KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:26 2014 Check: 00 .. Name: ENSP00000359607/1-581 Len: 848 Check: 2631 Weight: 1.00 Name: ENSBTAP00000032879/1-581 Len: 848 Check: 6245 Weight: 1.00 Name: bmy_10559T0/1-451 Len: 848 Check: 8248 Weight: 1.00 Name: BACU012420/1-848 Len: 848 Check: 4464 Weight: 1.00 Name: ENSTTRP00000005601/1-581 Len: 848 Check: 1746 Weight: 1.00 // 1 50 ENSP00000359607/1-581 MAASGRGLCK AVAASPFPAW RRDNTEARGG LKPEYDAVVI GAGHNGLVAA ENSBTAP00000032879/1-581 MTTCGRGLRR AVGASPRPTW RRALLDTRGR LKPEYDAVVV GAGHNGLVAA bmy_10559T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU012420/1-848 MAACGRGLCR AVGASPRPAW RRAHSDARGR LKPEYDAVVI GAGHNGLVAA ENSTTRP00000005601/1-581 MAACGRGLRR AVAASPHPAL RRAHSDARGR LKPEYDAVVI GAGHNGLVAA 51 100 ENSP00000359607/1-581 AYLQRLGVNT AVFERRHVIG GAAVTEEIIP GFKFSRASYL LSLLRPQIYT ENSBTAP00000032879/1-581 AYLQRFGVNT AVFERRHVIG GAAVTEEIVP GFKFSRASYL LSLLRPQIYS bmy_10559T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU012420/1-848 AYLQRLGVNT AVFERRHVIG GAAVTEEIIP GFKFSRASYL LSLLRPQIYA ENSTTRP00000005601/1-581 AYLQRLGVNT AVFERRHVIG GAAVTEEIIP GFKFSRASYL LSLLRPQIYT 101 150 ENSP00000359607/1-581 DLELKKHGLR LHLRNPYSFT PMLEEGAGSK VPRCLLLGTD MAENQKQIAQ ENSBTAP00000032879/1-581 ELELKKHGLR LHLRNPYSFT PMLEEGTGGK VPRSLLLGTD MVENQKQIAQ bmy_10559T0/1-451 ---MQKHGLR LHLRNPHSFT PMLEEGTAGK VPRSLLLGTD MAENQKQIAQ BACU012420/1-848 DLELKKHGLR LHLRNPHSFT PMLEEGTAGK VPRSLLLGTD MAENQKQIAQ ENSTTRP00000005601/1-581 DLELKKHGMR LHLRNPHSFT PMLEEGTAGK VPRSLLLGTD MAENQKQIAQ 151 200 ENSP00000359607/1-581 FSQKDAQVFP KYEEFMHRLA LAIDPLLDAA PVDMAAFQHG SLLQRMRSLS ENSBTAP00000032879/1-581 FSKKDAQAFP KYEAFMDRLA LAIDPLLDSA PVDLEAFQRG SLLQRLKSLS bmy_10559T0/1-451 FSRKDAQAFP KYEAFMNRLA LAIDPLLDAA PVDMEAFQRG SLLQRLKSLS BACU012420/1-848 FSRKDAQAFP KYEAFMNRLA LAIDPLLDAA PVDMEAFQRG SLLQRLKSLS ENSTTRP00000005601/1-581 FSRKDAQAFP KYEAFMNRLA LAIDPLLDAA PVDMEAFQRG SLLQRLKSLS 201 250 ENSP00000359607/1-581 TLKPLLKAGR ILGAQLPRYY EVLTAPITKV LDQWFESEPL KATLATDAVI ENSBTAP00000032879/1-581 TLKPLWQAGC ILGAQLPQYY QVLTAPAAKV LDQWFESEPL KATLATDAVI bmy_10559T0/1-451 TLKPLLQAAL LLAVLLSQ-- ---------V LDQWFESEPL KATLATDAVI BACU012420/1-848 TLKPLLQAGR ILGAQLPQYY QVLTAPAVKV LDQWFESEPL KATLATDAVI ENSTTRP00000005601/1-581 TLKPLLQAGR ILGAQLPQYY QVLTAPAVKV LDQWFESEPL KATLATDSVI 251 