KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:09 2014 Check: 00 .. Name: ENSBTAP00000032584/1-599 Len: 764 Check: 8438 Weight: 1.00 Name: ENSP00000361151/1-756 Len: 764 Check: 4612 Weight: 1.00 Name: ENSTTRP00000013687/1-614 Len: 764 Check: 5436 Weight: 1.00 Name: bmy_05382T0/1-613 Len: 764 Check: 8111 Weight: 1.00 Name: BACU016184/1-596 Len: 764 Check: 2998 Weight: 1.00 // 1 50 ENSBTAP00000032584/1-599 ---MGRWELA VLGLACCLAV ASAAKLGSVY TEGGFVEGVN KKLSLFGDSI ENSP00000361151/1-756 MLTMGRLQLV VLGLTCCWAV ASAAKLGAVY TEGGFVEGVN KKLGLLGDSV ENSTTRP00000013687/1-614 PYTMGRWEPV VLGLACWLAV ASAAKXXXXX XXXXXXXXXX KKLGLFGNYV bmy_05382T0/1-613 ---MGRWEPV VLGLACWLAV ASAAKLGAVY TEGGFVEGVN KKLGLLGNYV BACU016184/1-596 ---------- -----MCLSL PLG--LGAVY TEGGFVEGVN KKLGLLGDYV 51 100 ENSBTAP00000032584/1-599 DIFKGIPFAA APKALEKPER HPGWQGTLKA KSFKKRCLQA TLTQDSTYGN ENSP00000361151/1-756 DIFKGIPFAA PTKALENPQP HPGWQGTLKA KNFKKRCLQA TITQDSTYGD ENSTTRP00000013687/1-614 DIFKGIPYAA APKPLENPQR HPGWQGTLKA KNFKKRCLQA TITQDSTYGE bmy_05382T0/1-613 DIFKGIPYAA APKPLENPQR HPGWQGTLKA ENFKKRCLQA TITQDSTYGK BACU016184/1-596 DIFKGIPYAA VPKPLENPQR HPGWQGTLKA KNFKKRCLQA TITQDSTYGK 101 150 ENSBTAP00000032584/1-599 EDCLYLNIWV PQGRKEVSHD LPVMIWIYGG AFLMGASQGA NFLSNYLYDG ENSP00000361151/1-756 EDCLYLNIWV PQGRKQVSRD LPVMIWIYGG AFLMGSGHGA NFLNNYLYDG ENSTTRP00000013687/1-614 EDCLYLNIWV PQGRKEVSRN LPVMVWIYGG GFLVGSSQGA NFLSNYLYDG bmy_05382T0/1-613 EDCLYLNIWV PQGKKEVSRN LPVMIWIYGG AFLMGSSHGA NFLSNYLYDG BACU016184/1-596 EDCLYLNIWV PQGRKEVSQN LPVMIWIYGG AFLMGSSHGA NFLSNYLYDG 151 200 ENSBTAP00000032584/1-599 EEIATRGNVI VVTFNYRVGP LGFLSTGDSN LPGNYGLWDQ HMAIAWVKRN ENSP00000361151/1-756 EEIATRGNVI VVTFNYRVGP LGFLSTGDAN LPGNYGLRDQ HMAIAWVKRN ENSTTRP00000013687/1-614 EEIATRGNVI VVSFNYRVGP LGFLSTGDSN LPGNYGLRDQ HMAIAWVKRN bmy_05382T0/1-613 KEIATRGNVI VVTFNYRVGP LGFLSTGDSN LPGNYGLRDQ HMAIAWVKRN BACU016184/1-596 EEIATRGNVI VVSFNYRVGP LGFLSTGDSN LPGNYGLRDQ HMAIAWVKRN 201 250 ENSBTAP00000032584/1-599 IEAFGGDPDN ITLFGESAGG ASVSLQTLSP YNKGLIKRAI SQSGVGLCPW ENSP00000361151/1-756 IAAFGGDPNN ITLFGESAGG ASVSLQTLSP YNKGLIRRAI SQSGVALSPW ENSTTRP00000013687/1-614 IAAFGGDPDN ITIFGESAGG ASVSLQTLSP YSKGLIKRAI SQSGVALCPW bmy_05382T0/1-613 IAAFGGDPDN ITVFGESAGG ASASLQTLSP YNKGLIKRAI SQSGVALCPW BACU016184/1-596 IAAFGGDPDN ITVFGESAGG ASASLQTLSP YNKGLIKRAI SQSGVALCPW 251 300 ENSBTAP00000032584/1-599 AIQQDPLFWA KRIAEKVGCP VDDTSKMAGC LKITDPRALT LAYKLPLGST ENSP00000361151/1-756 VIQKNPLFWA KKVAEKVGCP VGDAARMAQC LKVTDPRALT LAYKVPLAGL ENSTTRP00000013687/1-614 AIQKNPLFWA KKIAEKVGCP LNDTGRMARC LKVTDPRALT LAYKLPLAGM bmy_05382T0/1-613 AIQKNPLFWA KRIAEKVGCP LNDTGRMARC LKVTDPRALT LAYKMPLAGM BACU016184/1-596 AIQKNPLFWA KRIAEKVGCP LNDTGRMARC LKVTDPHALT LAYKMPLAGM 301 350 ENSBTAP00000032584/1-599 EYPKLHYLSF VPVIDGDFIP DDPVNLYANA ADVDYIAGTN DMDGHLFVGM ENSP00000361151/1-756 EYPMLHYVGF VPVIDGDFIP ADPINLYANA ADIDYIAGTN NMDGHIFASI ENSTTRP00000013687/1-614 EYPLVNYLGF LPVVDGDFLP SDPINLYANA ADIDYIAGTN DMDAHIFASV bmy_05382T0/1-613 QYPMVHYLGF LPVIDGDFIP SDPVNLYANA ADIDYIAGTN DMDGHIFASV BACU016184/1-596 KYPLLHYLGF LPVIDGDFIP SDPVNLYANA ADIDYIAGTN DMDGHIFARV 351 400 ENSBTAP00000032584/1-599 DVPAINSNKQ DVTEEDFYKL VSGLTVTKGL