KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:20 2014 Check: 00 .. Name: ENSP00000272238/1-427 Len: 561 Check: 7050 Weight: 1.00 Name: ENSBTAP00000032803/1-427 Len: 561 Check: 6510 Weight: 1.00 Name: ENSTTRP00000012487/1-427 Len: 561 Check: 3971 Weight: 1.00 Name: bmy_07146T0/1-491 Len: 561 Check: 3169 Weight: 1.00 Name: BACU020052/1-427 Len: 561 Check: 3750 Weight: 1.00 // 1 50 ENSP00000272238/1-427 MSEFWLISAP GDKENLQALE RMNTVTSKSN LSYNTKFAIP DFKVGTLDSL ENSBTAP00000032803/1-427 MSEFWLISAP RDKENLQALE RMNTVTSKSN LSYNTKFTIP DFKVGTLDSL ENSTTRP00000012487/1-427 MSEFWLISAP GDKENLQALE RMNTVTSKSN LSYNSKFTIP DFKVGTLDSL bmy_07146T0/1-491 ---------- ---------- ---------- ---------- ---------- BACU020052/1-427 MSEFWLISAP GDKENLQALE RMNTVTSKSN LSYNTKFTIP DFKVGTLDSL 51 100 ENSP00000272238/1-427 VGLSDELGKL DTFAESLIRR MAQSVVEVME DSKGKVQEHL LANGVDLTSF ENSBTAP00000032803/1-427 VGLSDELAKL DVFAESLIRR MAQSVVEVME DSKGKVQENL LANGVDLTSF ENSTTRP00000012487/1-427 VGLSDELGKV DIFAESLIKR MAQSVVEVME DAKGKVQENL LANGADLTSF bmy_07146T0/1-491 ---------- ---------- MAQSVVEVME DAKGKVQENL LANGADLMSF BACU020052/1-427 VGLSDELGKL DIFAESLIKR MAQSVVEVME DAKGKVQENL LANGADLTSF 101 150 ENSP00000272238/1-427 VTHFEWDMAK YPVKQPLVSV VDTIAKQLAQ IEMDLKSRTA AYNTLKTNLE ENSBTAP00000032803/1-427 VTHFEWDVAK YPAKQPLVSV VDILAKQLAQ IEIDLKSRTA AYNTLKTNLE ENSTTRP00000012487/1-427 VTHFEWDMAK YPAKQPLVSI ADTLAKQLAQ IETDLKSRTA AYNALKTNLE bmy_07146T0/1-491 VTHFEWDMAK YPAKQPLGSI ADTLAKQLAQ IETDLKSRTA AYSALKTNLE BACU020052/1-427 VTHFEWDMAK YPAKQPLVSI ADTLTKQLAQ IETDLKSRTA AYSALKTNLE 151 200 ENSP00000272238/1-427 NLEKKSMGNL FTRTLSDIVS KEDFVLDSEY LVTLLVIVPK PNYSQWQKTY ENSBTAP00000032803/1-427 NLEKKSMGNL FTRTLSDIVS KEDFVLDSEY LITLLVIVPK PSYVQWQKTY ENSTTRP00000012487/1-427 NLEKKSTGNL FTRTLSDIVS KEDFVLDSEY LITLLVIVPK PSYVQWQKTY bmy_07146T0/1-491 NLEKKSTGNL FTRTLSDIVS KEDFVLDSEY LITLLVIVPK PSYAQWQKTY BACU020052/1-427 NLEKKSTGNL FTRTLSDIVS KEDFVLDSEY LITLLVIVPK PSYAQWQKTY 201 250 ENSP00000272238/1-427 ESLSDMVVPR STKLITEDKE GGLFTVTLFR KVIEDFKTKA KENKFTVREF ENSBTAP00000032803/1-427 ESLSDMVVPR STKLIAEDKE GGLFTVTLFR KVIDDFKTKA KENKFTVREF ENSTTRP00000012487/1-427 ESLSDMVVPR STKLIAEDNE CGLFTVTLFR KVIDDFKTKA KENKFTVREF bmy_07146T0/1-491 ESLSDMVVPR STKLIAEDNE GGLFTVTLFR KVIDDFKTKA KENKFTVREF BACU020052/1-427 ESLSDMVVPR STKLIAEDNE GGLFTVTLFR KVIDDFKTKA KENKFTVREF 251 300 ENSP00000272238/1-427 YYDEKEIERE REEMARLLSD KKQQYQTSCV ALKKGSSTFP