300 ENSP00000359607/1-581 GAMTSPHTPG SGYVLLHHVM GGLEGMQGAW GYVQGGMGAL SDAIASSATT ENSBTAP00000032879/1-581 GAMTNPYIPG SGYVLLHHVM GSLEGVRGAW GYVQGGMGAL SDAIASSATA bmy_10559T0/1-451 GAMTSPYIPG SGYVLLHHVM GGLEGMRGAW GYVQGGMGAL SDAIASSATA BACU012420/1-848 GAMTSPYIPG SGYVLLHHVM GGLEGMRGAW GYVQGGMGAL SDAIASSATA ENSTTRP00000005601/1-581 GAMTSPYIPG SGYVLLHHMM GGLEGMRGAW GYVQGGMGAL SDAIASSATA 301 350 ENSP00000359607/1-581 HGASIFTEKT VAKVQVNSEG CVQGVVLEDG TEVRSKMVLS NTSPQITFLK ENSBTAP00000032879/1-581 HGVSIFTEKT VAKVQVSSGG RVQGVVLQDG SEVRSKVVLS NASPQITFLK bmy_10559T0/1-451 HGASIFTEKT VAKVQVSSGG RVQGVVLQDG SEVRSKVVLS NASPQITFLK BACU012420/1-848 HGASVFTEKT VAKVQVSSGG RVQGVVLQDG SEVRSKVVLS NASPQITFLK ENSTTRP00000005601/1-581 HGASIFTEKT VAKVQVSSGG HVQGVVLQDG SEVRSKVVLS SASPQITFLK 351 400 ENSP00000359607/1-581 LTPQEWLPEE FLERISQLDT RSPVTKINVA VDRLPSFLAA PNAPRGQPLP ENSBTAP00000032879/1-581 LTPQEWLPEE FVARIAQLDT KSPVTKINVA VNRLPDFLAA PNTPGDQPLP bmy_10559T0/1-451 LTPQEWLPEE FVERISQLDT QSPVTKINVA VDRLPDFLAA PNAPRGQPLP BACU012420/1-848 LTPQEWLPEE FVERISQLDT QSPVTKINVA VDRLPDFLAA PNAPRGQPLP ENSTTRP00000005601/1-581 LTPQEWLPEE FVERISQLDT QSPVTKINVA VDRLPDFLAA PNAPRGQPLP 401 450 ENSP00000359607/1-581 HHQCSIHLNC EDTLLLHQAF EDAMDGLPSH RPVIELCIPS SLDPTLAPPG ENSBTAP00000032879/1-581 HHQCSIHLNC EDTLLVHQAF EDTLDGLPSK RPLIELCIPS SLDPTLAPPG bmy_10559T0/1-451 HHQCSIHLNC EDTLLLHRAF EDAMDGLPSH RPMIELCIPS SLDPTLAPPG BACU012420/1-848 HHQCSIHLNC EDTLLLHRAF EDAMDGLPSH RPMIELCIPS SLDPTLAPPG ENSTTRP00000005601/1-581 HHQCSIHLNC EDTLLLHQAF EDAMDGLPSH RPMIELCIPS SLDPTLAPPG 451 500 ENSP00000359607/1-581 CHVVSLFTQY MPYTLAGGKA WDEQERDAYA DRVFDCIEVY APGFKDSVVG ENSBTAP00000032879/1-581 CHVVSLFTQY TPYTLAGGKA WDEQQRNTYA DRVFDCIEAY APGFKGSVVG bmy_10559T0/1-451 CHVISLFTQY TPYTLAAGKA WDEQERNAHA DRAF----SR KRGQRQR--- BACU012420/1-848 CHVISLFTQY TPYTLAAGKA WDEQERNAHA DRVCDCIEAY APGFKRSVVG ENSTTRP00000005601/1-581 CHVISLFTQY TPYTLAAGKA WDEQERNAHA DRVCDCIEAY APGFKGSVVG 501 550 ENSP00000359607/1-581 RDILTPPDLE RIFGLPGGNI FHCAMSLDQL YFARPVPLHS GYRCPLQGLY ENSBTAP00000032879/1-581 RDILTPPDLE RVFGLPGGNI FHCAMSLDQL YFARPVPLHS SYCSPLRGLY bmy_10559T0/1-451 ------PQQR ---GDRDTNI FHCAMALDQL YFARPVPLHS SYRCPVRGLY BACU012420/1-848 RDILTPPDLE RVFGLPGGNI FHCAMALDQL YFARPVPLHS SYRCPVRGLY ENSTTRP00000005601/1-581 RDILTPPDLE RVFGLPGGNI FHCAMALDQL