KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:21 2014 Check: 00 .. Name: bmy_18169T0/1-297 Len: 599 Check: 2269 Weight: 1.00 Name: ENSP00000371155/1-599 Len: 599 Check: 9947 Weight: 1.00 Name: ENSBTAP00000032816/1-586 Len: 599 Check: 4402 Weight: 1.00 Name: BACU018379/1-561 Len: 599 Check: 1444 Weight: 1.00 Name: ENSTTRP00000000541/1-563 Len: 599 Check: 7781 Weight: 1.00 // 1 50 bmy_18169T0/1-297 ---------- ---------- ---------- ---------- ---------- ENSP00000371155/1-599 MSTGFSFGSG TLGSTTVAAG GTSTGGVFSF GTGASSNPSV GLNFGNLGST ENSBTAP00000032816/1-586 MSTGFSFGSS TLGSSTVAAG GSSTGGGFSF GTGTSSNPTV GLNFGTLGST BACU018379/1-561 ---------- ---------- ---------- ------SPSV GLSFGTLGST ENSTTRP00000000541/1-563 ---------- ---------- ---------- ------SPSV GLSLGSLGST 51 100 bmy_18169T0/1-297 ---------- ---------- ---------- ---------- -------MAT ENSP00000371155/1-599 STPATTSAPS SGFGTGLFGS KPATGFTLGG TNTGIATTIT TGLTLGTPAT ENSBTAP00000032816/1-586 ATPATTSA-S GGFGTSLFGS KPATGFTLGG TTTGT----- -------AAT BACU018379/1-561 ATPVTTSAPS GGFGTGLFGS KPATGFTLGG TNTGIATAVT TGLTPSPPAT ENSTTRP00000000541/1-563 AAPVTAPAPS AGFGAGLFGS KPATGFTLGG TNTGIATAVT TGLTPSPPAT 101 150 bmy_18169T0/1-297 WRGRCAGKSL ---------- ---------- ---------L AQQPVASGLF ENSP00000371155/1-599 TSAATTGFSL GFNKPAASAT PFALPITSTS ASGLTLSSAL TSTPAASTGF ENSBTAP00000032816/1-586 TSASTIGFSL GFSKPAASAT PFALPIASTS ASSLTLSSAL TSTPAASTGF BACU018379/1-561 TSASTAGFSL GFSKPAASAT PFALPITSAS AGGLTLSSAL TSTPAASTGF ENSTTRP00000000541/1-563 TSASTAGFSL GFSKPAASAT PFALPITSAS AGGLTLSSAL TSTPAASTGF 151 200 bmy_18169T0/1-297 V--------- ---------- ---------- ---------- -GLGQNALGL ENSP00000371155/1-599 TLNNLGGTTA TTTTASTGLS LGGALAGLGG SLFQSTNTGT SGLGQNALGL ENSBTAP00000032816/1-586 TLNNLSGTAA TTTTASTGLS LGGALTGLGG SLFQGTSTAS SGLGQSALGL BACU018379/1-561 TLSSLSGTAA AATTAPAGLS LGGALTGLGG PLFQSASTAA SGLGQNALGL ENSTTRP00000000541/1-563 TLSSLSGTAA AATTAPAGLS LGGALTGLGG PLFQSASTAA SGLGQNALGL 201 250 bmy_18169T0/1-297 SLGAAAATSS AGNEGLGGLD FSSSSDKKSD KTGTRPE--- ---------- ENSP00000371155/1-599 TLGTTAATST AGNEGLGGID FSSSSDKKSD KTGTRPEDSK ALKDENLPPV ENSBTAP00000032816/1-586 TLGTTAATSA AGNEGLGGID FSSSSDKKSD KTGTRPEDSK ALKDETLPAV BACU018379/1-561 SLGTAAATSS AGNEGLGGLD FSSSSDKKSD KTGTRPEDSK ALKDETLPAV ENSTTRP00000000541/1-563 SLGTAAATSA AGNEGLGGID FSSSSDKKSD KTGTRPEDSK ALKDETLPSV 251 300 bmy_18169T0/1-297 ---------K FVKEQKQVQE EISRMSSKAM LKVQEDIKAL KQLLSLAASG ENSP00000371155/1-599 ICQDVENLQK FVKEQKQVQE EISRMSSKAM LKVQEDIKAL KQLLSLAANG ENSBTAP00000032816/1-586 ICQDVDNLQK