KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:15 2014 Check: 00 .. Name: ENSP00000362344/1-587 Len: 626 Check: 2065 Weight: 1.00 Name: bmy_04068T0/1-618 Len: 626 Check: 3462 Weight: 1.00 Name: ENSBTAP00000032691/1-430 Len: 626 Check: 2315 Weight: 1.00 Name: BACU016267/1-580 Len: 626 Check: 9587 Weight: 1.00 Name: ENSTTRP00000015606/1-581 Len: 626 Check: 9853 Weight: 1.00 // 1 50 ENSP00000362344/1-587 MSRARSHLRA ALFLAAASAR GITTQVAARR GLSAWPVPQE PSMEYQDAVR bmy_04068T0/1-618 MSRARCHLRA ALFLAAVSSR GATTGVAARR VLSAWPAPQE PGMEYQDAVR ENSBTAP00000032691/1-430 MSRARCH--- ALFLAAVSPR GATTRVAVRR GLSAWPVLQE PDMEYQDAVR BACU016267/1-580 MSRARCHLRA ALFLAAVSSR GATTGVAARR VLSAWPAPQE PGMEYQDAVR ENSTTRP00000015606/1-581 MSRARCHLRA ALFLAAVSSR GATTGVAARR VLSAWPAPQE PGMEYQDAVR 51 100 ENSP00000362344/1-587 MLNTLQTNAG YLEQVKRQRG DPQTQLEAME LYLARSGLQV EDLDRLNIIH bmy_04068T0/1-618 TLNTLQTNAN FLEQVKRQRG DPQTQLEAMK LYLARSGLQV EDLDQLNIIH ENSBTAP00000032691/1-430 TLNTLQTNAN YLEMVKRKRG DPQTQLEAMK LYLARSGLQV EDLDQLNIIH BACU016267/1-580 TLNTLQTNAN YLEQVKRQRG DPQTQLEAMK LYLARSGLQV EDLDQLNIIH ENSTTRP00000015606/1-581 TLNTLQTNAN CLEQVKRQRG DPQTQLEAMR LYLARSGLQV EDLDQLNIIH 101 150 ENSP00000362344/1-587 VTGTKGKGST CAFTECILRS YGLKTGFFSS PHLVQVRERI RINGQPISPE bmy_04068T0/1-618 ITGTKGKGST CAFTERILRS YGLKTGFFSS PHLVQVRERI RINGQPISPE ENSBTAP00000032691/1-430 ITGTKGKGST CAFTERILRS YGLKTGFFSS PHLVQVRERI RINGQPISSE BACU016267/1-580 ITGTKGKGST CAFTERILRS YGLKTGFFSS PHLVQVRERI RINGQPISPE ENSTTRP00000015606/1-581 ITGTKGKGST CAFTERILRS YGLKTGFFSS PHLVQVRERI RINGQPISPE 151 200 ENSP00000362344/1-587 LFTKYFWRLY HRLEETK-DG SCVSMPPYFR FLTLMAFHVF LQEKVDLAVV bmy_04068T0/1-618 LFTKYFWRLY HRLEETKDDS SCVSMPGYFR FLTLMAFHVF LQEKVDLAVM ENSBTAP00000032691/1-430 LFTKHFWRLY HRLEETKDDS SCVSMPGYFR FLTLMAFHVF LQEKVDLAVL BACU016267/1-580 LFTKYFWRLY HRLEETKDDS SCVSMPGYFR FLTLMAFHVF LQEKVDLAVM ENSTTRP00000015606/1-581 LFTKHFWRLY HRLEETKDDS SCVSMPGYFR FLTLMAFHVF LQEKXXXXXX 201 250 ENSP00000362344/1-587 EVGIGGAYDC TNIIRKP-VV CGVSSLGIDH TSLLGDTVEK IAWQKGGIFK bmy_04068T0/1-618 EVGIGGAYDC TNIVKKP-VV CGVSSLGIDH TGLLGDTMEK IAWQKGGIFK ENSBTAP00000032691/1-430 EVGIGGAYDC TNIIRKP-VV CGITSLGIDH TGLLGDTMEK IAWQKGGIFK BACU016267/1-580 EVGIGGAYDC TNIVKKP-VV CGVSSLGIDH TGLLGDTMEK IAWQKGGIFK ENSTTRP00000015606/1-581 XXXXXXXXXX XXXXXXXHVV CGVSSLGIDH TGLLGDTMEK IAWQKGGIFK 251 300 ENSP00000362344/1-587 QGVPAFTVLQ PEGPLAVLRD RAQQISCPLY LCPMLEALEE GGPPLTLGLE bmy_04068T0/1-618 CGVPAFTVLQ PDGPLAVLRD RAQQISCPLY LCPPLEALEE GGPLLTLGLE ENSBTAP00000032691/1-430 SGVPAFTVLQ PDEPLAVLRD RAQQISCPLY LCPPLQALEE GGPPLTLGLE BACU016267/1-580 CGIPAFTVLQ PDGPLAVLRD RAQQISCPLY LCPPLEALEE GGPLLTLGLE ENSTTRP00000015606/1-581 