KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:29 2014 Check: 00 .. Name: ENSP00000326933/1-314 Len: 323 Check: 4788 Weight: 1.00 Name: ENSBTAP00000032937/1-315 Len: 323 Check: 9277 Weight: 1.00 Name: bmy_01564T0/1-311 Len: 323 Check: 3377 Weight: 1.00 Name: BACU013722/1-311 Len: 323 Check: 4115 Weight: 1.00 Name: ENSTTRP00000003384/1-263 Len: 323 Check: 6493 Weight: 1.00 // 1 50 ENSP00000326933/1-314 MLGKGGKRKF DEHEDGLEGK IVSPCDGPSK VSYTLQRQTI FNISLMKLYN ENSBTAP00000032937/1-315 MLGKGGKRKF DEHEDGLEGK IVSPSDGPSK VSYTLQRQTI FNISLMKLYN bmy_01564T0/1-311 MLGKGGKRKF DEHEDGLEGK IVSPSDGPSK VSYTLQRQTI FNISLMKLYN BACU013722/1-311 MLGKGGKRKF DEHEDGLEGK IVSPSDGPSK VSYTLQRQTI FNISLMKLYN ENSTTRP00000003384/1-263 MLGKGGKRKF DEHEDGLEGK IVSPSDGPSK VSYTLQRQTI FNISLMKLYN 51 100 ENSP00000326933/1-314 HRPLTEPSLQ KTVLINNMLR RIQEELKQEG SLRPMFTPSS QP---TTEPS ENSBTAP00000032937/1-315 HRPLTEPSLQ KTVLINNMLR RIQEELKQEG SLRPAFPASA PPAAAADPLG bmy_01564T0/1-311 HRPLTEPSLQ KTVLINNMLR RIQEELKQEG SLRPAFPASS PP---ADPLG BACU013722/1-311 HRPLTEPSLQ KTVLINNMLR RIQEELKQEG SLRPAFPASS PP---ADPLG ENSTTRP00000003384/1-263 HRPLTEPSLQ KTVLINNMLR RIQEELKQEG SLRPAFPASS PP---ADPLG 101 150 ENSP00000326933/1-314 DSYREAPPAF SHLASPSSHP CDLGSTTPLE ACLTPASLLE DDD-DTFCTS ENSBTAP00000032937/1-315 SSSREAPPAF SQ---PAPAP CELGGAAALE ACLTPASLLE DDDPDTFCTS bmy_01564T0/1-311 SSYREAPPAF SH---PAPAP CELGGAAPLE ACLTPASLLE DDQ-DTFCTS BACU013722/1-311 SSYREAPPAF SH---PAPAP CELGGAAPLE ACLTPASLLE DDQ-DTFCTS ENSTTRP00000003384/1-263 SSYREAPPAF SH---PAPAP CELGGAAPLE ACLTPASLLE DDQ-DTFCTS 151 200 ENSP00000326933/1-314 QAMQPTAPTK LSPPA-LLPE KDSFSSALDE IEELCPTSTS TEAATAATDS ENSBTAP00000032937/1-315 S---PAAPAR LAPPALLPPE KDSFSSALDE IEELCPTSTS TEAAEA--DG bmy_01564T0/1-311 PAAQPAAPAR LAPPA-LPPE KDSFSSALDE IEELCPTSTS TEAAEATTDD BACU013722/1-311 PAAQPAAPAR LSPPA-LPPE KDSFSSALDE IEELCPTSTS TEAAEATTDD ENSTTRP00000003384/1-263 PAAQPAAPAR LAPPA-LPPE KDSFSSALDE IEELCPTSTS MEAAEATTDD 201 250 ENSP00000326933/1-314 VKGT--SSEA GT-QKLDGPQ E-SRADDSKL MDSLPGNFEI TTSTGFLTDL ENSBTAP00000032937/1-315 PKGDSSSGGP GAPQRPEGLQ EGGRPEDPKL MDSLPGNFEI TASTGFLTDL bmy_01564T0/1-311 PKGD--SGGP GA-QRPEGLQ D-GRPDDPKL MDSLPGNFEI TTSTGFLTDL BACU013722/1-311 PKGD--SGGP GA-QRPEGLQ D-GRPDDPKL MDSLPGNFEI TTSTGFLTDL ENSTTRP00000003384/1-263 PKGD--SGGP GA-QRPEGLQ D-GRPDDPKL MDSLPGNFEI TTSTGFLTDL 251 300 ENSP00000326933/1-314 TLDDILFADI DTSMYDFDPC TSSSGTASKM APVSADDLLK TLAPYSSQPV ENSBTAP00000032937/1-315 TLDDILFADI DTSMYDFDPC TSASGTASKM SPVSADDLLK TLAPYSSQPV bmy_01564T0/1-311 TLDDILFADI DTSMYDFDPC TSASGTSSKM SPVSADDLLK TLAPYSSQPV BACU013722/1-311 TLDDILFADI DTSMYDFDPC TSASGTSSKM SPVSADDLLK TLAPYSSQPV ENSTTRP00000003384/1-263 TLDDILFADI DTSMYDFDPC TSASG----- ---------- ---------- 301 350 ENSP00000326933/1-314 TPSQPFKMDL TELDHIMEVL VGS ENSBTAP00000032937/1-315 APSQPFKMDL TELDHIMEVL VGS bmy_01564T0/1-311 APSQPFKMDL TELDHIMEVL VGS BACU013722/1-311 APSQPFKMDL TELDHIMEVL VGS ENSTTRP00000003384/1-263 ---------- ---------- ---