KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:14 2014 Check: 00 .. Name: ENSTTRP00000015626/1-877 Len: 893 Check: 4441 Weight: 1.00 Name: BACU020449/1-871 Len: 893 Check: 832 Weight: 1.00 Name: bmy_04083T0/1-672 Len: 893 Check: 5446 Weight: 1.00 Name: ENSP00000362014/1-864 Len: 893 Check: 9260 Weight: 1.00 Name: ENSBTAP00000032672/1-856 Len: 893 Check: 3048 Weight: 1.00 // 1 50 ENSTTRP00000015626/1-877 SERAAA-AEP KPGAQAAAGS QPVGPAATMG NRGMEDLIPL VNRLQDAFSA BACU020449/1-871 SERAAAAAEP KPGAQAAAGS QPAGPAATMG NRGMEDLIPL VNRLQDAFSA bmy_04083T0/1-672 ---------- ---------- --------MG PRWV----PA IMMLTPP--- ENSP00000362014/1-864 ---------- ---------- --------MG NRGMEDLIPL VNRLQDAFSA ENSBTAP00000032672/1-856 ---------- ---------- --------MG NRGMEDLIPL VNRLQDAFSA 51 100 ENSTTRP00000015626/1-877 IGQNADLDLP QIAVVGGQSA GKSSVLENFV GRDFLPRGSG IVTRRPLVLQ BACU020449/1-871 IGQNADLDLP QIAVVGGQSA GKSSVLENFV GRDFLPRGSG IVTRRPLVLQ bmy_04083T0/1-672 ---------- ---------- ---------- ----CPPPSG ---------- ENSP00000362014/1-864 IGQNADLDLP QIAVVGGQSA GKSSVLENFV GRDFLPRGSG IVTRRPLVLQ ENSBTAP00000032672/1-856 IGQNADLDLP QIAVVGGQSA GKSSVLENFV GRDFLPRGSG IVTRRPLVLQ 101 150 ENSTTRP00000015626/1-877 LVNATTEYAE FLHCKGKKFT DFEEVRLEIE AETDRVTGTN KGISPVPINL BACU020449/1-871 LVNATTEYAE FLHCKGKKFT DFEEVRQEIE AETDRVTGTN KGISPVPINL bmy_04083T0/1-672 -----AEYAE FLHCKGKKFT DFEEVRQEIE AETDRVTGTN KGISPVPINL ENSP00000362014/1-864 LVNATTEYAE FLHCKGKKFT DFEEVRLEIE AETDRVTGTN KGISPVPINL ENSBTAP00000032672/1-856 LVNATTEYAE FLHCKGKKFT DFEEVRLEIE AETDRVTGTN KGISPVPINL 151 200 ENSTTRP00000015626/1-877 RVYSPHVLNL TLVDLPGMTK VPVGDQPPDI EFQIRDMLMQ FVTKENCLIL BACU020449/1-871 RVYSPHVLNL TLVDLPGMTK VPVGDQPPDI EFQIRDMLMQ FVTKENCLIL bmy_04083T0/1-672 RVYSPH---- ---------- ---------- ---------- ---------- ENSP00000362014/1-864 RVYSPHVLNL TLVDLPGMTK VPVGDQPPDI EFQIRDMLMQ FVTKENCLIL ENSBTAP00000032672/1-856 RVYSPHVLNL TLVDLPGMTK VPVGDQPPDI EFQIRDMLMQ FVTKENCLIL 201 250 ENSTTRP00000015626/1-877 AVSPANSDLA NSDALKVAKE VDPQGQRTIG VITKLDVMDE GTDARDVLEN BACU020449/1-871 AVSPANSDLA NSDALKVAKE VDPQGQRTIG VITKLDLMDE GTDARDVLEN bmy_04083T0/1-672 ---------- ---------- ----GQRTIG VITKLDLMDE GTDARDVLEN ENSP00000362014/1-864 AVSPANSDLA NSDALKVAKE VDPQGQRTIG VITKLDLMDE GTDARDVLEN ENSBTAP00000032672/1-856 AVSPANSDLA NSDALKVAKE VDPQGQRTIG VITKLDLMDE GTDARDVLEN 251 300 ENSTTRP00000015626/1-877 KLLPLRRGYI GVVNRSQKDI DGKKDITAAL AAERKFFLSH PSYRHLADRM BACU020449/1-871 KLLPLRRGYI GVVNRSQKDI