RGANATYEVY TEPWAQDSSQ ENSP00000361151/1-756 DMPAINKGNK KVTEEDFYKL VSEFTITKGL RGAKTTFDVY TESWAQDPSQ ENSTTRP00000013687/1-614 EMPAINKDKR AITEEDFYKL VSRFTITKGP RGANATFDFY TKPWARDSSQ bmy_05382T0/1-613 EMPAIDKDKQ AITEEDFYKL VSGLTITKGP RGANATFDIY TKPWAQDSSQ BACU016184/1-596 EMPAISKDKQ AITEEDFYKL VSGLTITKGP RGANATFDVY TKPWAQDSSQ 401 450 ENSBTAP00000032584/1-599 ETRKKTMVDL ETDILFLIPT KIAVAQHKSH ARSANTYTYL FSQPSRMPIY ENSP00000361151/1-756 ENKKKTVVDF ETDVLFLVPT EIALAQHRAN AKSAKTYAYL FSHPSRMPVY ENSTTRP00000013687/1-614 ENKKKTVVHL ETDILFLMPT EIAVAQHKTN AKSAKTYSYL FSQPSRMPTY bmy_05382T0/1-613 ETKKKTVVHF ETDVLFLMPT ESAVTQHKTK AKSAKTYSYL FSHPSRMPFY BACU016184/1-596 ETKKKTVVHF ETDVLFLMPT EIAVAQHKAK AKSAKTYTYL FSHPSRMPFY 451 500 ENSBTAP00000032584/1-599 PKWMGADHAD DLQYVFGKPF ATPLGYRAQD RTVSKAMIAY WTNFARTGDP ENSP00000361151/1-756 PKWVGADHAD DIQYVFGKPF ATPTGYRPQD RTVSKAMIAY WTNFAKTGDP ENSTTRP00000013687/1-614 PRWVGADHAD DLQYVFGKPF ATPLGYRPQD RTVSKAMIAY WTNFARTGDP bmy_05382T0/1-613 PSWVGADHAD DLQYVFGKPF ATPLGYRSQD RTVSKAMIAY WTNFARTGDP BACU016184/1-596 PSWVGADHAD DLQYVFGKPF ATPLGYRSQD RTVSKAMIAY WTNFARTGDP 501 550 ENSBTAP00000032584/1-599 NTGHSTVPAN WDPYTLEDDN YLEINKQMDS NSMKLHLRTN YLQFWTQTYQ ENSP00000361151/1-756 NMGDSAVPTH WEPYTTENSG YLEITKKMGS SSMKRSLRTN FLRYWTLTYL ENSTTRP00000013687/1-614 NMGHSPVPTH WDPYTLESGN YLEINKKMDG SSMKQHLRAD YLQYWTVTYQ bmy_05382T0/1-613 NMGHSAVPTH WYPYTLENGN YLEINKKMDG SSMKQHLRNN YLQYWTVTYQ BACU016184/1-596 NMGHSAVPTH WYPYTLESGN YLEINKNMDG SSMKQHLRNN YLQYWTVTYQ 551 600 ENSBTAP00000032584/1-599 ALPTVTSAGA SLLP------ --PEDNSEAS PVPPADNSG- ---------- ENSP00000361151/1-756 ALPTVTDQEA TPVP------ --PTGDSEAT PVPPTGDSET APVPPTGDSG ENSTTRP00000013687/1-614 ALPTVTGEGA TPAPTAGHSE ATTAGDSEAT PAPTAGDSEA TP-------- bmy_05382T0/1-613 ALPTETGEGA TPAP------ --PAGDSEAT PVPPAGDSEA TP-------- BACU016184/1-596 ARPAETGEGP PPAP------ --PTGDSEAT SVPATGDSEA TP-------- 601 650 ENSBTAP00000032584/1-599 ---------- ---------- ---------- ---------- ---------- ENSP00000361151/1-756 APPVPPTGDS GAPPVPPTGD SGAPPVPPTG DSGAPPVPPT GDSGAPPVPP ENSTTRP00000013687/1-614 ---------- ---------- ---------- ---------- ---------- bmy_05382T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU016184/1-596 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000032584/1-599 ---------- ---------- ---------- ---------- ---------- ENSP00000361151/1-756 TGDSGAPPVP PTGDSGAPPV PPTGDSGAPP VPPTGDAGPP PVPPTGDSGA ENSTTRP00000013687/1-614 ---------- ---------- ---------- ---------- ---------- bmy_05382T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU016184/1-596 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000032584/1-599 ---------- ---------- ---------- --APTE---- -------PSA ENSP00000361151/1-756 PPVPPTGDSG APPVTPTGDS ETAPVPPTGD SGAPPVPPTG DSEAAPVPPT ENSTTRP00000013687/1-614 ---------- ---------- ---------- --APTV---G DSEATPAPTA bmy_05382T0/1-613 ---------- ---------- ---------- --APPAPTVG DSEATPTPPA BACU016184/1-596 ---------- ---------- ---------- --TTPA---G DSEPTPATPA 751 800 ENSBTAP00000032584/1-599 GDSEVAQMPV VIGF ENSP00000361151/1-756 DDSKEAQMPA VIRF ENSTTRP00000013687/1-614 GHSEATT--- ---- bmy_05382T0/1-613 GDSEVAQMPI VIGF BACU016184/1-596 GDSEVAQMPI VIGF