KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:42:24 2014 Check: 00 .. Name: ENSBTAP00000032863/1-887 Len: 1000 Check: 2045 Weight: 1.00 Name: bmy_01048T0/1-798 Len: 1000 Check: 7323 Weight: 1.00 Name: ENSP00000264709/1-912 Len: 1000 Check: 8134 Weight: 1.00 Name: BACU014521/1-932 Len: 1000 Check: 7428 Weight: 1.00 // 1 50 ENSBTAP00000032863/1-887 ---------- ---------- -----EGEEQ EEARAKEERQ EPSTTARKVG bmy_01048T0/1-798 ---------- ---------- ---------- --------MP PPEWSYQWLS ENSP00000264709/1-912 MPAMPSSGPG DTSSSAAER- EEDRKDGEEQ EEPRGKEERQ EPSTTARKVG BACU014521/1-932 ---MPASGPG DASGPAPERG EEERKEGEEQ EEARGKEERQ EPSTAARKVG 51 100 ENSBTAP00000032863/1-887 RPGR-KRKHP PIPKSQCSPI DPEGSLHKGS LWCSPGPVHG LP-GLLQSRC bmy_01048T0/1-798 RQNKLQAKWP PRAAVV---- --------GL VWCLPDPAQS L--------- ENSP00000264709/1-912 RPGR-KRKHP PVESGD-TPK DPAVISKSPS MAQDSGASEL LPNGDLEKRS BACU014521/1-932 RPGR-KRKHP PVESSD-TPK DPAVTSKSPS MAQDSGPSEL LPNGDLEKRS 101 150 ENSBTAP00000032863/1-887 LPRPPPLPSQ GAQQGGTEQA VLGSTRGKPG CRRALDLCQC CTPTAGQ--- bmy_01048T0/1-798 ---------- ---------- ---------- ---------- ---------- ENSP00000264709/1-912 EPQPEEGSPA GGQKGGAPAE GEGAAETLPE ASRAVE-NGC CTPKEGRGAP BACU014521/1-932 EPQPEEGSPA GGQKGGAPAE GEGAAETPPE ASRAVE-NGC CTPKDGRGAP 151 200 ENSBTAP00000032863/1-887 ---------- ---------- -----EGIRK SESNITHRDK SGLQGQPPRG bmy_01048T0/1-798 ---------- ---------- ---------- ---------- ---------- ENSP00000264709/1-912 AE-------- ---------- -----AGKEQ KETNIESMKM EGSRGR---- BACU014521/1-932 AEEVYVLPHI PHFSSPDRGL ARTRRAGISG QESEL-CVLL EGSRGR---- 201 250 ENSBTAP00000032863/1-887 LLGGRGWEKD IIQRTPGWRV SRRAGKLFWV LWW----WLS RWEKNAEKKA bmy_01048T0/1-798 -----GYSG- ---------- ---------- ---------- -----AEKKA ENSP00000264709/1-912 LRGGLGWESS LRQR-PMPRL TFQAGDPYYI SKRKRDEWLA RWKREAEKKA BACU014521/1-932 LRGGLGWESS LRQR-PMPRL TFQAGDPYYI SKRKRDEWLA RWKREAEKKA 251 300 ENSBTAP00000032863/1-887 KVIAVMNAVE ENQGSTESQK VEEASPPAVQ QPTDPASPTV ATTPEPVGAD bmy_01048T0/1-798 KVIAVMNAVE ENQGSTESQK VEEASPPAVQ QPTDPASPTV ATTPEPVGAD ENSP00000264709/1-912 KVIAGMNAVE ENQGPGESQK VEEASPPAVQ QPTDPASPTV ATTPEPVGSD BACU014521/1-932 KVIAVMNAVE ENQGSTESQK VEEASPPAVQ QPTDPASPTV