FVKEQKQVQE EISRMSSKAM LKVQEDIKAL KQLLSLAASG BACU018379/1-561 ICQDVDSLQK FVKEQKQVQE EISRMSSKAM LKVQEDIKAL KQLLSLAASG ENSTTRP00000000541/1-563 ICQDVDNLQK FVKEQKQVQE EISRMSSKAM LKVQEDIKAL KQLLSLAASG 301 350 bmy_18169T0/1-297 LQRNTLSIDK LKIETAQELK NAEIALRTQK TPPGLQHENT APADYFRILV ENSP00000371155/1-599 IQRNTLNIDK LKIETAQELK NAEIALRTQK TPPGLQHEYA APADYFRILV ENSBTAP00000032816/1-586 LQRNTLNIDK LKIETAQELK NAEIALRTQK TPPGLQHENT APADYFRILV BACU018379/1-561 LQRNTLSIDK LKIETAQELK NAEIALRTQK TPPGLQHENT APAEI--LVA ENSTTRP00000000541/1-563 LQRNTLNIDK LKIETAQELK NAEIALRTQK TPPGLQHENT APADYFRILV 351 400 bmy_18169T0/1-297 QQFEVQLQQY RQQIEELENH LATQANNSHI TPQDLSMAMQ KIYQTFVALA ENSP00000371155/1-599 QQFEVQLQQY RQQIEELENH LATQANNSHI TPQDLSMAMQ KIYQTFVALA ENSBTAP00000032816/1-586 QQFEVQLQQY RQQIEELENH LATQANNSHI TPQDLSMAMQ KIYQTFVALA BACU018379/1-561 QQFEVQLQQY RQQIEELENH LATQANNSHI TPQDLSMAMQ KIYQTFVALA ENSTTRP00000000541/1-563 QQFEVQLQQY RQQIEELENH LATQANNSHI TPQDLSMAMQ KIYQTFVALA 401 450 bmy_18169T0/1-297 AQLQSIHENV KVLKEQYLGY RKMFLGDXVD VFEARRAEAK KWQNAPRVTT ENSP00000371155/1-599 AQLQSIHENV KVLKEQYLGY RKMFLGDAVD VFETRRAEAK KWQNTPRVTT ENSBTAP00000032816/1-586 AQLQSIHENV KVLKEQYLGY RKMFLGDAVD VFEARRAEAK KWQNAPRVTT BACU018379/1-561 AQLQSIHENV KVLKEQYLGY RKMFLGDAVD VFEARRAEAK KWQNAPRVTT ENSTTRP00000000541/1-563 AQLQSIHENV KVLKEQYLGY RKMFLGDAVD VFEARRAEAK KWQNAPRVTT 451 500 bmy_18169T0/1-297 GPTPFSSMPN AAAVAMAATL TQQQQPATGL NA-------- ---------- ENSP00000371155/1-599 GPTPFSTMPN AAAVAMAATL TQQQQPATGP QPSLGVSFGT PFGSGIGTGL ENSBTAP00000032816/1-586 GPTPFSNMPN AAAVAMAATL TQQQQPATGP QPSLGVSFGA PFGSGIGTGL BACU018379/1-561 GPTPFSNMPN AAAVAMAATL TQQQQPATGP QPSLGVSFGA PFGSGIGTGL ENSTTRP00000000541/1-563 GPTPFSNMPN AAAVAMAATL TQQQQPATGP QPSLGVSFGA PFGSGIGTGL 501 550 bmy_18169T0/1-297 ---------- ---------- ---------- ---------- ---------- ENSP00000371155/1-599 QSSGLGSSNL GGFGTSSGFG CSTTGASTFG FGTTNKPSGS LSAGFGSSST ENSBTAP00000032816/1-586 QSSGLGSSNL GGFGASSGFG CSTTGASTFG FGTTNKPSGS LSAGFGSSST BACU018379/1-561 QSSGLGSSNL GGFGASSGFG CSTTGASTFG FGTTNKPSGS LSAGFGSSST ENSTTRP00000000541/1-563 QSSGLGSSNL GGFGASSGFG CSTTGASTFG LGTTNKPSGS LSAGFGSSST 551 600 bmy_18169T0/1-297 --FKL----- ---------- ---------- ---------- --------- ENSP00000371155/1-599 SGFNFSNPGI TASAGLTFGV SNPASAGFGT GGQLLQLKKP PAGNKRGKR ENSBTAP00000032816/1-586 SGFNFSNPGI TASAGLTFGV SNPASAGFGT GGQLLQLKKP PAGNKRGKR BACU018379/1-561 SGFNFSNPGI TASAGLTFGV SNPASAGFGT GGQLLQLKKP PAGNKRGKR ENSTTRP00000000541/1-563 SGFNFSSPGI TASAGLTFGV SNPASAGFGT GGQLLQLKKP PAGNKRGKR