YFARPVPLHS SYRCPLRGLY 551 600 ENSP00000359607/1-581 LCGSGAHPG- ---------- GG-------- ---------- ---------- ENSBTAP00000032879/1-581 LCGSGAHPG- ---------- GG-------- ---------- ---------- bmy_10559T0/1-451 LCGSGAHPG- ---------- GG-------- ---------- ---------- BACU012420/1-848 LCGSGAHPGP LYQLIEGLPW GGPVYCRHIS GKLYKKGHNS PVPYKVTHRG ENSTTRP00000005601/1-581 LCGSGAHPG- ---------- GG-------- ---------- ---------- 601 650 ENSP00000359607/1-581 ---------- ---------- -------VMG AAG------- ---------- ENSBTAP00000032879/1-581 ---------- ---------- -------VMG AAG------- ---------- bmy_10559T0/1-451 ---------- ---------- -------VMG AAG------- ---------- BACU012420/1-848 LGRSSACLSG RQNRQNQSEC EKSPVTSSLN ANGSLLTPTT RMVKDPGQGT ENSTTRP00000005601/1-581 ---------- ---------- -------VMG AAG------- ---------- 651 700 ENSP00000359607/1-581 ---------- ---------- -----RNAAH VAFR------ ---------- ENSBTAP00000032879/1-581 ---------- ---------- -----RNAAH VVFR------ ---------- bmy_10559T0/1-451 ---------- ---------- -----RNAAH VVFT------ ---------- BACU012420/1-848 FIVEALVSRP CFLEMFVKPA DLRFIKDGDR IAIRTQEVSA VTQVFTWGIL ENSTTRP00000005601/1-581 ---------- ---------- -----RNAAH VVFR------ ---------- 701 750 ENSP00000359607/1-581 ---------- ---------- ---DLKSM-- ---------- ---------- ENSBTAP00000032879/1-581 ---------- ---------- ---DLRSM-- ---------- ---------- bmy_10559T0/1-451 ---------- ---------- ---DLRSM-- ---------- ---------- BACU012420/1-848 VQGAEPPRTV QCEAGTAWKM AEEDLKSVQN VSEMMMFSTE KSQDAVLRAH ENSTTRP00000005601/1-581 ---------- ---------- ---DLRSM-- ---------- ---------- 751 800 ENSP00000359607/1-581 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032879/1-581 ---------- ---------- ---------- ---------- ---------- bmy_10559T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU012420/1-848 LPRQVHLEGR VAIICIVLTK RPCILPEAIQ RIRSGSGSAE MLYLLSGSLD ENSTTRP00000005601/1-581 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000359607/1-581 ---------- ---------- ---------- ---------- -------- ENSBTAP00000032879/1-581 ---------- ---------- ---------- ---------- -------- bmy_10559T0/1-451 ---------- ---------- ---------- ---------- -------- BACU012420/1-848 EMQPPPLSRD PQDRSLSPRA PSMGFYIYTC SFTLPACPSP SPSGHLLI ENSTTRP00000005601/1-581 ---------- ---------- ---------- ---------- --------