KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:18 2014 Check: 00 .. Name: ENSTTRP00000008878/1-1177 Len: 1198 Check: 7219 Weight: 1.00 Name: bmy_04586T0/1-743 Len: 1198 Check: 8141 Weight: 1.00 Name: ENSP00000259371/1-1132 Len: 1198 Check: 6152 Weight: 1.00 Name: BACU007288/1-886 Len: 1198 Check: 4067 Weight: 1.00 Name: ENSBTAP00000032751/1-1196 Len: 1198 Check: 3931 Weight: 1.00 // 1 50 ENSTTRP00000008878/1-1177 -MSAGGARKS TGRPSYYYRL LRRPRLQRQR SRSRSRTRPA RESPQERPGS bmy_04586T0/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000259371/1-1132 ---------- ---------- --------ME PDSLLDQDDS YESPQERPGS BACU007288/1-886 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032751/1-1196 MSAGGGARKS TGRPSYYYRL LRRPRLQRQR SRSRSRTRPA RASCQGQAKW 51 100 ENSTTRP00000008878/1-1177 RRSLPGSLSE KSPSMEASAA TPFRVTGFLS NRLKGSIKRT KSQPKMDRNH bmy_04586T0/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000259371/1-1132 RRSLPGSLSE KSPSMEPSAA TPFRVTGFLS RRLKGSIKRT KSQPKLDRNH BACU007288/1-886 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032751/1-1196 RSQL--SFSP LSPSLDLCAS GPCPLKGFLS RRLKGSIKRT KSQPKLDRNH 101 150 ENSTTRP00000008878/1-1177 SFRHILPGFR SAAAA----A ADNERSHLMP RLKESRSHES LLSPSSAVEA bmy_04586T0/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000259371/1-1132 SFRHILPGFR SAAAA----A ADNERSHLMP RLKESRSHES LLSPSSAVEA BACU007288/1-886 ---------- ---------- --------MP RLKESRSHES LLSPSSAVEA ENSBTAP00000032751/1-1196 SFRHILPGFR SAAAAAAASA ADNERSHLMP RLKESRSHES LLSPSSAVEA 151 200 ENSTTRP00000008878/1-1177 LDLSMEEEVV IKPVHSSILG QDYCFEVTTS SGSKCFSCRS AAERDKWMEN bmy_04586T0/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000259371/1-1132 LDLSMEEEVV IKPVHSSILG QDYCFEVTTS SGSKCFSCRS AAERDKWMEN BACU007288/1-886 LDLSMEEEVV IKPVHSSILG QDYCFEVTTS SGSKCFSCRS AAERDKWMEN ENSBTAP00000032751/1-1196 LDLSMEEEVV IKPVHSSILG QDYCFEVTTS SGSKCFSCRS AAERDKWMEN 201 250 ENSTTRP00000008878/1-1177 LRRAVHPNKD NSRRVEHILK LWVIEAKDLP AKKKYLCELC LDDVLYARTT bmy_04586T0/1-743 ---------- ---MVEQ--- ---------- ---------- ---------- ENSP00000259371/1-1132 LRRAVHPNKD NSRRVEHILK LWVIEAKDLP AKKKYLCELC LDDVLYARTT BACU007288/1-886 LRRAVHPNKD NSRRVEHILK LWVIEAKDLP AKKKYLCELC LDDVLYARTT ENSBTAP00000032751/1-1196 LRRAVHPNKD NSRRVEHILK LWVIEAKDLP AKKKYLCELC LDDVLYARTT 251 300 ENSTTRP00000008878/1-1177 GKLKTDNVFW GEHFEFHNLP PLRTVTVHLY RETDKKKKKE RNSYLGLVSL bmy_04586T0/1-743 ---------- ---------- ---------- ---------- -----GWNSV