KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:25 2014 Check: 00 .. Name: ENSP00000260600/1-1144 Len: 1179 Check: 7812 Weight: 1.00 Name: ENSBTAP00000032877/1-1151 Len: 1179 Check: 3286 Weight: 1.00 Name: ENSTTRP00000014368/1-1141 Len: 1179 Check: 3638 Weight: 1.00 Name: bmy_05477T0/1-854 Len: 1179 Check: 6733 Weight: 1.00 Name: BACU014517/1-966 Len: 1179 Check: 2525 Weight: 1.00 // 1 50 ENSP00000260600/1-1144 ------MPRN QGFSEPEYSA EYSAEYSVSL PSDPDRGVGR THEISVRNSG ENSBTAP00000032877/1-1151 KQIPARMPRT QGFSEPEYSA EYSAEYSVSL PSDPDRGVGR THEISVRNSG ENSTTRP00000014368/1-1141 ------MPRT QGFSDPEYSA EYSAEYSVSL PSDPDRRVGR THEISVRNSG bmy_05477T0/1-854 ---------- ---------- ---------- ---------- ---------- BACU014517/1-966 ---------- ---------- ---------- -MGPSQVKDR SRQQTAPGN- 51 100 ENSP00000260600/1-1144 SCLCLPRFMR LTFVPESLEN LYQTYFKRQR HETLLVLVVF AALFDCYVVV ENSBTAP00000032877/1-1151 SCLCLPRFMR LTFVPESLEN LYQTYFKRQR HETLLVLVVF AALFDCYVVV ENSTTRP00000014368/1-1141 SCLCLPRFMR LTFVPESLEN LYQTYFKRQR HETLLVLVVF AALFDCYVVV bmy_05477T0/1-854 ---------- ---------- ---------- ---------- ---------- BACU014517/1-966 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000260600/1-1144 MCAVVFSSDK LASLAVAGIG LVLDIILFVL CKKGLLPDRV TRRVLPYVLW ENSBTAP00000032877/1-1151 MCAVVFSGDK LAPLAVAGVG LVLDIILFVL CKKGLLPNRV TRRVVPYLLW ENSTTRP00000014368/1-1141 MCAVVFSSDK LAPLAVAGVG LVLDILLFVL CKKGLLPNRV TRKVVPYVLW bmy_05477T0/1-854 ---------- ---------- ---------- ---------- ---------- BACU014517/1-966 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000260600/1-1144 LLITAQIFSY LGLNFARAHA ASDTVGWQVF FVFSFFITLP LSLSPIVIIS ENSBTAP00000032877/1-1151 LLISAQVFSY LGLNFSRAHA ASDTVGWQAF FVFSFFITLP LSLSPIVIIS ENSTTRP00000014368/1-1141 LLITAQVFSY LGLNFSRAHA ASDTVGWQAF FVFSFFITLP LSLSPIVIIS bmy_05477T0/1-854 ---------- ---------- ---------- ---------- ---------- BACU014517/1-966 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000260600/1-1144 VVSCVVHTLV LGVTVAQQQQ EELKGMQLLR EILANVFLYL CAIAVGIMSY ENSBTAP00000032877/1-1151 VVSCVVHTLV LGVTVAQQQQ DGLKGVQLLR EILANVFLYL CAIVVGIMSY ENSTTRP00000014368/1-1141 VVSCVVHTLV LGVTVAQQQR DGLKGMQLLR EILANVFLYL CAIVVGIMSY bmy_05477T0/1-854 ---------- ---------- ---------- ---------- ---------- BACU014517/1-966 ---------- ---------- ---------- QILANVFLYL CAIVVGIMSY 251 300 ENSP00000260600/1-1144 YMADRKHRKA FLEARQSLEV KMNLEEQSQQ QENLMLSILP KHVADEMLKD ENSBTAP00000032877/1-1151 