CGVPAFTVLQ PDGPLAVLRD RAQQISCPLY LCPPLEALEE GGPLLTLGLE 301 350 ENSP00000362344/1-587 GEHQRSNAAL ALQLAHCWLQ RQDRHGAGEP KASRPGLLWQ LPLAPVFQPT bmy_04068T0/1-618 GEHQQSNAAL ALQLARCWLQ QKGYQDTGEL KASRPSLLGQ LPLAPVFQPT ENSBTAP00000032691/1-430 GEHQRSNAAL ALQVARCWLQ QKGYQDAGEL KASRPSLPGQ LPLAPVFQPT BACU016267/1-580 GEHQQSNAAL ALQLARCWLQ QKGYQDTGEL KASRPSLPGQ LPLAPVFQPT ENSTTRP00000015606/1-581 GEHQQANAAL ALQLARCWLQ QKGYRDTGEL KASRPSLLGQ LPLAPVFQPT 351 400 ENSP00000362344/1-587 SHMRLGLRNT EWPGRTQVLR RGPLTWYLDG AHTASSAQAC VRWFRQALQG bmy_04068T0/1-618 SHMQLGLRDT EWPGRTQLLR RGPLTWYLDG AHTTSSMQAC VRWFRQALHS ENSBTAP00000032691/1-430 PRMQQGLRHT EWPGRTQLLR RGPLTWYLDG AHTTSSMQAC VRWFRQALHR BACU016267/1-580 SHMQHGLRDT EWPGRTQLLR RGPLTWYLDG AHTTSSMQAC VRWFRQALHS ENSTTRP00000015606/1-581 SHMQHGLRDT EWPGRTQLLR RGPLTWYLDG AHTTSSMQAC VRWFRQALQS 401 450 ENSP00000362344/1-587 RERPSGGPEV RVLLFNATGD RDPAALLKLL -QPCQFDYAV FCPNLTEVSS bmy_04068T0/1-618 RERPGGGSEV RVLLFNSTGD RDSAVLLKLL -QPCQFDYTI FCPNLTEVSS ENSBTAP00000032691/1-430 CERPDSGSEV RVLLFNSTGD RDSAALLKLL QQPC------ ---------- BACU016267/1-580 RERPGGGSEV RVLLFNSTGD RDSAALLKLL -QPCQFDYTI FCPNLTEVSS ENSTTRP00000015606/1-581 RERPGGGSEV RVLLFNSTGD RDSAALLKLL -QXXQFDYTV FCPNLTEVSS 451 500 ENSP00000362344/1-587 TGNAD----- -----QQNFT VTLDQVLLRC LEHQQHWNHL DEEQASPDLW bmy_04068T0/1-618 TDNADAPVPV PRRPTELHSD PGPGAAPLPC --TPATLEPP ARGPGQPGAW ENSBTAP00000032691/1-430 ---------- ---------- ---------- ---------- ---------- BACU016267/1-580 TDNAD----- -----QQNFT VTLDQVLLRC LAHQQHWSRL HEDQA----- ENSTTRP00000015606/1-581 TDNAD----- -----QQNFT VTLDQVLLRC LAHQQHWSRL HEDQA----- 501 550 ENSP00000362344/1-587 SAPSPEPGGS ASLLLAPHPP HTCSASSLVF SCISHALQWI SQGRDPIFQP bmy_04068T0/1-618 WACTPAAGTP PS----PHPQ HQLPRLQLHF PRLAVDQPRP GPCLSANQSP ENSBTAP00000032691/1-430 ---------- ---------- ---------- ---------- ---------- BACU016267/1-580 ---SPEPGGP APLLLAPRPA HTHSTSSLVF SCISHALQWI SQGRDPVFQP ENSTTRP00000015606/1-581 ---SPEPGGP APLLLAPRPA HTHSASSLVF SCISHALQWI SQGRDPVFQP 551 600 ENSP00000362344/1-587 PSP------- -----PKGLL THPVAH---- -SGASILREA AAIHVLVTGS bmy_04068T0/1-618 TGPLGPPCGR QWGHRPPGGC CHPRAGHRQP APGGRRAEAA GALPVPVAEA ENSBTAP00000032691/1-430 ---------- ---------- ---------- ---------- ---------- BACU016267/1-580 TSP------- -----PRVLF AHPVAG---- -SGAIVLQEA AAIHVLVTGS ENSTTRP00000015606/1-581 PSP------- -----PRVLF AHPVAG---- -SGAIILQEA AAIHVLVTGS 601 650 ENSP00000362344/1-587 LHLVGGVLKL LEPALSQ--- ------ bmy_04068T0/1-618 VGLEVGFPHT CPAFRHELNY VLFVPS ENSBTAP00000032691/1-430 ---------- ---------- ------ BACU016267/1-580 LHLVGGVLKL LEPSLSQ--- ------ ENSTTRP00000015606/1-581 LHLVGGVLKL LEPSLSQ--- ------