KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:27 2014 Check: 00 .. Name: ENSP00000310208/1-635 Len: 677 Check: 3062 Weight: 1.00 Name: ENSBTAP00000032888/1-638 Len: 677 Check: 6201 Weight: 1.00 Name: ENSTTRP00000011868/1-638 Len: 677 Check: 8864 Weight: 1.00 Name: bmy_01076T0/1-677 Len: 677 Check: 9149 Weight: 1.00 Name: BACU014548/1-659 Len: 677 Check: 1973 Weight: 1.00 // 1 50 ENSP00000310208/1-635 MSVGVSTSAP LSPTSGTSVG MSTFSIMDYV VFVLLLVLSL AIGLYHACRG ENSBTAP00000032888/1-638 MSMGLSTATP LPPASDTDVV TSTFSLVDYV VFVLLLVLSL AIGLYHAYRG ENSTTRP00000011868/1-638 MSVAVSTSAP LPPASDTNMV TSTFSLVDYV VFVLLLVLSL AIGLYHAYRG bmy_01076T0/1-677 MSVAVSTSAP LPPASDTNMV TSTFSPVDYV VFVLLLVLSL AIGLYHAYRG BACU014548/1-659 ---------- --------MV TSTFSLVDYV VFVLLLVLSL AIGLYHAYRG 51 100 ENSP00000310208/1-635 WGRHTVGELL MADRKMGCLP VALSLLATFQ SAVAILGVPS EIYRFGTQYW ENSBTAP00000032888/1-638 WGRHSIGQLL LADRKMGCLP VALSLLATFQ SAVAILGVPS EIYRFGTQYW ENSTTRP00000011868/1-638 WGRHTIGQLL LADRKMGCFP VALSLLATFQ SAVAILGVPS EIYRFGTQYW bmy_01076T0/1-677 WGRHTIGQLL LADRKMGCFP VALSLLATFQ SAVAILGVPS EIYRFGTQYW BACU014548/1-659 WGRHTIGQLL LADRKMGCFP VALSLLATFQ SAVAILGVPS EIYRFGTQYW 101 150 ENSP00000310208/1-635 FLGCCYFLGL LIPAHIFIPV FYRLHLTSAY EYLELRFNKT VRVCGTVTFI ENSBTAP00000032888/1-638 FLGCCYFLGL LIPAHVFIPI FYRLHITSAY EYLELRFNKA VRVCGTVTFI ENSTTRP00000011868/1-638 FLGCSYFLGL LIPAHVFIPI FYRLHLTSAY EYLELRFNKA VRVCGTVTFI bmy_01076T0/1-677 FLGCSYFLGL LIPAHVFIPI FYRLHLTSAY EYLELRFNKA VRVCGTVTFI BACU014548/1-659 FLGCSYFLGL LIPAHVFIPI FYRLHLTSAY EYLELRFNKA VRVCGTVTFV 151 200 ENSP00000310208/1-635 FQM------- ---------- ---------- ---------- --VIYMGVVL ENSBTAP00000032888/1-638 FQM------- ---------- ---------- ---------- --VIYMGVVL ENSTTRP00000011868/1-638 FQM------- ---------- ---------- ---------- --VIYMGVVL bmy_01076T0/1-677 FQMTSKIEIP ASPQRQPASH SFRFRHRYYG GSKPDFGRRE REVIYMGVVL BACU014548/1-659 FQMTSKIEIP ASPQRQPASH SFRFRHRYYG GSKPNFGRRE REVIYMGVVL 201 250 ENSP00000310208/1-635 YAPSLALNAV TGFDLWLSVL ALGIVCTVYT ALGGLKAVIW TDVFQTLVMF ENSBTAP00000032888/1-638 YAPSLALNAV TGFDLWLSVL TLGIVCTIYT ALGGLKAVIW TDVFQTLVMF ENSTTRP00000011868/1-638 YAPSLALNAV TGFDLWLSVL TLGIVCTVYT ALGGLKAVIW TDVFQTLVMF bmy_01076T0/1-677 YAPSLALNAV TGFDLWLSVL TLGIVCTVYT ALGGLKAVIW TDVFQTLVMF BACU014548/1-659 YAPSLALNAV TGFDLWLSVL TLGIVCTVYT ALGGLKAVIW TDVFQTLVMF 251 300 ENSP00000310208/1-635 LGQLAVIIVG SAKVGGLGRV WAVASQHGRI SGFELDPDPF VRHTFWTLAF ENSBTAP00000032888/1-638 LGQLAVIIVG SAKVGGLGHV WEVASQHGLI SGIELDPDPF VRHTFWTLAF ENSTTRP00000011868/1-638 LGQLVVIIVG SAKVGGLGHV WDVASQHGLI SGIELDPDPF VRHTFWTLAF bmy_01076T0/1-677 LGQLVVIIVG SAKVGGLGHV WDVASQHGLI SGIELDPDPF VRHTFWTLAF BACU014548/1-659 LGQLVVIIVG SAKVGGLGHV WDVASQHGLI SGIELDPDPF VRHTFWTLAF 301 350 ENSP00000310208/1-635 GGVFMMLSLY GVNQAQVQRY LSSRTEKAAV LSCYAVFPFQ QVSLCVGCLI ENSBTAP00000032888/1-638 GGVFMMLSLY GVNQAQVQRY