KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:42:14 2014 Check: 00 .. Name: ENSP00000453302/1-824 Len: 1212 Check: 7891 Weight: 1.00 Name: BACU004793/1-1028 Len: 1212 Check: 5146 Weight: 1.00 Name: ENSBTAP00000032645/1-834 Len: 1212 Check: 200 Weight: 1.00 Name: bmy_09755T0/1-1108 Len: 1212 Check: 4465 Weight: 1.00 // 1 50 ENSP00000453302/1-824 MRGLGLWLLG AMMLPAIAPS RPWALMEQYE VVLPWRLPGP RVRRALPSHL BACU004793/1-1028 MHGLGLLLLA ALWLQEAAPR ASLPHVEQYE VVRPRRLPPP PPRRALPSHS ENSBTAP00000032645/1-834 ---LGLLLFA ALGLQEVAPR AALPHVEQYE VVRPRRLPAP RARRALPSHL bmy_09755T0/1-1108 MHGLGLLLLA ALWLQEAAPR ATLPHVEQYE VVRPRRLPAP RTRRALPSHL 51 100 ENSP00000453302/1-824 GLHPERVSYV LGATGHNFTL HLRKNRDLLG SGYTETYTAA NGSEVTEQPR BACU004793/1-1028 GLYPESVSYV LGAQGHTFTL HLRKNRDLVG SGYVETYTAA DGAQVTEQLP ENSBTAP00000032645/1-834 GLYPESVSYV LGARGHTFTL HLRKNRDLVG SGYVETYTAA NGSQVTEQLQ bmy_09755T0/1-1108 GLYPESVSYV LGARGHTFTL HLRKNRDLVG SGYVETYTAA DGSQVTEQLP 101 150 ENSP00000453302/1-824 GQDHCFYQGH VEGYPDSAAS LSTCAGLRGF FQVGSDLHLI EPLDEGGEGG BACU004793/1-1028 RQDHCFYQGN VEGHQGSAAS LSTCTGLRGF FQAGSTVHLI EPLDGGGEEG ENSBTAP00000032645/1-834 RQDHCFYQGH VEGHPHSAAS LSTCAGLRGF FQAGPAVRLI EPLAEAGEEG bmy_09755T0/1-1108 RQDHCFYQGN VEGHQGSAAS LSTCAGLRGF FQAGSTVHLI EPLDGGGEEG 151 200 ENSP00000453302/1-824 RHAVYQAEHL LQTAGTCGVS DDSLGSLLGP RTAAVFRPRP GDSLPSRETR BACU004793/1-1028 QHALYQAQHL QQKAGTCGVN DSSLEAVLGP RVSAALRPR- -NWPVPRETR ENSBTAP00000032645/1-834 PHALYLAQHL QQEAGTCGVN DSSLESILGP RVSAAFRPR- -KWSEPRETR bmy_09755T0/1-1108 QHALYQAQHL QQKAGTCGVN DSSLEAILGP RVSAALRPR- -NWPVPRETR 201 250 ENSP00000453302/1-824 YVELYVVVDN AEFQMLGSEA AVRHRVLEVV NHVDKLYQKL NFRVVLVGLE BACU004793/1-1028 YVELFVVTDS TEFQRLGSRE AVRQRVLEVV NHVDKLYQEL NFRVVLVGLE ENSBTAP00000032645/1-834 YVELFVVTDS KEFQRFGSRE AVRQRVLEVV NHVDKLYQEL NFRVVLVGLE bmy_09755T0/1-1108 YVELFVVTDS TEFQRLGSRE AVRQRVLEVV NHVDKLYQEL NFRVVLVGLE 251 300 ENSP00000453302/1-824 IWNSQDRFHV SPDPSVTLEN LLTWQARQRT RRHLHDNVQL ITGVDFTGTT BACU004793/1-1028 MWNGGDKIDV STQADTTLSN FLSWRVQDLA GRHLHDNAQF ITGVNFAGTT ENSBTAP00000032645/1-834 MWNGGDKIQI SSQPDATLDN FLAWRTRELV GRQAHDNVQL ITGVDFTGTT bmy_09755T0/1-1108 MWNGGDKIHV STQADATLSN FLSWRVRELA GRHLHDNAQF ITGVDFAGTT 301 350 ENSP00000453302/1-824 VGFARVSAMC SHSSGAVNQD HSKNPVGVAC TMAHEMGHNL GMDHDENVQG BACU004793/1-1028 VGLAKVSAMC SQDSGAVNQD HSPNPMGVAS TMAHEMGHNL GMDHDENIQD ENSBTAP00000032645/1-834 VGLAKVSTMC SSSSGAVNQD HSQNPIGVAS TMAHEMGHNL GMDHDENVAG bmy_09755T0/1-1108 VGLAKVSTMC SRDSGAVNQD HSPNPMGVAS TMAHEMGHNL GMDHDENIQD 351 400 ENSP00000453302/1-824 CRCQERFEAG RCIMAGSIGS SFPRMFSDCS QAYLESFLER PQSVCLANAP BACU004793/1-1028 CYCPVPRAGG GCVMAASXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000032645/1-834 CYCPVPREGG GCVMAASIGS QYPRKFSQCS QADLETFVEN PRTACLLDAP bmy_09755T0/1-1108 CYCSVPRAGG GCVMAASIGS NFPRKFSHCS RADLETFVEK ARTACLVDAP 401 450 ENSP00000453302/1-824 DLSHLVGGPV CGNLFVERGE QCDCG----- ---------- ---------- BACU004793/1-1028 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000032645/1-834 DLDRLVGGPV CGNGFLERGE QCDCG----- ---------- ---------- bmy_09755T0/1-1108 DPARLVGGPV CGNRFVERGE QCDCG----- ---------- ---------- 451 500 ENSP00000453302/1-824 ---------- ---------- ---------- ---------- ---------- BACU004793/1-1028 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000032645/1-834 ---------- ---------- ---------- ---------- ---------- bmy_09755T0/1-1108 ---------- ---------- ---------- ---------- --VPQVQGRA 501 550 ENSP00000453302/1-824 ---------- ---------- ---------- ---------- ---------- BACU004793/1-1028 XXXXXXXXRP RGGPAPIHRL GRPFLSP--- ---------- ---------- ENSBTAP00000032645/1-834 ---------- ---------- ---------- ---------- ---------- bmy_09755T0/1-1108 PPPPSAFRPP TWGAGPHPQA GATVPDPRAP CARTATPPVL WHRNDWQGSW 551 600 ENSP00000453302/1-824 ---------- ---------- -------PPE DCRNRCCNST TCQLAEGAQC BACU004793/1-1028 ---------- --GRPALAQR HLLSSGTETT DCQNRCCNAS TCLLAKGAEC ENSBTAP00000032645/1-834 ---------- ---------- -------RPE DCQNRCCNAS TCLLAEGAEC bmy_09755T0/1-1108 VGVTRPPEGR AWGRPSVQPA QTFAIAPAPQ DCQNRCCNAS TCLLAKGAEC 601 650 ENSP00000453302/1-824 AHGTCCQECK ---------- ---------- ---------V KPAGELCRPK BACU004793/1-1028 AHGTCCHECR ---------- ---------- ---------V KPAGEPCRPA ENSBTAP00000032645/1-834 AHGTCCHECR ---------- ---------- ---------V KPAGELCRPV bmy_09755T0/1-1108 AHGTCCHECR VSLGFWGTAA GVGVWGPPVP AVSLALLNQV KPAGELCRPA 651 700 ENSP00000453302/1-824 KDMCDLEEFC DGRHPECPED AFQENGTPCS GGYCYNGACP TLAQQCQAFW BACU004793/1-1028 KDQCDLREYC DGRQPLCPED AFWENGTPCP GGYCYNGACP TLAQRCRDLW ENSBTAP00000032645/1-834 KDQCDLGEHC DGQQPTCPED AFRENGTPCP GGYCYNGACP TLARRCQDLW bmy_09755T0/1-1108 KDQCDLREYC DGRQPVCPED TFWENGTPCP GGYCYNGACP TLAQRCQDLW 701 750 ENSP00000453302/1-824 GPGGQAAEES CFSYDILPGC KASR----YR ADMCGVLQCK GGQQPLGRAI BACU004793/1-1028 GPGARVATET CYSYSISAGC RSGIPLDFGR VNRCGTLFCE WGQKPPERSS ENSBTAP00000032645/1-834 GPGSRVAVET CFLYSISKGC GAGVPLPFGR VNKCGTLFCE GGQKTPERGY bmy_09755T0/1-1108 GPGARVATET CYSYSISTGC RSGIPLDFGR VNRCGTLFCE WGQKPPERSS 751 800 ENSP00000453302/1-824 CIVDV----C HALTTEDGTA YEPVPEGTRC GPEKVCWKGR CQDLHVYRSS BACU004793/1-1028 CTLTSSSGDC QALVQDSSSA YEPVPEGTKC GKEQVCWKGF CQDLRVYRSR ENSBTAP00000032645/1-834 CTLTISSGVC RVIVQDGSTE YEPVPKGTKC GEQQVCWDGF CQGLHVYRSR bmy_09755T0/1-1108 CTLTSSSGDC QALVQDSSSA YEPVPEGTKC GKEQVC---- ---------- 