YMADRKHRKA FLEARQSLEV KMNLEEQSQQ QENLMLSILP KHVADEMLKD ENSTTRP00000014368/1-1141 YMADRKHRKA FLEARQSLEV KMNLEEQSQQ QENLMLSILP KHVADEMLKD bmy_05477T0/1-854 ---------- ---------- ---------- ----MLSILP KHVADEMLKD BACU014517/1-966 YMADRKHRKA FLEARQSLEV KMNLEEQSQQ QENLMLSILP KHVADEMLKD 301 350 ENSP00000260600/1-1144 MKKDESQKDQ QQFNTMYMYR HENVSILFAD IVGFTQLSSA CSAQELVKLL ENSBTAP00000032877/1-1151 MKKDESQKDQ QQFNTMYMYR HENVSILFAD IVGFTQLSSA CSAQELVKLL ENSTTRP00000014368/1-1141 MKKDESQKDQ QQFNTMYMYR HENVSILFAD IVGFTQLSSA CSAQELVKLL bmy_05477T0/1-854 MKKDESQKDQ QQFNTMYMYR HENVSILFAD IVGFTQLSSA CSAQELVKLL BACU014517/1-966 MKKDESQKDQ QQFNTMYMYR HENVSILFAD IVGFTQLSSA CSAQELVKLL 351 400 ENSP00000260600/1-1144 NELFARFDKL AA-------- ---------- ---------- KYHQLRIKIL ENSBTAP00000032877/1-1151 NELFARFDKL AA-------- ---------- ---------- KYHQLRIKIL ENSTTRP00000014368/1-1141 NELFARFDKL AA-------- ---------- ---------- KYHQLRIKIL bmy_05477T0/1-854 NELFARFDKL AA-------- ---------- ---------- KYHQLRIKIL BACU014517/1-966 NELFARFDKL AADFRPPIRP LLSLPLSPPC RGGTQDLPFQ KYHQLRIKIL 401 450 ENSP00000260600/1-1144 GDCYYCICGL PDYREDHAVC SILMGLAMVE AISYVREKTK TGVDMRVGVH ENSBTAP00000032877/1-1151 GDCYYCICGL PDYREDHAVC SILMGLAMVE AISYVREKTK TGVDMRVGVH ENSTTRP00000014368/1-1141 GDCYYCICGL PDYREDHAVC SILMGLAMVE AISYVREKTK TGVDMRVGVH bmy_05477T0/1-854 GDCYYCICGL PDYREDHAVC SILMGLAMVE AISYVREKTK TGVDMRVGVH BACU014517/1-966 GDCYYCICGL PDYREDHAVC SILMGLAMVE AISYVREKTK TGVDMRVGVH 451 500 ENSP00000260600/1-1144 TGTVLGGVLG QKRWQYDVWS TDVTVANKME AGGIPGRVHI SQSTMDCLKG ENSBTAP00000032877/1-1151 TGTVLGGVLG QKRWQYDVWS TDVTVANKME AGGIPGRVHI SQSTMDCLKG ENSTTRP00000014368/1-1141 TGTVLGGVLG QKRWQYDVWS TDVTVANKME AGGIPGRVHI SQSTMDCLKG bmy_05477T0/1-854 TGTVLGGVLG QKRWQYDVWS TDVTVANKME AGGIPGRVHI SQSTMDCLKG BACU014517/1-966 TGTVLGGVLG QKRWQYDVWS TDVTVANKME AGGIPGRVHI SQSTMDCLKG 501 550 ENSP00000260600/1-1144 EFDVEPGDGG SRCDYLEEKG IETYLIIASK PEVKKTATQN GLNGSALPNG ENSBTAP00000032877/1-1151 EFDVEPGEGG SRCDYLEEKG IETYLIIASK PEVKKTAAQN GLNGSALLNG ENSTTRP00000014368/1-1141 EFDVEPGDGG SRCDYLDEKG IETYLIIASK PEVKRTAAQN GLSGSALLNG bmy_05477T0/1-854 EFDVEPGDGG SRCDYLDEKG IETYLIIASK PEVKRTAAQN GLSGSALPNG BACU014517/1-966 EFDVEPGDGG SRCDYLDEKG IETYLIIASK PEVKRTAAQN GLSGSALPNG 551 600 ENSP00000260600/1-1144 APASSKSSSP ALIETKEPNG SAHSSGSTSE KPEEQDAQAD NPSFPNPRRR ENSBTAP00000032877/1-1151 APPSSKPSSP ALIETKESNG SIHTSGSVSE EPEEQDAQAD NPSFPNPRRR ENSTTRP00000014368/1-1141 APPSSKPGSP ALIETKEPNG SIHTSGSTSE EP---DAQAD NPSFPNPRRR bmy_05477T0/1-854 APPSSKPGSP ALIETKEPNG SIHTSGSTSE GPEEPDAQAD NPSFPNPRRR BACU014517/1-966 APPSSKPGSP ALIETKEPDG SIHTSGSTSE GPEEPDAQAD NPSFPNPRRR 601 650 ENSP00000260600/1-1144 LRLQDLADRV VDASEDEHEL NQLLNEALLE RESAQVVKKR NTFLLSMRFM ENSBTAP00000032877/1-1151 LRLQDLADRV VDASEDEHEL NQLLNEALLE RESAQVVKKR NTFLLSMRFM ENSTTRP00000014368/1-1141 LRIQDLADRV VDASEDEHEL NQLLNEALLE RESAQVVKKR NTFFLSMRFM bmy_05477T0/1-854 LRLQDLADRV VDASEDEHEL NQLLNEALLE RESAQVVKKR NTFLLSMRFM BACU014517/1-966 LRLQDLADRV VDASEDEHEL NQLLNEALLE RESAQVVKKR NTFLLSMRFM 651 700 ENSP00000260600/1-1144 DPEMETRYSV EKEKQSGAAF SCSCVVLLCT ALVEILIDPW LMTNYVTFMV ENSBTAP00000032877/1-1151 DPEMETRYSV EKEKQSGAAF SCSCVVLLCT AVVEILIDPW LMTNYVTFVV ENSTTRP00000014368/1-1141 DREMETRYSV EKEKQSGAAF SCSCVVLLCT ALVEILIDPW LMTNYVTFVV bmy_05477T0/1-854 DREMETRYSV EKEKQSGAAF SCSCVVLLCT ALVEILIDPW LMTNYVTFVV BACU014517/1-966 DREMETRYSV EKEKQSGAAF SCSCVVLLCT ALVEILIDPW LMTNYVTFVV 701 750 ENSP00000260600/1-1144 GEILLLILTI CSLAAIFPRA FPKKLVAFST WIDRTRWARN TWAMLAIFIL ENSBTAP00000032877/1-1151 GEALLLILTI CSLAAIFPRA FPKKLVAFST WIDRTRWARN TWAMLAIFIL ENSTTRP00000014368/1-1141 GEVLLLTLTV CSLAAIFPRA FPKKIVAFST WIDRTRWARN TWAMLAIFIL bmy_05477T0/1-854 GEVLLLLLTV CSLAAIFPRA FPKKIVAFST WIDRTRWARN TWAMLAIFIL BACU014517/1-966 GEVLLLLLTV CSLAAIFPRA FPKKIVAFST WIDRTRWARN TWAMLAIFIL 751 800 ENSP00000260600/1-1144 VMANVVDMLS CLQYYTGPSN ATAGMETEGS CLENPKYYNY VAVLSLIATI ENSBTAP00000032877/1-1151 VMANVVDMLS CLQYYTGPTN GTAEMQVEDG CVENPKYYNY VAVLSLIATI ENSTTRP00000014368/1-1141 VMANVVDMLS CLQYYMGPTN GTSRVQIEDG CVENPKYYNY VAVLSLIATI bmy_05477T0/1-854 VMANVVDMLS CLQYYVGPTN GTSGVQIEDG CVENPKYYNY VAVLSLIATI BACU014517/1-966 VMANVVDMLS CLQYYMGPTN GTSGVQIEDG CVENPKYYNY VAVLSLIATI 801 850 ENSP00000260600/1-1144 MLVQVSHMVK LTLMLLVAGA VATINLYAWR PVFDEYDHKR FREHDLPMVA ENSBTAP00000032877/1-1151 MLVQVSHMVK LTLMLLIAGA VAVINIYAWC PIFDDYDRKR FQQHDFPMVA ENSTTRP00000014368/1-1141 MLVQVSHMVK LTLMLLIAGA VAVINIYAWR PIFDEYDRRR FQEHDFPMVA bmy_05477T0/1-854 MLVQVSHMVK LTLMLLIAGA VAVINIYAWR PIFDEYDRRR FQEHDFPMVA BACU014517/1-966 MLVQVSHMVK LTLMLLIAGA VAVINIYAWR PIFDEYDRRR FQEHDFPMVA 851 900 ENSP00000260600/1-1144 LEQMQGF-NP GLNGTDRLPL VPSKYSMTVM VFLMMLSFYY FSRHVEKLAR ENSBTAP00000032877/1-1151 LEKMQVFSSS GLNGTDRLPL VPSKYSMTVM IFVMMLSFYY FSRHVEKLAR ENSTTRP00000014368/1-1141 LEKMQVLSSP GLNGTDRLPL VPSKCSMTVM