ATTPEPVGAD 301 350 ENSBTAP00000032863/1-887 AGDKNATKAA DDEPEYEDGR GFGIGELVWG KLRGFSWWPG RIVSWWMTGR bmy_01048T0/1-798 AGDKNAAKAA DDEPEYEDGR GFGIGELVWG KLRGFSWWPG RIVSWWMTGR ENSP00000264709/1-912 AGDKNATKAG DDEPEYEDGR GFGIGELVWG KLRGFSWWPG RIVSWWMTGR BACU014521/1-932 AGDKNTAKAA DDEPEYEDGR GFGIGELVWG KLRGFSWWPG RIVSWWMTGR 351 400 ENSBTAP00000032863/1-887 SRAAEGTRWV MWFGDGKFSV VCVEKLMPLS SFCSAFHQAT YNKQPMYRKA bmy_01048T0/1-798 SRAAEGTRWV MWFGDGKFSV VCVEKLMPLS SFCSAFHQAT YNKQPMYRKA ENSP00000264709/1-912 SRAAEGTRWV MWFGDGKFSV VCVEKLMPLS SFCSAFHQAT YNKQPMYRKA BACU014521/1-932 SRAAEGTRWV MWFGDGKFSV VCVEKLMPLS SFCSAFHQAT YNKQPMYRKA 401 450 ENSBTAP00000032863/1-887 IYEVLQVASS RAGKLFPMCH DSDESDTAKA VEVQNKQMIE WALGGFQPSG bmy_01048T0/1-798 IYEVLQVASS RAGKLFPMCH DNDESDTAKA VEVQNKQMIE WALGGFQPSG ENSP00000264709/1-912 IYEVLQVASS RAGKLFPVCH DSDESDTAKA VEVQNKPMIE WALGGFQPSG BACU014521/1-932 IYEVLQVASS RAGKLFPMCH DNDESDTAKA VEVQNKQMIE WALGGFQPSG 451 500 ENSBTAP00000032863/1-887 PKGLEPPEEE KNPYKEVYTD MWVEPEAAAY APPPPAKKPR KSTTEKPKVK bmy_01048T0/1-798 PKGLEPPEEE KNPYKEVYTD MWVEPEAAAY APPPPAKKPR KSTTEKPKVK ENSP00000264709/1-912 PKGLEPPEEE KNPYKEVYTD MWVEPEAAAY APPPPAKKPR KSTAEKPKVK BACU014521/1-932 PKGLEPPEEE KNPYKEVYTD MWVEPEAAAY APPPPAKKPR KSTTEKPKVK 501 550 ENSBTAP00000032863/1-887 EIIDERTRER LVYEVRQKCR NIEDICISCG SLNVTLEHPL FIGGMCQNCK bmy_01048T0/1-798 EIIDERTRER LVYEVRQKCR NIEDICISCG SLNVTLEHPL FIGGMCQNCK ENSP00000264709/1-912 EIIDERTRER LVYEVRQKCR NIEDICISCG SLNVTLEHPL FVGGMCQNCK BACU014521/1-932 EIIDERTRER LVYEVRQKCR NIEDICISCG SLNVTLEHPL FIGGMCQNCK 551 600 ENSBTAP00000032863/1-887 NCFLECAYQY DDDGYQSYCT ICCGGREVLM CGNNNCCRCF CVECVDLLVG bmy_01048T0/1-798 NCFLECAYQY DDDGYQSYCT ICCGGREVLM CGNNNCCRCF CVECVDLLVG ENSP00000264709/1-912 NCFLECAYQY DDDGYQSYCT ICCGGREVLM CGNNNCCRCF CVECVDLLVG BACU014521/1-932 NCFLECAYQY DDDGYQSYCT ICCGGREVLM CGNNNCCRCF CVECVDLLVG 601 650 ENSBTAP00000032863/1-887 PGAAQAAIKE DPWNCYMCGH KGTYGLLRRR DDWPSRLQMF FANNHDQEFD bmy_01048T0/1-798 PGAAQAAIKE DPWNCYMCGH KGTYGLLRRR EDWPSRLQMF FANNHDQEFD ENSP00000264709/1-912 PGAAQAAIKE DPWNCYMCGH KGTYGLLRRR EDWPSRLQMF FANNHDQEFD BACU014521/1-932 PGAAQAAIKE DPWNCYMCGH KGTYGLLRRR EDWPSRLQMF FANNHDQEFD 