KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:11 2014 Check: 00 .. Name: ENSP00000263671/1-451 Len: 480 Check: 4400 Weight: 1.00 Name: ENSTTRP00000005453/1-452 Len: 480 Check: 42 Weight: 1.00 Name: ENSBTAP00000032603/1-430 Len: 480 Check: 7248 Weight: 1.00 Name: bmy_01325T0/1-368 Len: 480 Check: 2624 Weight: 1.00 Name: BACU004988/1-453 Len: 480 Check: 6755 Weight: 1.00 // 1 50 ENSP00000263671/1-451 MVPEVRVLSS LLGLALLWFP LDSHARARPD MFCLFHGKRY SPGESWHPYL ENSTTRP00000005453/1-452 MVPEVRVLSS LLGLALLWFP LDSHARARPD MFCLFHGKRY SPGESWHPYL ENSBTAP00000032603/1-430 MVPEVRVLSS LLGLALLWFP LDSHARARPD MFCLFHGKRY SPGESWHPYL bmy_01325T0/1-368 ------MIAS LL-------R CKNHQSAHVS CYRLHCPPVH CP----QPVT BACU004988/1-453 MVPEVRVLSS LLGLALLWFP LDSHARARPD MFCLFHGKRY SPGESWHPYL 51 100 ENSP00000263671/1-451 EPQGLMYCLR CTCSEGA--- -------HVS CYRLHCPPVH CPQPVTEPQQ ENSTTRP00000005453/1-452 EPQGLMYCLR CTCSESA--- -------HVS CYRLHCPPVH CPQPVTEPQQ ENSBTAP00000032603/1-430 EPQGLMYCLR CTCSENA--- -------HVS CYRLHCPPVH CPQPVTEPQQ bmy_01325T0/1-368 EPQ--QCCPR C--------- ---------- ---------- ---------- BACU004988/1-453 EPQGLMYCLR CTCSEPTPTQ YPPQALVQST GWNKREPHVV QNSQTRPPAE 101 150 ENSP00000263671/1-451 CCP------- ------KCVE PHTPSGLRAP PKSCQHNGTM YQHGEIFSAH ENSTTRP00000005453/1-452 CCP------- ------RCVE PHTPSGLRAP PRSCQHNGTT YQHGEIFSAH ENSBTAP00000032603/1-430 CCP------- ------RCVE PHTPSGLRAP PRSCQHNGTT YQHGEIFSAH bmy_01325T0/1-368 ---------- --------VE PHTPSGLRAP PRSCQHNGTT YQHGEIFSAH BACU004988/1-453 GDPWNERGSL QTPELLRHQE PHTPSGLRAP PRSCQHNGTT YQHGEIFSAH 151 200 ENSP00000263671/1-451 ELFPSRLPNQ CVLCSCTEGQ IYCGLTTCPE PGCPAPLPLP DSCCQACKDE ENSTTRP00000005453/1-452 ELLPSRLPNQ CALCSCTEGQ IYCGLMTCPE PGCPAPLLLP ASCCQACKDG ENSBTAP00000032603/1-430 ELLPSHLPNQ CVLCSCTEGQ IYCGLMTCPE PGCPAPLPLP ASCCQACKDG bmy_01325T0/1-368 ELLPSRLPNQ CVLCSCTEGQ IYCGLMTCPD PGCPAPLLLP ASCCQACKDG BACU004988/1-453 ELLPSRLPNQ CVLCSCTEGQ IYCGLMTCPD PGCPAPLLLP ASCCQACKDG 201 250 ENSP00000263671/1-451 ASEQSDEEDS VQSLHGVRHP QDPCSSDAGR KRGPGTPAPT GLSAPLSFIP ENSTTRP00000005453/1-452 SSEKSAEEDA TQSHRGVRHS QDPCSGDGGR