ENSP00000259371/1-1132 GKLKTDNVFW GEHFEFHNLP PLRTVTVHLY RETDKKKKKE RNSYLGLVSL BACU007288/1-886 GKLKTDNVFW GEHFEFHNLP PLRTVTVHLY RETDKKKKKE RNSYLGLVSL ENSBTAP00000032751/1-1196 GKLKTDNVFW GEHFEFHNLP PLRMVTVHLY RETDKKKKKE RSSYLGLVSL 301 350 ENSTTRP00000008878/1-1177 PAASVAGRQF VEKWYPVVTP NPKSGKGPGP MIRIKARYQT ITILPMEMYK bmy_04586T0/1-743 PSDPEPG--- -----PCSAP S-----GPGA L--------- ---------- ENSP00000259371/1-1132 PAASVAGRQF VEKWYPVVTP NPKGGKGPGP MIRIKARYQT ITILPMEMYK BACU007288/1-886 PAASVAGRQF VEKWYPVVTP NPKSGKGPGP MIRIKARYQT ITILPMEMYK ENSBTAP00000032751/1-1196 PAASVAGRQF VEKWYPVVTP NPKGGKGPGP MIRIKARYQT ITILPMEMYK 351 400 ENSTTRP00000008878/1-1177 EFAEHITNHY LGLCAALEPI LSAKTKEEMA SALVHILQST GKVKDFLTDL bmy_04586T0/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000259371/1-1132 EFAEHITNHY LGLCAALEPI LSAKTKEEMA SALVHILQST GKVKDFLTDL BACU007288/1-886 EFAEHITNHY LGLCAALEPI LSAKTKEEMA SALVHILQST GKVKDFLTDL ENSBTAP00000032751/1-1196 EFAEHITNHY LGLCAALEPI LSAKTKEEMA SALVHILQST GKVKDFLTDL 401 450 ENSTTRP00000008878/1-1177 MMSEVDRCGD -EHLIFRENT LATKAIEEYL KLVGQKYLQD ALGEFIKALY bmy_04586T0/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000259371/1-1132 MMSEVDRCGD NEHLIFRENT LATKAIEEYL KLVGQKYLQD ALGEFIKALY BACU007288/1-886 MMSEVDRCGD NEHLIFRENT LATKAIEEYL KLVGQKYLQD ALGEFIKALY ENSBTAP00000032751/1-1196 MMSEVDRCGD NEHLIFRENT LATKAIEEYL KLVGQKYLQD ALGEFIKALY 451 500 ENSTTRP00000008878/1-1177 ESDENCEVDP SKCSAADLPE HQGNLKMCCE LAFCKIINSY CVFPRELKEV bmy_04586T0/1-743 ---PDGQPTP PR-------- ---------- ------VSRH SVFPRELKEV ENSP00000259371/1-1132 ESDENCEVDP SKCSAADLPE HQGNLKMCCE LAFCKIINSY CVFPRELKEV BACU007288/1-886 ESDENCEVDP SKCSASDLPE HQGNLKMCCE LAFCKIINSY CVFPRELKEV ENSBTAP00000032751/1-1196 ESDENCEVDP SKCSAADLPE HQGNLKMCCE LAFCKIINSY CVFPRELKEV 501 550 ENSTTRP00000008878/1-1177 FASWRQECSS RGRPDISERL ISASLFLRFL CPAIMSPSLF NLLQEYPDDR bmy_04586T0/1-743 FASWRQECSS RGRPDISERL ISASLFLRFL CPAIMSPSLF NLLQEYPDDR ENSP00000259371/1-1132 FASWRQECSS RGRPDISERL ISASLFLRFL CPAIMSPSLF NLLQEYPDDR BACU007288/1-886 FASWRQECSS RGRPDISERL ISASLFLRFL CPAIMSPSLF NLLQEYPDDR ENSBTAP00000032751/1-1196 FASWRQECSS RGRPDISERL ISASLFLRFL CPAIMSPSLF NLLQEYPDDR 551 600 ENSTTRP00000008878/1-1177 TARTLTLIAK VTQNLANFAK FGSKEEYMSF MNQFLEHEWT NMQRFLLEIS bmy_04586T0/1-743 TARTLTLIAK VTQNLANFAK FGSKEEYMSF MNQFLEHEWT NMQRFLLEIS ENSP00000259371/1-1132 TARTLTLIAK VTQNLANFAK FGSKEEYMSF MNQFLEHEWT NMQRFLLEIS