL GSIWSQRDKR ENSP00000361120/1-914 ---------- ---------- --------EL FKKVVPYHCL GSIWSQRDKK bmy_05383T0/1-749 ---------- ---------- --------EL FKKVVPYHCL GSIWSQRDKR ENSBTAP00000032582/1-802 ---------- ---------- --------EL FKKVVPYHCL GSIWSQRDKK 551 600 ENSTTRP00000013690/1-926 GKEHLAPTVR ATVAQFNSVA NCVITTCLGD RSVTARARAR VLEHWIEVAR BACU016183/1-894 GKEHLAPTVR ATVAQFNSVA NCVITTCLGD RSVTARARAR VVEHWIEVAR ENSP00000361120/1-914 GKEHLAPTIR ATVTQFNSVA NCVITTCLGN RSTKAPDRAR VVEHWIEVAR bmy_05383T0/1-749 GKEHLAPTVR ATVAQFNSVA NCVITTCLGD RSVTARARAR VVEHWIEVAR ENSBTAP00000032582/1-802 GKEHLAPTVR ATVAQFNSVA NCVITTCLGD RSVSARHRAR VVEHWIEVAR 601 650 ENSTTRP00000013690/1-926 ECRVLKNFSS LYAILSALQS NSIHRLKKTW EEVSRDSLRI FQKLSEIFSD BACU016183/1-894 ECRVLKNFSS LYAILSALQS NSIHRLKKTW EEVSRDSVRI FQKLSEIFSD ENSP00000361120/1-914 ECRILKNFSS LYAILSALQS NSIHRLKKTW EDVSRDSFRI FQKLSEIFSD bmy_05383T0/1-749 ECRVLKNFSS LYAILSALQS NSIHRLKKTW EEVSRDSVRI FQKLSEIFSD ENSBTAP00000032582/1-802 ECRVLKNFSS LYAILSALQS NSIHRLKKTW EEVSRDSLRV FQKLSEIFSD 651 700 ENSTTRP00000013690/1-926 ENNYSLSREL LIKEGTSKFA TLEM-PKRAQ RPMSXX---- ---------- BACU016183/1-894 ENNYSLSREL LIKEGTSKFA TLEMNPKRAQ RRPKEVTDLL RGLGALRPDQ ENSP00000361120/1-914 ENNYSLSREL LIKEGTSKFA TLEMNPKRAQ KRPKET---- -GI------- bmy_05383T0/1-749 ENNYSLSREL LIKEGTSKFA TLEMNPKRAQ RRPKEV--LS QGV------- ENSBTAP00000032582/1-802 ENNYSLSREL LIKEGTSKFA TLEMNPKRAQ RRPKEA---- -GV------- 701 750 ENSTTRP00000013690/1-926 ---------- ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016183/1-894 LVSGGLVATR AGAWKRWAQA SAEIQGTVPY LGTFLTDLVM LDTAMKDYLY ENSP00000361120/1-914 ---------- ---------- ---IQGTVPY LGTFLTDLVM LDTAMKDYLY bmy_05383T0/1-749 ---------- ---------- ---IQGTVPY LGTFLTDLVM LDTAMKDYLY ENSBTAP00000032582/1-802 ---------- ---------- ---IQGTVPY LGTFLTDLVM LDTAMKDYLY 751 800 ENSTTRP00000013690/1-926 GRLINFEKRR KEFEVIAQIK LLQSACNNYS IAAEEHFGAW FRAMERLSEA BACU016183/1-894 GRLINFEKRR KEFEVIAQIK LLQSACNNYS IAPEEHFGAW FRAMERLSEA ENSP00000361120/1-914 GRLINFEKRR KEFEVIAQIK LLQSACNNYS IAPDEQFGAW FRAVERLSET bmy_05383T0/1-749 ---------- -EFEVIAQIK LLQSACNNYS IAPEEHFGAW FRAMERLSEA ENSBTAP00000032582/1-802 GRLINFEKRR KEFEVIAQIK LLQSACNNYS ITPEEHFGAW FRAMERLSEA 801 850 ENSTTRP00000013690/1-926 DSYSLSCELE PPSESASNTL