KRDLSTPSPT GPSAPLGFLP ENSBTAP00000032603/1-430 SSEKSAEEDT TQSHQGVKHS QDLCSGDSGR KRDLSTPSPT GPSASLGFIP bmy_01325T0/1-368 SSEKSAEEDA TQSPRGVRHS QDPCSGDGGR KRDPSTPSPT GPSAPLGFLP BACU004988/1-453 SSEKSAEEDA TQSPRGVRHS QDPCSGDGGR KRDPSTPSPT GPSAPLGFLP 251 300 ENSP00000263671/1-451 RHFRPKGAGS TTVKIVLKEK HKKACVHGGK TYSHGEVWHP AFRAFGPLPC ENSTTRP00000005453/1-452 RHFRPKEAGS TTVKIVLKEK HKKACVHGGK TYSHGEVWHP AFRSFGPLPC ENSBTAP00000032603/1-430 RHFRPKEAGS TTVKIVLKEK HKKACVHGGK TYSHGEVWHP AFRSFGPLPC bmy_01325T0/1-368 RHFRPKEAGS TTVKIVLKEK HKKACVHGGK TYSHGEVWHP AFRSFGPLPC BACU004988/1-453 RHFRPKEAGS TTVKIVLKEK HKKACVHGGK TYSHGEVWHP AFRSFGPLPC 301 350 ENSP00000263671/1-451 ILCTCEDGRQ DCQRVTCPTE YPCRHPEKVA GKCCKICPED KADPGHSEIS ENSTTRP00000005453/1-452 ILCTCQDGRQ DCQRVTCPTE YPCRQPKKVA GKCCKICPED KADPGHSEIS ENSBTAP00000032603/1-430 ILCTCQDGRQ DCQRVICPTA YPCHHPEKVA GKCCKICPED KADSGHSEIS bmy_01325T0/1-368 ILCTCQDGRQ DCQRVTCPTE YPCRQPKKVA GKCCKICPED KADPGHSEIS BACU004988/1-453 ILCTCQDGRQ DCQRVTCPTE YPCLQPKKVA GKCCKICPED KADPDHSEIS 351 400 ENSP00000263671/1-451 STRCPKAPGR VLVHTSVSPS PDNLRRFALE HEASDLVEIY LWKLVKDEET ENSTTRP00000005453/1-452 ATKCPKAPGR VLVHTSVSPS PDNLRRLALE REASEQVEIY LWKLVEDEET ENSBTAP00000032603/1-430 ATKCPKAPGR VLVHTSVSPS PDNLRRFALE REASEQVEIY LWKLVKGIFH bmy_01325T0/1-368 ATKCPKAPGR VLVHTSVSPS PDNLRRFALE REASEQVEIY LWKLIK---- BACU004988/1-453 ATKCPKAPGR VLVHTSVSPS PDNLRRFALE REASDQVEIY LWKLVKGIFH 401 450 ENSP00000263671/1-451 EAQRGEVPGP RPHSQNLPLD SDQESQEARL PERGTALPTA RWP----PRR ENSTTRP00000005453/1-452 EAQRGEVPGP RPHSQNLPLD SDQESQEARL PERGTELPVA HWH----PQR ENSBTAP00000032603/1-430 LIQIKKVRKQ ---------D FQKEAQNFRL L---TGTHEG HWNIFLAQTP bmy_01325T0/1-368 -----KVRKQ ---------D FQKEAQNFRL L---TGTHKG HWNVFLAQTP BACU004988/1-453 LIQIKKVRKQ ---------D FQKEAQNFRL L---TGTHKG HWNVFLAQTP 451 500 ENSP00000263671/1-451 SLERLPSPDP GAEGHGQSRQ SDQD-ITKT- ENSTTRP00000005453/1-452 SLERLPSPDP GAEGHGQSRQ SDQDLVTQT- ENSBTAP00000032603/1-430 ELKVTASPDK ---------- -----MTKTL bmy_01325T0/1-368 ELKVTASPDK ---------- -----VTKTL BACU004988/1-453 ELKVTASPDK ---------- -----VTRTL