DGKKDITAAL AAERKFFLSH PSYRHLADRM bmy_04083T0/1-672 KLLPLRRGYI GVVNRSQKDI DGKKDITAAL AAERKFFLSH PSYRHLADRM ENSP00000362014/1-864 KLLPLRRGYI GVVNRSQKDI DGKKDITAAL AAERKFFLSH PSYRHLADRM ENSBTAP00000032672/1-856 KLLPLRRGYI GVVNRSQKDI DGKKDITAAL AAERKFFLSH PSYRHLADRM 301 350 ENSTTRP00000015626/1-877 GTPYLQKVLN QQLTNHIRDT LPGLRNKLQS QLLSIEKEVE EYKNFRPDDP BACU020449/1-871 GTPYLQKVLN QQLTNHIRDT LPGLRNKLQS QLLSIEKEVE EYKNFRPDDP bmy_04083T0/1-672 GTPYLQKVLN QQLTNHIRDT LPGLRNKLQS QLLSIEKEVE EYKNFRPDDP ENSP00000362014/1-864 GTPYLQKVLN QQLTNHIRDT LPGLRNKLQS QLLSIEKEVE EYKNFRPDDP ENSBTAP00000032672/1-856 GTPYLQKVLN QQLTNHIRDT LPGLRNKLQS QLLSIEKEVE EYKNFRPDDP 351 400 ENSTTRP00000015626/1-877 ARKTKALLQM VQQFAVDFEK RIEGSGDQID TYELSGGARI NRIFHERFPF BACU020449/1-871 ARKTKALLQM VQQFAVDFEK RIEGSGDQID TYELSGGARI NRIFHERFPF bmy_04083T0/1-672 ARKTKALLQM VQQFAVDFEK RIEGSGDQID TYELSGGARI NRIFHERFPF ENSP00000362014/1-864 ARKTKALLQM VQQFAVDFEK RIEGSGDQID TYELSGGARI NRIFHERFPF ENSBTAP00000032672/1-856 ARKTKALLQM VQQFAVDFEK RIEGSGDQID TYELSGGARI NRIFHERFPF 401 450 ENSTTRP00000015626/1-877 ELVKMEFDEK ELRREISYAI KNIHGIR-TG LFTPDMAFET IVKKQVKKIR BACU020449/1-871 ELVKMEFDEK ELRREISYAI KNIHGIRQTG LFTPDMAFET IVKKQVKKIR bmy_04083T0/1-672 ELVK------ ---------- ---------- ---------- -----VKKIR ENSP00000362014/1-864 ELVKMEFDEK ELRREISYAI KNIHGIR-TG LFTPDMAFET IVKKQVKKIR ENSBTAP00000032672/1-856 ELVKMEFDEK ELRREISYAI KNIHGIR-TG LFTPDLAFEA TVKKQVQKLK 451 500 ENSTTRP00000015626/1-877 EPCLKCVDMV ISELISTVRQ CTKKXXXXXX XXXXXXXXXX XXXXXXXXXX BACU020449/1-871 EPCLKCVDMV ISELISTVRQ CTKKVTSCPA SPCLCPALLC CQALLPH--- bmy_04083T0/1-672 EPCLKCVDMV ISELISTVRQ CTKKLQQYPR LREEMERIVT THIREREGRT ENSP00000362014/1-864 EPCLKCVDMV ISELISTVRQ CTKKLQQYPR LREEMERIVT THIREREGRT ENSBTAP00000032672/1-856 EPSIKCVDMV VSELTATIRK CSEKLQQYPR LREEMERIVT THIREREGRT 501 550 ENSTTRP00000015626/1-877 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVI BACU020449/1-871 LPQCLLVACT DLSGVGEAGH HRSLFAYPIF HGESWPLSTD FLPTPTLQVI bmy_04083T0/1-672 KEQVMLLIDI ELAYMNTNHE DFIGFANAQQ RSNQMNKKKA SGNQ----VI ENSP00000362014/1-864 KEQVMLLIDI ELAYMNTNHE DFIGFANAQQ RSNQMNKKKT SGNQDEILVI ENSBTAP00000032672/1-856 KEQVMLLIDI ELAYMNTNHE DFIGFANAQQ RSNQMNKKKA SGNQDEILVI 551 600 ENSTTRP00000015626/1-877 RKGWLTINNI GIMKGGSKEY WFVLTAENLS -HKDDEEKEK KYMLSVDNLK BACU020449/1-871 RKGWLTINNI GIMKGGSKEY WFVLTAENLS WYKDDEEKEK KYMLSVDNLK bmy_04083T0/1-672 RKGWLTINNI GIMKGGSKEY WFVLTAENLS WYKDDEEKEK KYMLSVDNLK ENSP00000362014/1-864 