KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:17 2014 Check: 00 .. Name: ENSTTRP00000016072/1-1191 Len: 1191 Check: 7476 Weight: 1.00 Name: ENSP00000362774/1-1191 Len: 1191 Check: 109 Weight: 1.00 Name: ENSBTAP00000032718/1-1191 Len: 1191 Check: 9830 Weight: 1.00 Name: bmy_19136T0/1-1149 Len: 1191 Check: 7292 Weight: 1.00 Name: BACU016312/1-1189 Len: 1191 Check: 9554 Weight: 1.00 // 1 50 ENSTTRP00000016072/1-1191 MPVQAAQWTE FLSCPICYNE FDENVHKPIS LGCSHTVCKT CLNKLHRKAC ENSP00000362774/1-1191 MPVQAAQWTE FLSCPICYNE FDENVHKPIS LGCSHTVCKT CLNKLHRKAC ENSBTAP00000032718/1-1191 MPVQAAQWTE FLSCPICYNE FDENVHKPIS LGCSHTVCKT CLNKLHRKAC bmy_19136T0/1-1149 MPVQAAQWTE FLSCPICYNE FDENVHKPIS LGCSHTVCKT CLNKLHRKAC BACU016312/1-1189 MPVQAAQWTE FLSCPICYNE FDENVHKPIS LGCSHTVCKT CLNKLHRKAC 51 100 ENSTTRP00000016072/1-1191 PFDQTAINTD IDVLPVNFAL LQLVGAQVPD HQSVKLSNLG ENKHYEVAKK ENSP00000362774/1-1191 PFDQTAINTD IDVLPVNFAL LQLVGAQVPD HQSIKLSNLG ENKHYEVAKK ENSBTAP00000032718/1-1191 PFDQTAINTD IDVLPVNFAL LQLVGAQVPD HQSVKLSNLG ENKHYEVAKK bmy_19136T0/1-1149 PFDQTAINTD IDVLPVNFAL LQLVGAQVPD HQSVKLSNLG ENKHYEVAKK BACU016312/1-1189 PFDQTAINTD IDVLPVNFAL LQLVGAQVPD HQSVKLSNLG ENKHYEVAKK 101 150 ENSTTRP00000016072/1-1191 CVEDLALYLK PLSGGKGVAS LNQSALSRPM QRKLVTLVNC QLVEEEGRVR ENSP00000362774/1-1191 CVEDLALYLK PLSGGKGVAS LNQSALSRPM QRKLVTLVNC QLVEEEGRVR ENSBTAP00000032718/1-1191 CVEDLALYLK PLSGGKGVAS LNQSALSRPM QRKLVTLVNC QLVEEEGRVR bmy_19136T0/1-1149 CVEDLALYLK PLSGGKGVAS LNQSALSRPM QRKLVTLVNC QLVEEEGRVR BACU016312/1-1189 CVEDLALYLK PLSGGKGVAS LNQSALSRPM QRKLVTLVNC QLVEEEGRVR 151 200 ENSTTRP00000016072/1-1191 AIRAARSLGE RTVTELILQH QNPQQLSANL WAAVRARGCQ FLGPAMQEEA ENSP00000362774/1-1191 AMRAARSLGE RTVTELILQH QNPQQLSANL WAAVRARGCQ FLGPAMQEEA ENSBTAP00000032718/1-1191 AIRAARSLGE RTVTELILQH QNPQQLSANL WAAVRARGCQ FLGPAMQEEA bmy_19136T0/1-1149 AIRAARSLGE RTVTELILQH QNPQQLSANL WAAVRARGCQ FLGPAMQEEA BACU016312/1-1189 AIRAARSLGE RTVTELILQH QNPQQLSANL WAAVRARGCQ FLGPAMQEEA 201 250 ENSTTRP00000016072/1-1191 LKLVLLALED GSALSRKVLV LFVVQRLEPR FPQASKTSIG HVVQLLYRAS ENSP00000362774/1-1191 LKLVLLALED GSALSRKVLV LFVVQRLEPR FPQASKTSIG HVVQLLYRAS ENSBTAP00000032718/1-1191 LKLVLLALED GSALSRKVLV LFVVQRLEPR FPQASKTSIG HVVQLLYRAS bmy_19136T0/1-1149 LKLVLLALED GSALSRKVLV LFVVQRLEPR FPQASKTSIG HVVQLLYRAS BACU016312/1-1189 LKLVLLALED GSALSRKVLV LFVVQRLEPR FPQASKTSIG HVVQLLYRAS 251 300 ENSTTRP00000016072/1-1191 CFKVTKRDED SSLMQLKEEF RSYEALRREH DAQIVHIAME AGLRISPEQW ENSP00000362774/1-1191 CFKVTKRDED SSLMQLKEEF RSYEALRREH DAQIVHIAME AGLRISPEQW ENSBTAP00000032718/1-1191 CFKVTKRDED SSLMQLKEEF RSYEALRREH DAQIVHIAME AGLRISPEQW bmy_19136T0/1-1149 CFKVTKRDED SSLMQLKEEF RSYEALRREH DAQIVHIAME AGLRISPEQW BACU016312/1-1189 CFKVTKRDED SSLMQLKEEF RSYEALRREH DAQIVHIAME AGLRISPEQW 301 350 ENSTTRP00000016072/1-1191 SSLLYGDLAH KSHMQSIIDK LQSPESFAKS VQELTIVLQR TGDPANLNRL ENSP00000362774/1-1191 SSLLYGDLAH KSHMQSIIDK LQSPESFAKS VQELTIVLQR TGDPANLNRL ENSBTAP00000032718/1-1191 SSLLYGDLAH KSHMQSIIDK LQSPESFAKS VQELTIVLQR TGDPANLNRL bmy_19136T0/1-1149 SSLLYGDLAH KSHMQSIIDK LQSPESFAKS VQELTIVLQR TGDPANLNRL BACU016312/1-1189 SSLLYGDLAH KSHMQSIIDK LQSPESFAKS VQELTIVLQR TGDPANLNRL 351 400 ENSTTRP00000016072/1-1191 RPHLELLANI DPNPDAVSPT WEQLEXAMVA VKTVVHGLVD FIQNYSRKGH ENSP00000362774/1-1191 RPHLELLANI DPNPDAVSPT WEQLENAMVA VKTVVHGLVD FIQNYSRKGH ENSBTAP00000032718/1-1191 RPHLELLANI DPNPDAVSPT WEQLENAMVA VKTVVHGLVD FIQNYSRKGH bmy_19136T0/1-1149 RPHLELLANI DPNPDAVSPT WEQLENAMVA VKTVVHGLVD FIQNYSRKGH BACU016312/1-1189 RPHLELLANI DPNPDAVSPT WEQLENAMVA VKTVVHGLVD FIQNYSRKGH 401 450 ENSTTRP00000016072/1-1191 ETPQPQPNSK YKTSMCRDLR QQGGCPRGTN CTFAHSQEEL EKYRLRNKKI ENSP00000362774/1-1191 ETPQPQPNSK YKTSMCRDLR QQGGCPRGTN CTFAHSQEEL EKYRLRNKKI ENSBTAP00000032718/1-1191 ETPQPQPNSK YKTSMCRDLR QQGGCPRGTN CTFAHSQEEL EKYRLRNKKI bmy_19136T0/1-1149 ETPQPQPNSK YKTSMCRDLR QQGGCPRGTN CTFAHSQEEL EKYRLRNKKI BACU016312/1-1189 ETPQPQPNSK YKTSMCRDLR QQGGCPRGTN CTFAHSQEEL