LSSRTEKAAV LSCYAVFPCQ QVALSMGCLI ENSTTRP00000011868/1-638 GGVFMMLSLY GVNQAQVQRY LSSRTEKAAV LSCYAVFPCQ QVVLCMGCLI bmy_01076T0/1-677 GGVFMMLSLY GVNQAQVQRY LSSRTEKAAV LSCYAVFPCQ QVVLCMGCLI BACU014548/1-659 GGVFMMLSLY GVNQAQVQRY LSSRTEKAAV LSCYAVFPCQ QVVLCMGCLI 351 400 ENSP00000310208/1-635 GLVMFAYYQE YPMSIQQAQA APDQFVLYFV MDLLKGLPGL PGLFIACLFS ENSBTAP00000032888/1-638 GLVMFTYYQE YPMSTQQSQA APDQFVLYFV MDLLRGLPGL PGLFVACLFS ENSTTRP00000011868/1-638 GLVMFAYYQE YPMSTQQTQA APDQFVLYFV MDLLRGLPGL PGLFVACLFS bmy_01076T0/1-677 GLVMFAYYQE YPMSTQQTQA TPDQFVLYFV MDLLRGLPGL PGLFVACLFS BACU014548/1-659 GLVMFAYYQE YPMSTQQTQA APDQFVLYFV MDLLRGLPGL PGLFVACLFS 401 450 ENSP00000310208/1-635 GSLSTISSAF NSLATVTMED LIRPWFPEFS EARAIMLSRG LAFGYGLLCL ENSBTAP00000032888/1-638 GSLSTISSAF NSLATVTMED LIRPWFPHVS EVRATMLSRI IAFGYGLLCL ENSTTRP00000011868/1-638 GSLSTISSAF NSLATVTMED LIRPWFPHFS EVRATMLSRI IAFGYGLLCL bmy_01076T0/1-677 GSLSTISSAF NSLATVTMED LIRPWFPHFS EVRATMLSRI IAFGYGLLCL BACU014548/1-659 GSLSTISSAF NSLATVTMED LIRPWFPHFS EVRATMLSRI IAFGYGLLCL 451 500 ENSP00000310208/1-635 GMAYISSQMG PVLQAAISIF GMVGGPLLGL FCLGMFFPCA NPPGAVVGLL ENSBTAP00000032888/1-638 GMAYISSQMG PVLQAAISIF GMVGGPLLGL FCLGMFFPCA NPPGAIVGLL ENSTTRP00000011868/1-638 GMAYISSQMG PVLQAAISIF GMVGGPLLGL FCLGMFFPCA NPPGAIVGLL bmy_01076T0/1-677 GMAYISSQMG PVLQAAISIF GMVGGPLLGL FCLGMFFPCA NPPGAIVGLL BACU014548/1-659 GMAYISSQMG PVLQAAISIF GMVGGPLLGL FCLGMFFPCA NPPGAIVGLL 501 550 ENSP00000310208/1-635 AGLVMAFWIG IGSIVTSMGS SMPPSPSNGS SFSLPTNLTV ATVTTLMPLT ENSBTAP00000032888/1-638 AGLIMAFWIG IGSIVTSMGS GRALSPPNGS SFSLSSNLTA VTMATLMPST ENSTTRP00000011868/1-638 AGLIMAFWIG IGSTVSSLGS GRAPTPSNGS SFSLPSNLTA VTMATLMPST bmy_01076T0/1-677 AGLIMAFWIG IGSIVTSTGS GRASTPSNGS SFSLPSNLTA VTMATLMPST BACU014548/1-659 AGLIMAFWIG IGSIVTSTGS GRAPTPSDGS SFSLPSNLTA VTMATLMPST 551 600 ENSP00000310208/1-635 TFSKPTGLQR FYSLSYLWYS AHNSTTVIVV GLIVSLLTGR MRGRSLNPAT ENSBTAP00000032888/1-638 AASKPTGLQR LYSLSYLWYS AHNSTTVIVV GLAVSLLSGG MRGRTVDPRT ENSTTRP00000011868/1-638 TISKPTGLQR LYSLSYLWYS AHNSTTVIVV GLAVSLLSGG MRGRTLNPRT bmy_01076T0/1-677 TISKPTGLQR LYSLSYLWYS AHNSTTVIVV GLAVSLLSGG MRGRTLNPRT BACU014548/1-659 TISRPTGLQR LYSLSYLWYS AHNSTTVIVV GLAVSLLSGG MRGRTLNPRT 601 650 ENSP00000310208/1-635 IYPVLPKLLS LLPLSCQKRL HCRSYGQD-H LDTGLFPEKP RNGVLGDSRD ENSBTAP00000032888/1-638 IYPVLPKLLA LLPLSCQKRL PCRAGSQDLS LEACMFPEKM SNGMLRGSRD ENSTTRP00000011868/1-638 IYPVLPKLVA LLPMSCQKRL HCRTHSQDLS VDTAVFPEKV SNGMLRGSRD bmy_01076T0/1-677 IYPVLPKLVA LLPMSCQKRL HXKTLSQDLS VETAVFPEKV SNGMLRGSRD BACU014548/1-659 IYPVLPKLVA LLPMSCQKRL HCKTLSQDLS VETAVFPEKV SNGMLRGSRD 651 700 ENSP00000310208/1-635 KEAMAL--DG TAYQGSSSTC ILQETSL ENSBTAP00000032888/1-638 QVDMAVPEEG PVQPGISPTF ILQETSL ENSTTRP00000011868/1-638 KEAVDVPEED PAPQGISPTF IVQETSL bmy_01076T0/1-677 KEAMDVPEEG PAHQGISPTL ILQETSL BACU014548/1-659 KEAMDVPEEG PAHQGVSPTF VLQETSL