IFVMMLSFYY FSRHVEKLAR bmy_05477T0/1-854 LEKMQVLSSP GLNGTDRLPL VPSKCSMTVM IFVMMLSFYY FSRH------ BACU014517/1-966 LEKMQVLSSP GLNGTDRLPL VPSKCSMTVM IFVMMLSFYY FSRHVEKLAR 901 950 ENSP00000260600/1-1144 TLFLWKIEVH DQKERVYEMR RWNEALVTNM LPEHVARHFL GSKKRDEELY ENSBTAP00000032877/1-1151 TLFLWKIEVH DQKERVYEMR RWNEALVTNM LPEHVARHFL GSKKRDEELY ENSTTRP00000014368/1-1141 TLFLWKIEVH DQKERVYEMR RWNEALVTNM LPEHVARHFL GSKKRDEELY bmy_05477T0/1-854 ------IEVH DQKERVYEMR RWNEALVTNM LPEHVARHFL GSKKRDEELY BACU014517/1-966 TLFLWKIEVH DQKERVYEMR RWNEALVTNM LPEHVARHFL GSKKRDEELY 951 1000 ENSP00000260600/1-1144 SQTYDEIGVM FASLPNFADF YTEESINNGG IECLRFLNEI ISDFDSLLDN ENSBTAP00000032877/1-1151 SQSYDEIGVM FASLPNFADF YTEESINNGG IECLRFLNEI ISDFDSLLDN ENSTTRP00000014368/1-1141 SQSYDEIGVM FASLPNFADF YTEESINNGG IECLRFLNEI ISDFDSLLDN bmy_05477T0/1-854 SQSYDEIGVM FASLPNFADF YTEESINNGG IECLRFLNEI ISDFDSLLDN BACU014517/1-966 SQSYDEIGVM FASLPNFADF YTEESINNGG IECLRFLNEI ISDFDSLLDN 1001 1050 ENSP00000260600/1-1144 PKFRVITKIK TIGSTYMAAS GVTPDVNTNG FASSNKEDKS ERERWQHLAD ENSBTAP00000032877/1-1151 PKFRVITKIK TIGSTYMAAS GVTPDVNTNG FTSSNKDEKS DKERWQHLAD ENSTTRP00000014368/1-1141 PKFRVITKIK TIGSTYMAAS GVTPDVNTNG FTSSNKE-RS DKERWQHLAD bmy_05477T0/1-854 PKFRVITKIK TIGSTYMAAS GVTPDVNTNG FTSSNKE-KS DKERWQHLAD BACU014517/1-966 PKFRVITKIK TIGSTYMAAS GVTPDVNTNG FTSSNKE-KS DKERWQHLAD 1051 1100 ENSP00000260600/1-1144 LADFALAMKD TLTNINNQSF NNFMLRIGMN KGGVLAGVIG ARKPHYDIWG ENSBTAP00000032877/1-1151 LADFALAMKD TLTNINNQSF NNFMLRIGMN KGGVLAGVIG ARKPHYDIWG ENSTTRP00000014368/1-1141 LADFALAMKD TLTNINNQSF NNFMLRIGMN KGGVLAGVIG ARKPHYDIWG bmy_05477T0/1-854 LADFALAMKD TLTNINNQSF NNFMLRIGMN KGGVLAGVIG ARKPHYDIWG BACU014517/1-966 LADFALAMKD TLTNINNQSF NNFMLRIGMN KGGVLAGVIG ARKPHYDIWG 1101 1150 ENSP00000260600/1-1144 NTVNVASRME STGVMGNIQV VEETQVILRE YGFRFVRRGP IFVKGKGELL ENSBTAP00000032877/1-1151 NTVNVASRME STGVMGNIQV VEETQVILRE YGFRFVRRGP IFVKGKGELL ENSTTRP00000014368/1-1141 NTVNVASRME STGVMGNIQV VEETQVILRE YGFRFVRRGP IFVKGKGELL bmy_05477T0/1-854 NTVNVASRME STGVMGNIQV VEETQVILRE YGFRFVRRGP IFVKGKGELL BACU014517/1-966 NTVNVASRME STGVMGNIQV VEETQVILRE YGFRFVRRGP IFVKGKGELL 1151 1200 ENSP00000260600/1-1144 TFFLKGRDKL ATFPNGPSVT LPHQVVDNS ENSBTAP00000032877/1-1151 TFFLKGRDKL ATFPNGASIT LPHQVVDNS ENSTTRP00000014368/1-1141 TFFLKGREKP ATFPNGSSVT LPHQVVDNS bmy_05477T0/1-854 TFFLKGREKP ATFPNGSSVT LPHQVVDNS BACU014517/1-966 TFFLKGREKP ATFPNGSSVT LPHQVVDNS