EKYRLRNKKI 451 500 ENSTTRP00000016072/1-1191 NATVRTFPLL NKVGVNNTVT TTAGNVISVI GSTETTGKIV PSTNGISNAE ENSP00000362774/1-1191 NATVRTFPLL NKVGVNNTVT TTAGNVISVI GSTETTGKIV PSTNGISNAE ENSBTAP00000032718/1-1191 NATVRTFPLL NKVGVNNTVT TTAGNVISVI GSTETTGKIV PSTNGISNAE bmy_19136T0/1-1149 NATVRTFPLL NKVGVNNTVT TTAGNVISVI GSTETTGKIV PSTNGISNAE BACU016312/1-1189 NATVRTFPLL NKVGVNNTVT TTAGNVISVI GSTETTGKIV PSTNGISNAE 501 550 ENSTTRP00000016072/1-1191 NSVSQLIPRS TDSTLRALET VKKVGKVGTN GQNAAGPSAE SVTENKIGSP ENSP00000362774/1-1191 NSVSQLISRS TDSTLRALET VKKVGKVGAN GQNAAGPSAD SVTENKIGSP ENSBTAP00000032718/1-1191 NSVSQLIPRS TDSTLRALET VKKVGKVGTN GQNAAGPSVE SVTENKIGSP bmy_19136T0/1-1149 NSVSQLIPRS ADSTLRALET VKKVGKVGTN GQNAAGPSAE SVTENKIGSP BACU016312/1-1189 NSVSQLIPRS ADSTLRALET VKKVGKVGTN GQNAAGPSAE SVTENKIGSP 551 600 ENSTTRP00000016072/1-1191 PKTPVSNIAA TSAGPTNVGT ELNSVPPKSS PFITRVPVYP QHSENIQYFQ ENSP00000362774/1-1191 PKTPVSNVAA TSAGPSNVGT ELNSVPQKSS PFLTRVPVYP PHSENIQYFQ ENSBTAP00000032718/1-1191 PKTPVSNVAA TSAGPTSAGT ELNSVPPKSS PFITRVPVYP QHSENIQYFQ bmy_19136T0/1-1149 PKTPVSNIAA TSAGPTNVGT ELNSVPPKSS PFITRVPVYP QHSENIQYFQ BACU016312/1-1189 PKTPVSNIAA TSAGPTNVGT ELNSVPPKSS PFITRVPVYP QHSENIQYFQ 601 650 ENSTTRP00000016072/1-1191 DPRTQIPFEV PQYPQTGYYP PPPTVPAGVA PCVPRFVRSN NVPESSLPPA ENSP00000362774/1-1191 DPRTQIPFEV PQYPQTGYYP PPPTVPAGVA PCVPRFVRSN NVPESSLPPA ENSBTAP00000032718/1-1191 DPRTQIPFEV PQYPQTGYYP PPPTVPAGVA PCVPRFVRSN NVPESSLPPA bmy_19136T0/1-1149 DPRTQIPFEV PQYPQTGYYP PPPTVPAGVA PCVPRFVRSN NVPESSLPPA BACU016312/1-1189 DPRTQIPFEV PQYPQTGYYP PPPTVPAGVA PCVPRFVRSN NVPESSLPPA 651 700 ENSTTRP00000016072/1-1191 SMPYADHYST FSPRDRMNSS PYQPPPPQPY GPVPPVPSGM YAPVYDSRRI ENSP00000362774/1-1191 SMPYADHYST FSPRDRMNSS PYQPPPPQPY GPVPPVPSGM YAPVYDSRRI ENSBTAP00000032718/1-1191 SMPYADHYST FSPRDRMNSS PYQPPPPQPY GPVPPVPSGM YAPVYDSRRI bmy_19136T0/1-1149 SMPYADHYST FSPRDRMNSS PYQPPPPQPY GPVPPVPSGM YAPVYDSRRI BACU016312/1-1189 SMPYADHYST FSPRDRMNSS PYQPPPPQPY