BACU007288/1-886 TARTLTLIAK VTQNLANFAK FGSKEEYMSF MNQFLEHEWT NMQRFLLEIS ENSBTAP00000032751/1-1196 TARTLTLIAK VTQNLANFAK FGSKEEYMSF MNQFLEHEWT NMQRFLLEIS 601 650 ENSTTRP00000008878/1-1177 NPETISNTAG FEGYIDLGRE LSSLHSLLWE AVSQLEQSIV SKLGPLPRIL bmy_04586T0/1-743 NPETISNTAG FEGYIDLGRE LSSLHSLLWE AVSQLEQSIV SKLGPLPRIL ENSP00000259371/1-1132 NPETLSNTAG FEGYIDLGRE LSSLHSLLWE AVSQLEQSIV SKLGPLPRIL BACU007288/1-886 NPETISNTAG FEGYIDLGRE LSSLHSLLWE AVSQLEQSIV SKLGPLPRIL ENSBTAP00000032751/1-1196 NPETVSNTAG FEGYIDLGRE LSSLHSLLWE AVSQLEQSIV SKLGPLPRIL 651 700 ENSTTRP00000008878/1-1177 RDVHTALSAP GSGQLAGTND LASTPGSGSS SISAGLQKMV IENDVSGXXX bmy_04586T0/1-743 RDVHTALSAP GSGQLAGTND LASTPGSGSS SISAGLQKMV IENDVSGLID ENSP00000259371/1-1132 RDVHTALSTP GSGQLPGTND LASTPGSGSS SISAGLQKMV IENDLSGLID BACU007288/1-886 RDVHTALSAP GSGQLAGTND LASTPGSGGS SISAGLQKMV IENDVSG--- ENSBTAP00000032751/1-1196 RDVHTALSTP GSGQLAGTND LASTPGSGSS SVSAGLQKMV IENDLSGLID 701 750 ENSTTRP00000008878/1-1177 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04586T0/1-743 FTRLPSPTPE NKDLFFVTRS SGVQPSPARS SSYSEANEPD LQMANGGKSL ENSP00000259371/1-1132 FTRLPSPTPE NKDLFFVTRS SGVQPSPARS SSYSEANEPD LQMANGGKSL BACU007288/1-886 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032751/1-1196 FTRLPSPTPE NKDLFFVTRS SGVQPSPARS SSYSEANEPD LQMANGGKSL 751 800 ENSTTRP00000008878/1-1177 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04586T0/1-743 SMVDLQDTRA LDGEASSPAG PDALAVDGQV PSTQLVAGWP ARVAPVSLAG ENSP00000259371/1-1132 SMVDLQDART LDGEAGSPAG PDVLPTDGQA AAAQLVAGWP ARATPVNLAG BACU007288/1-886 --------AV LD-------- ---------- ---QLV---- ---------- ENSBTAP00000032751/1-1196 SMVDLQDARV LDGEAGSPAG PDALTADGQA PATQLVAGWP ARAAPVSLAG 801 850 ENSTTRP00000008878/1-1177 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLPLSPRGL bmy_04586T0/1-743 LATVRRAGQT PTTAGTSEGA PGRPQLLAPL SFQNPVYQMA AGLPLSPRGL ENSP00000259371/1-1132 LATVRRAGQT PTTPGTSEGA PGRPQLLAPL SFQNPVYQMA AGLPLSPRGL BACU007288/1-886 ---------- ---------- ---------- --RNPVYQMA AGLPLSPRGL ENSBTAP00000032751/1-1196 LATVRRAGQT PTTPGTSEGA PGRPQLLAPL SFQNPVYQMA AGLPLSPRGL 851 900 ENSTTRP00000008878/1-1177 EDSG--GHSS LSSHSNSDE- AAAAKLGSFS STA------- -----GELAR bmy_04586T0/1-743 GDSGSEGHSS LSSHSNSEEL AAAAKLGSFS STA-----EE LGRRPGELAR ENSP00000259371/1-1132 GDSGSEGHSS LSSHSNSEEL AAAAKLGSFS TAA-----EE LARRPGELAR BACU007288/1-886 GDSGSEGHSS LSSHSNSEEL AAAAKLGSFS STA-----EE LGRRPGELAR