651 700 ENSBTAP00000032863/1-887 PPKVYPPVPA EKRKPIRVLS LFDGIATGTG LLVLKDLGIQ VDRYIASEVC bmy_01048T0/1-798 PPKVYPPVPA EKRKPIRVLS LFDGIA--TG LLVLKDLGIQ VDRYIASEVC ENSP00000264709/1-912 PPKVYPPVPA EKRKPIRVLS LFDGIA--TG LLVLKDLGIQ VDRYIASEVC BACU014521/1-932 PPKVYPPVPA EKRKPIRVLS LFDGIA--TG LLVLKDLGIQ VDRYIASEVC 701 750 ENSBTAP00000032863/1-887 EDSITVGMVR HQGKIMYVGD VRSVTQKH-- ---------- ---------- bmy_01048T0/1-798 EDSITVGMVR HQGKIMYVGD VRSVTQKHRI GADSSGNWGP GFLGLAGFRA ENSP00000264709/1-912 EDSITVGMVR HQGKIMYVGD VRSVTQKH-- ---------- ---------- BACU014521/1-932 EDSITVGMVR HQGKIMYVGD VRSVTQKH-- ---------- ---------- 751 800 ENSBTAP00000032863/1-887 ---------- ---------- ---------I QEWGPFDLVI GGSPCNDLSI bmy_01048T0/1-798 LLSGALSFLS PFLPLSPDIR PITLPLSSQI QEWGPFDLVI GGSPCNDLSI ENSP00000264709/1-912 ---------- ---------- ---------I QEWGPFDLVI GGSPCNDLSI BACU014521/1-932 ---------- ---------- ---------I QEWGPFDLVI GGSPCNDLSI 801 850 ENSBTAP00000032863/1-887 VNPARKGLYE GTGRLFFEFY RLLHDARPKE GDDRPFFWLF ENVVAMGVSD bmy_01048T0/1-798 VNPARKGLYE GTGRLFFEFY RLLHDARPKE GDDRPFFWLF ENVVAMGVSD ENSP00000264709/1-912 VNPARKGLYE GTGRLFFEFY RLLHDARPKE GDDRPFFWLF ENVVAMGVSD BACU014521/1-932 VNPARKGLYE GTGRLFFEFY RLLHDARPKE GDDRPFFWLF ENVVAMGVSD 851 900 ENSBTAP00000032863/1-887 KRDISRFLES NPVMIDAKEV SAAHRARYFW GNLPGMNRPL ASTVNDKLEL bmy_01048T0/1-798 KRDISRFLES NPVMIDAKEV SAAHRARYFW GNLPGMNRPL ASTVNDKLEL ENSP00000264709/1-912 KRDISRFLES NPVMIDAKEV SAAHRARYFW GNLPGMNRPL ASTVNDKLEL BACU014521/1-932 KRDISRFLES NPVMIDAKEV SAAHRARYFW GNLPGMNRPL ASTVNDKLEL 901 950 ENSBTAP00000032863/1-887 QECLEHGRIA KFSKVRTITT RSNSIKQGKD QHFPVFMNEK EDILWCTEME bmy_01048T0/1-798 QECLEHGRIA KFSKVRTITT RSNSIKQGKD QHFPVFMNEK EDILWCTEME ENSP00000264709/1-912 QECLEHGRIA KFSKVRTITT RSNSIKQGKD QHFPVFMNEK EDILWCTEME BACU014521/1-932 QECLEHGRIA KFSKVRTITT RSNSIKQGKD QHFPVFMNEK EDILWCTEME 951 1000 ENSBTAP00000032863/1-887 RVFGFPVHYT DVSNMSRLAR QRLLGRSWSV PVIRHLFAPL KEYFACV--- bmy_01048T0/1-798 RVFGFPVHYT DVSNMSRLAR QRLLGRSWSV PVIRHLFAPL KEYFACVLIR ENSP00000264709/1-912 RVFGFPVHYT DVSNMSRLAR QRLLGRSWSV PVIRHLFAPL KEYFACV--- BACU014521/1-932 RVFGFPVHYT DVSNMSRLAR QRLLGRSWSV PVIRHLFAPL KEYFACV---