DHKVKVTPLG ENSBTAP00000032803/1-427 YYDEKEIKRE REEMTRLLSD KKQQYQTSCV ALKKGSSTFP DHKVKVTPLG ENSTTRP00000012487/1-427 YYDEKEIKRE REEMTRLLSD RKQQYQTSCV ALKKGSSTFP DHQVKVTPLG bmy_07146T0/1-491 YYDEKEIKRE REEMTRLLSD KKQQYQTSCV ALKKGSSTFP DHKVKVTPLG BACU020052/1-427 YYDEKEIKRE REEMTRLLSD KKQQYQTSCV ALKKGSSTFP DHKVKVTPLG 301 350 ENSP00000272238/1-427 NPDRPAAGQT DRERESEGEG EGPLLRWLKV NFSEAFIAWI HIKALRVFVE ENSBTAP00000032803/1-427 NPDRPAAGQS DRERENEGEG EGPLLRWLKV HFSEAFVAWI HIKALRVFVE ENSTTRP00000012487/1-427 NPDRPAAGQN DRERESEGEG EGPLLRWLKV NFSEAFIAWI HIKALRVFVE bmy_07146T0/1-491 NPDRPAAGQN DRERESEGEG EGPLLRWLKV NFSEAFIAWI HIKALRVFVE BACU020052/1-427 NPDRPAAGQN DRERESEGEG EGPLLRWLKV NFSEAFIAWI HIKALRVFVE 351 400 ENSP00000272238/1-427 SVLRYGLPVN FQAVLLQPHK KSSTKRLREV LNSVFRHLDE VAATSILDAS ENSBTAP00000032803/1-427 SVLRYGLPVN FQAVLLQPHK KSCTKRLRQV LNSVFRHLDE VAAASILDAS ENSTTRP00000012487/1-427 SVLRYGLPVN FQAVLLQPHK KSSIKRLREV LNSVFRHLDE VGAASILDAS bmy_07146T0/1-491 SVLRYGLPVN FQAVLLQPHK KSSTKRLREV LNSVFRHLDE VAATSILDPS BACU020052/1-427 SVLRYGLPVN FQAVLLQPHK KSSTKRLREV LNSVFRHLDE VAAASILDAS 401 450 ENSP00000272238/1-427 VEIPGLQLNN QDYFPYVYFH IDL------- ---------- ---------- ENSBTAP00000032803/1-427 VEIPGLQLSN QDYFPYVYFH IDL------- ---------- ---------- ENSTTRP00000012487/1-427 VEIPGLQLSN QDYFPYVYFH IDL------- ---------- ---------- bmy_07146T0/1-491 VEIPGLQLSN QDYFPYVYFH IDLAREEFKY PTEFKFLEKL LTKISYSFTV BACU020052/1-427 VEIPGLQLSN QDYFPYVYFH IDL------- ---------- ---------- 451 500 ENSP00000272238/1-427 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032803/1-427 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012487/1-427 ---------- ---------- ---------- ---------- ---------- bmy_07146T0/1-491 KKCSQSFELS LHLHSNIIQN FPFLNDHIKK LVRKKQPPRT FKQQSEGGKD BACU020052/1-427 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000272238/1-427 ---------- ---------- ---------- -------SLL D--------- ENSBTAP00000032803/1-427 ---------- ---------- ---------- -------SLL D--------- ENSTTRP00000012487/1-427 ---------- ---------- ---------- -------GLL D--------- bmy_07146T0/1-491 ASTAHQFSSK YYLTEYNPIH RLQQFTEFFI VFLRRKSSLL QCFQMTNQCY BACU020052/1-427 ---------- ---------- ---------- -------GLL D--------- 551 600 ENSP00000272238/1-427 ---------- - ENSBTAP00000032803/1-427 ---------- - ENSTTRP00000012487/1-427 ---------- - bmy_07146T0/1-491 FLVKKATGRF I BACU020052/1-427 ---------- -