RKGWLTINNI GIMKGGSKEY WFVLTAENLS WYKDDEEKEK KYMLSVDNLK ENSBTAP00000032672/1-856 RKGWLTINNI GIMKGGSKEY WFVLTAENLS WYKDDEEKEK KYMLSVDNLK 601 650 ENSTTRP00000015626/1-877 LRDVEKGFMS SKHIFALFNT EQRNVYKDYR QLELACETQE EVDSWKASFL BACU020449/1-871 LRDVEKGFMS SKHIFALFNT EQRNVYKDYR QLELACETQE EVDSWKASFL bmy_04083T0/1-672 LRDVEKGFMS SKHIFALFNT EQRNVYKDYR QLELACETQE EVDSWKASFL ENSP00000362014/1-864 LRDVEKGFMS SKHIFALFNT EQRNVYKDYR QLELACETQE EVDSWKASFL ENSBTAP00000032672/1-856 LRDVEKGFMS SKHIFALFNT EQRNVYKDYR QLELACETQE EVDSWKASFL 651 700 ENSTTRP00000015626/1-877 RAGVYPERVG DKEKASETEE NGSDSFMHSM DPQLERQVET IRNLVDSYMA BACU020449/1-871 RAGVYPERVG DKEKASETEE NGSDNFMHSM DPQLERQVET IRNLVDSYMA bmy_04083T0/1-672 RAGVYPERVG ----ASETEE NGSDNFMHSM DPQLERQVET IRNLVDSYMA ENSP00000362014/1-864 RAGVYPERVG DKEKASETEE NGSDSFMHSM DPQLERQVET IRNLVDSYMA ENSBTAP00000032672/1-856 RAGVYPERVG DKEKASETEE NGSDSFMHSM DPQLERQVET IRNLVDSYMA 701 750 ENSTTRP00000015626/1-877 IVNKTVRDLM PKTIMHLMIN NXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU020449/1-871 IVNKTVRDLM PKTIMHLMIN NTKEFIFSEL LANLYSCGDQ NTLMEESAEQ bmy_04083T0/1-672 IVNKTVRDLM PKTIMHLMIN NTKEFIFSEL LANLYSCGDQ NTLMEESAEQ ENSP00000362014/1-864 IVNKTVRDLM PKTIMHLMIN NTKEFIFSEL LANLYSCGDQ NTLMEESAEQ ENSBTAP00000032672/1-856 IVNKTVRDLM PKTIMHLMIN NTKEFIFSEL LANLYSCGDQ NTLMEESAEQ 751 800 ENSTTRP00000015626/1-877 XXXXXXXXXX XXXXXXXXXX XXXXXXXXVS TPMPPPVHHS WLQVQSVPAG BACU020449/1-871 AQRRDEMLRM YHALKEALSI IGDINTTTVS TPMPPPVDDS WLQVQSVPAG bmy_04083T0/1-672 AQRRDEMLRM YHALKEALSI IGDINTTTVS TPMPPPVDDS WLQVQSVPAG ENSP00000362014/1-864 AQRRDEMLRM YHALKEALSI IGDINTTTVS TPMPPPVDDS WLQVQSVPAG ENSBTAP00000032672/1-856 AQRRDEMLRM YHALKEALSI IGDINTTTVS TPMPPPVDDS WLQVQSVPTG 801 850 ENSTTRP00000015626/1-877 PRSPTSSPTP QRRAPAVPPA RPGSRGPAPG PPPAGSALGG APPVPSRPGA BACU020449/1-871 RRSPTSSPTP QRRAPAVPPA RPGSRGPAPG PPPAGSALGG APPVPSRPGA bmy_04083T0/1-672 RRSPTSSPTP QRRAPAVPPA RPGSRGPAPG PPPAGSTLGG APPVPSRPGA ENSP00000362014/1-864 RRSPTSSPTP QRRAPAVPPA RPGSRGPAPG PPPAGSALGG APPVPSRPGA ENSBTAP00000032672/1-856 RRSPTSSPTP QRRAPAVPPA RPGSRGPAPG PPPAGSALGG APPVPSRPGA 851 900 ENSTTRP00000015626/1-877 SPDPFGPPPQ VPSRPNRAPP GVPRITISDP ---------- --- BACU020449/1-871 SPDPFGPPPQ VPSRPNRAPP GVPR------ ---------- --- bmy_04083T0/1-672 SPDPFGPPPQ VPSRPNRAPP GVP------- ---------- --- ENSP00000362014/1-864 SPDPFGPPPQ VPSRPNRAPP GVPSRSGQAS PSRPESPRPP FDL ENSBTAP00000032672/1-856 SPDPFGPPPQ VPSRPNRAPP GVPSQPIGSG KSIPS----- ---