KVKKNTAIVK RWSDRQAPST ELSTGSSCHS BACU016183/1-894 DS-------- ---------- ---------- ----RQAPST ELSTSSSCHS ENSP00000361120/1-914 ESYNLSCELE PPSESASNTL RTKKNTAIVK RWSDRQAPST ELSTSGSSHS bmy_05383T0/1-749 DS-------- ---------- ---------- ----RQAPST ELSTSSSCHS ENSBTAP00000032582/1-802 ESYTLSCELE PPSESASNTL KVKKNTAIVK RWSDRQAPST ELSTSGSCHS 851 900 ENSTTRP00000013690/1-926 KSCDQLRCGP YLSSGDIADA LSVHSAGSSS SDVEEITMSF VPESPDGQEK BACU016183/1-894 KSCDQLRCGP YLSSGDIADA LSVHSAGSSS SDVEEINMSF VPESPDGQEK ENSP00000361120/1-914 KSCDQLRCGP YLSSGDIADA LSVHSAGSSS SDVEEINISF VPESPDGQEK bmy_05383T0/1-749 KSCDQLRCGP YLSSGDIADA LSVHSAGSSS SDVEEINVSF VPESPDGQEK ENSBTAP00000032582/1-802 KSCDQLRYGP YLSSGDIADA LSVHSAGSSS SDVEEINMSF VPESPDGQEK 901 950 ENSTTRP00000013690/1-926 KFWECTSQSS PETSGISSAS SSTSSSSAST TPVATTRTHK RSVSGVCSYS BACU016183/1-894 KFWESTSQSS PETSGISSAS SSTSSSSAST TPVATTRTHK RSVSGVCSCS ENSP00000361120/1-914 KFWESASQSS PETSGISSAS SSTSSSSAST TPVAATRTHK RSVSGLCNSS bmy_05383T0/1-749 KFWESTSQSS PETSGISSAS SSTSSSSAST TPVATARTHK RSVSGVCSCS ENSBTAP00000032582/1-802 KFWESASQSS PETSGISSAS SSTSSSSAST TPVASTRTHK RSVSGVCSYG 951 1000 ENSTTRP00000013690/1-926 SSLPLYNQQV GDCCIIRVSL DVDNGNMYKS ILVTSQDKAP AVIRKAMDKH BACU016183/1-894 SALPLYNQQV GDCCIIRVSL DVDNGNMYKS ILVTSQDKAP AVIRKAMDKH ENSP00000361120/1-914 SALPLYNQQV GDCCIIRVSL DVDNGNMYKS ILVTSQDKAP AVIRKAMDKH bmy_05383T0/1-749 SALPLYNQQV GDCCIIR--- ---------- --VTSQDKAP AVIRKAMDKH ENSBTAP00000032582/1-802 SSLPLYNQQV GDSCIIRVSL DVDNGNMYKS ILVTSQDKAP AVIRKAMDKH 1001 1050 ENSTTRP00000013690/1-926 NLDEDEPEDY ELVQVISDDR KLKIPDNANV FYAMNSTANY DFVLKKRTFT BACU016183/1-894 NLDADEPEDY ELVQVISDDR KLKIPDNANV FYAMNSTANY DFVLKKRTFT ENSP00000361120/1-914 NLEEEEPEDY ELLQILSDDR KLKIPENANV FYAMNSTANY DFVLKKRTFT bmy_05383T0/1-749 NLDADEPEDY ELVQVISDDR KLKIPDNANV FYAMNSTANY DFVLKKRTFT ENSBTAP00000032582/1-802 NLDEDEPEDY ELVQVISDDR KLKIPDNANV FYAMNSTANY DFVLKKRTFT 1051 1100 ENSTTRP00000013690/1-926 KGAKV----- ------RHGA SSTL----PR MKQKGLKIAK GIF-- BACU016183/1-894 KGAKAAPKIP SSGPTESEGV SPTAHSSPPL AEERDTPFMD HTLNR ENSP00000361120/1-914 KGVKV----- ------KHGA SSTL----PR MKQKGLKIAK GIF-- bmy_05383T0/1-749 KGAKV----- ------RHGA SSTL----PR MKQKGLKIAK GIF-- ENSBTAP00000032582/1-802 KGTKV----- ------RHGA SSTL----PR MKQKGLKIAK GIF--