801 850 ENSP00000453302/1-824 NCSAQCHNHG VCNHKQECHC HAGWAPPHCA KLLTEVH--- AASGSLPVFV BACU004793/1-1028 NCSARCSNHG VCNHKDQCHC HPGWAPPYCA ELLPNVR--- TASGSLLVGV ENSBTAP00000032645/1-834 NCSAQCNSHG ECNHKGQCHC RPGWAPPHCA EPLADARAAP TAPGSLRTHV bmy_09755T0/1-1108 ---------- --NHKDQCHC HPGWAPPYCA ELLPNVR--- TASGSLLVGV 851 900 ENSP00000453302/1-824 VVVLVLLAVV LVTLAGIIVY RKARSRILSR NV-------- ---------- BACU004793/1-1028 LVPVALLVPL ALTLAGVVIY RKARNPVRRR NV-------- ---------- ENSBTAP00000032645/1-834 LVGVGALVVL ALILAGVLIY RKARSPVRRR NV-------- ---------- bmy_09755T0/1-1108 LVPVVLLVPL ALTLAGVVIY RKARSPVRRR CASSGLAERQ RVCAEPAACL 901 950 ENSP00000453302/1-824 ---------- --------AP KTTMGRSNPL FHQAASRVPA KGGAPAPSRG BACU004793/1-1028 ---------- --------AA KTAMGLSNPL FHE-GHRTPV KGRAPAPTRG ENSBTAP00000032645/1-834 ---------- --------AP KTAMGLSNPL FHE-GLSKPA KGGAQAPPGG bmy_09755T0/1-1108 RCWRGRARSG PPAFTDTGAA KTAMGLSNPL FHE-GHRTPV KGRAPAPTR- 951 1000 ENSP00000453302/1-824 PQELVPTTHP GQPARHPASS VALKRPPPAP PVTVSSPPFP VPVYTRQA-- BACU004793/1-1028 PPEPGLSSHP SQPPKPTASA VTPKWPPTAP PAAMSSPLPP VPVYTRQA-- ENSBTAP00000032645/1-834 SPELALYS-- -QPHKPTASS VTPKRPPPAP PAAKASPPSP LPVYPPQA-- bmy_09755T0/1-1108 --EPGLSSHP SQPPKPTASA VTPKWPPPAV VKPTCTPPMP -PVKPRAGGA 1001 1050 ENSP00000453302/1-824 -P-------- ---------- ---------- ---------- ---------- BACU004793/1-1028 -PGQAQGTMC P--------- --VTPDGAAG NEMATGLCGY RGGASRKVLH ENSBTAP00000032645/1-834 -PGQL----- ---------- ---------- ---------- RPAPPAKPLP bmy_09755T0/1-1108 QPGPTQGVVG PKVALKPPDQ RRLYPARSAR AERAASTQRG RRPSPSDPAP 1051 1100 ENSP00000453302/1-824 --------KQ VI---KPTFA ---------- -------PPV -PPVKPGA-- BACU004793/1-1028 KLGFCVSEEE IC---KEEAS TPGAIEPVSC AVRDKVEAGE DPPGRAGH-- ENSBTAP00000032645/1-834 VL----KPKQ VI---KPTCA ---------- -------PPM -PPIKPGA-- bmy_09755T0/1-1108 VSRQRPRPSA AVSRQRPDHP -PGSTVGAGT LGAARPSPPA RPPLLPGALR 1101 1150 ENSP00000453302/1-824 ---------- ---------- ---------- ---------- --GAANP--- BACU004793/1-1028 ---------- --------AV DMHHGAALSV PQTQGAGLKA HFGEMKA--- ENSBTAP00000032645/1-834 ---------- ---------- ---------- ---------- --RGAQP--- bmy_09755T0/1-1108 GLYAWLDALP LSRRKRHLAR DFSDGGEGGA AATTGAGGRG DRRGSRPQGR 1151 1200 ENSP00000453302/1-824 ---------- ---------- ---------- ---GPAEGAV GPKVALKPPI BACU004793/1-1028 ---------- ---------- ---------- -----ARLEH LVKLEDQRLE ENSBTAP00000032645/1-834 ---------- ---------- ---------- ---GPTQGAA DPKVALKPPV bmy_09755T0/1-1108 RLSAGSWRSL LRGRAQRSSL PASESPERDV PVVGTARQGP QPRKCPRSPG 1201 1250 ENSP00000453302/1-824 QRKQGAGAPT AP BACU004793/1-1028 SSRNRDQPR- -- ENSBTAP00000032645/1-834 QRR------- -- bmy_09755T0/1-1108 SLQNAEDPRG RA