GPVPPVPSGM YAPVYDSRRI 701 750 ENSTTRP00000016072/1-1191 WRPPMYQRDD IIRSNSLPPM DVMHSSVYQT SLRERYNSLD GYYSVACQPP ENSP00000362774/1-1191 WRPPMYQRDD IIRSNSLPPM DVMHSSVYQT SLRERYNSLD GYYSVACQPP ENSBTAP00000032718/1-1191 WRPPVYQRDD IIRSNSLPPM DVMHSSVYQT SLRERYNSLD GYYSVACQPP bmy_19136T0/1-1149 WRPPMYQRDD IIRSNSLPPM D--------- ---------- ---------- BACU016312/1-1189 WRPPMYQRDD IIRSNSLPPM DVMHSSVYQT SLRERYNSLD GYYSVACQPP 751 800 ENSTTRP00000016072/1-1191 SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362774/1-1191 SEPRTTVPLP REPCGHLKTS CEEQIRRKPD QWAQYHTQKA PLVSSTLPVA ENSBTAP00000032718/1-1191 SEPRTTVPLP REPCGHLKTS CEEQIRRKPE QWAQYHTQKA PLVSSTLPVA bmy_19136T0/1-1149 ---------- -EPCGHLKTS CEEQIRRKPE QWAQYHTQKA PLVSSTLPVA BACU016312/1-1189 SEPRTTVPLP REPCGHLKTS CEEQIRRKPE QWAQYHTQKA PLVSSTLPVA 801 850 ENSTTRP00000016072/1-1191 XXXXXXXXXX XXXXXXXXFS VSVSGTKFEE DHLSHYSPWS CGTIGSCINA ENSP00000362774/1-1191 TQSPTPPSPL FSVDFRADFS ESVSGTKFEE DHLSHYSPWS CGTIGSCINA ENSBTAP00000032718/1-1191 TQSPTPPSPL FSVDFRTDFS ENVSGTKFED DHLSHYSPWS CGTIGSCINA bmy_19136T0/1-1149 TQSPTPPSPL FSVDFRTDFS ESVSGTKFEE DHLSHYSPWS CGTIGSCINA BACU016312/1-1189 TQSPTPPSPL FSVDFRTDFS ESVSGTKFEE DHLSHYSPWS CGTIGSCINA 851 900 ENSTTRP00000016072/1-1191 IDSEPRDVIA NSNAVLMDLD SGDVKRRVHL FETQRRTKEE DPIIPFSDGP ENSP00000362774/1-1191 IDSEPKDVIA NSNAVLMDLD SGDVKRRVHL FETQRRTKEE DPIIPFSDGP ENSBTAP00000032718/1-1191 IDSEPRDVIA NSNAVLMDLD SGDVKRRVHL FETQRRTKEE DPIIPFSDGP bmy_19136T0/1-1149 IDSEPRDVIA NSNAVLMDLD SGDVKRRVHL FETQRRTKEE DPIIPFSDGP BACU016312/1-1189 IDSEPRDVIA NSNAVLMDLD SGDVKRRVHL FETQRRTKEE DPIIPFSDGP 901 950 ENSTTRP00000016072/1-1191 IISKWGAISR SSRTGYHTTD PVQATASQGS ATKPISVSDY VPYVNAVDSR ENSP00000362774/1-1191 IISKWGAISR SSRTGYHTTD PVQATASQGS ATKPISVSDY VPYVNAVDSR ENSBTAP00000032718/1-1191 IISKWGAISR SSRTGYHTTD PVQATASQGS ATKPISVSDY VPYVNAVDSR bmy_19136T0/1-1149 IISKWGAISR SSRTGYHTTD PVQATASQGS ATKPISVSDY VPYVNAVDSR BACU016312/1-1189 IISKWGAISR SSRTGYHTTD PVQATASQGS