ENSBTAP00000032751/1-1196 GDSGSEGHSS LSSHSNSEEL AAATKLGSFS SSTAAAAPED LGRRPGELAR 901 950 ENSTTRP00000008878/1-1177 RQVSLTEKGE QPPGPRQNSA GPQRRIDQPP PPPPPPPPAP RGRTPPTLLS bmy_04586T0/1-743 RQVSLTEKGG QPPGPRQNSA GPQRRIDQPP PPPPPPPPAP RGRTPPTLLS ENSP00000259371/1-1132 RQMSLTEKGG QPTVPRQNSA GPQRRIDQPP PPPPPPPPAP RGRTPPNLLS BACU007288/1-886 R--------- ---------- ---------- ---------- ---------- ENSBTAP00000032751/1-1196 RQVSLTEKGG QPTVPRQNSA GPQRRIDQPP PPPPPPPPAP RGRTPPTLLS 951 1000 ENSTTRP00000008878/1-1177 TLQYPRPSSG TLASASPDWA GPGARLRQQS SSSKGDSPEL KPRAVHKQGP bmy_04586T0/1-743 TLQYPRPSSG TLASASPDWA GPGARLRQQS SSSKGDSPEL KPRAVHKQGP ENSP00000259371/1-1132 TLQYPRPSSG TLASASPDWV GPSTRLRQQS SSSKGDSPEL KPRAVHKQGP BACU007288/1-886 --QYPRPSSG TLASASPDWA GPGGRLRQQS SSSKGDSPEL KPRAVHKQGP ENSBTAP00000032751/1-1196 TLQYPRPSSG TLASASPDWA GPGARLRQQS SSSKGDSPEL KPRAVHKQGP 1001 1050 ENSTTRP00000008878/1-1177 SPVSPNALDR TAAWLLTMNA QLLEDEGLGP DPPHRDRLRS KEELSQAEKX bmy_04586T0/1-743 SPVSPNALDR TAAWLLTMNA QLLEDEGLGP DPPHRDRLRS KEELSQAEKD ENSP00000259371/1-1132 SPVSPNALDR TAAWLLTMNA QLLEDEGLGP DPPHRDRLRS KDELSQAEKD BACU007288/1-886 SPVSPNALDR TAAWLLTMNA QLLEDEGLGP DPPHRDRLRS KEELSQAEKD ENSBTAP00000032751/1-1196 SPVSPNALDR TAAWLLTMNA QLLEDEGLGP DPPHRDRLRS KEELSQAEKD 1051 1100 ENSTTRP00000008878/1-1177 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04586T0/1-743 LAVLQDKLRI STKKLEEYET LFKCQEETTQ KLVLEYQARL EEGEERLRRQ ENSP00000259371/1-1132 LAVLQDKLRI STKKLEEYET LFKCQEETTQ KLVLEYQARL EEGEERLRRQ BACU007288/1-886 LAVLQDKLRI STKKLEEYET LFKCQEETTQ KLVLEYQARL EEGEERLRRQ ENSBTAP00000032751/1-1196 LAVLQDKLRI STKKLEEYET LFKCQEETTQ KLVLEYQARL EEGEERLRRQ 1101 1150 ENSTTRP00000008878/1-1177 XXXXXIQMKG IISRLMSVEE ELKKDHAEMQ AAVDSKQKII DAQEKRIASL bmy_04586T0/1-743 QEDKDIQMKG IISRLMSVEE ELKKDHAEMQ AAVDSKQKII DAQEKRIASL ENSP00000259371/1-1132 QEDKDIQMKG IISRLMSVEE ELKKDHAEMQ AAVDSKQKII DAQEKRIASL BACU007288/1-886 QEDKDIQMKG IISRLMSVEE ELKKDHAEMQ AAVDSKQKII DAQEKRIASL ENSBTAP00000032751/1-1196 QEDKDIQMKG IISRLMSVEE ELKKDHAEMQ AAVDSKQKII DAQEKRIASL 1151 1200 ENSTTRP00000008878/1-1177 DAANARLMSA LTQLKERYSM QARNGISPTN PTKLQITENG EFRNSSSC bmy_04586T0/1-743 DAANARLMSA LTQLKERYSM QARNGISPTN PTKLQITENG EFRNSSSC ENSP00000259371/1-1132 DAANARLMSA LTQLKE--SM H--------- ---------- -------- BACU007288/1-886 DAANARLMSA LTQLKERYSM QARNGISPTN PTKLQITENG EFRNSSSC ENSBTAP00000032751/1-1196 DAANARLMSA LTQLKERYSM QARNGLSPTN PTKLQITENG EFRNSSNC