ATKPISVSDY VPYVNAVDSR 951 1000 ENSTTRP00000016072/1-1191 WSSYGNEATS SAHYIERDRF IVTDLSGHRK HSSTGDLLSI ELQQAKSNSL ENSP00000362774/1-1191 WSSYGNEATS SAHYVERDRF IVTDLSGHRK HSSTGDLLSL ELQQAKSNSL ENSBTAP00000032718/1-1191 WSSYGNEATS SAHYIERDRF IVTDLSGHRK HSSTGDLLSI ELQQAKSNSL bmy_19136T0/1-1149 WSSYGNEATS SAHYIERDRF IVTDLSGHRK HSSTGDLLSI ELQQAKSNSL BACU016312/1-1189 WSSYGNEATS SAHYIERDRF IVTDLSGHRK HSSTGDLLSI ELQQAKSNSL 1001 1050 ENSTTRP00000016072/1-1191 LLQREANALA MQQKWNSLDE GRHLTLNLLS KEIELRNGEL QSDYTEDAAD ENSP00000362774/1-1191 LLQREANALA MQQKWNSLDE GRHLTLNLLS KEIELRNGEL QSDYTEDATD ENSBTAP00000032718/1-1191 LLQREANALA MQQKWNSLDE GRHLTLNLLS KEIELRNGEL QSDYTEDAAD bmy_19136T0/1-1149 LLQREANALA MQQKWNSLDE GRHLTLNLLS KEIELRNGE- -SDYTEDAAD BACU016312/1-1189 LLQREANALA MQQKWNSLDE GRHLTLNLLS KEIELRNGE- -SDYTEDAAD 1051 1100 ENSTTRP00000016072/1-1191 TKPDRDIELE LSALDTDEPD GQGEQIEEIL DIQLGISSQN DQLLNGTAVE ENSP00000362774/1-1191 TKPDRDIELE LSALDTDEPD GQSEPIEEIL DIQLGISSQN DQLLNGMAVE ENSBTAP00000032718/1-1191 TKPDRDIELE LSALDTDEPD GQGEQIEEIL DIQLGISSQN DQLLNGTAVE bmy_19136T0/1-1149 TKPDRDIELE LSALDTDEPD GQGEQIEEIL DIQLGISSQN DQLLNGTAVE BACU016312/1-1189 TKPDRDIELE LSALDTDEPD GQGEQIEEIL DIQLGISSQN DQLLNGTAVE 1101 1150 ENSTTRP00000016072/1-1191 NGHPVQQHQK EPLEQKRQSL DEDHVILEEQ KTILPVTSCF SQPLPVAISN ENSP00000362774/1-1191 NGHPVQQHQK EPPKQKKQSL GEDHVILEEQ KTILPVTSCF SQPLPVSISN ENSBTAP00000032718/1-1191 NGHPVQQHQE EPLEQKRQSL GEDRVILEEQ KTILPVTSCF SQPLPVSISN bmy_19136T0/1-1149 NGHPVQQHQK EPLEQKRQSL GEDHVILEEQ KTILPVTSCF SQPLPVSISN BACU016312/1-1189 NGHPVQQHQK EPLEQKRQSL GEDHVILEEQ KAILPVTSCF SQPLPVSISN 1151 1200 ENSTTRP00000016072/1-1191 ASCLPLATSV SVGNLILKTH VMSEDKNDFL KPVANGKMVN S ENSP00000362774/1-1191 ASCLPITTSV SAGNLILKTH VMSEDKNDFL KPVANGKMVN S ENSBTAP00000032718/1-1191 ASGLPITTSV SVGNLILKTH VMSEDKNDFL KSVANGKMVN S bmy_19136T0/1-1149 ASCLPLATSV SVGNLILKTH VMSEDKNDFL KPVANGKMVN S BACU016312/1-1189 ASCLPLATSV SVGNLILKTH VMSEDKNDFL KPVANGKMVN S