KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:30 2014 Check: 00 .. Name: ENSP00000361185/1-550 Len: 699 Check: 8740 Weight: 1.00 Name: ENSBTAP00000032951/1-551 Len: 699 Check: 5552 Weight: 1.00 Name: bmy_17954T0/1-530 Len: 699 Check: 3846 Weight: 1.00 Name: BACU005466/1-561 Len: 699 Check: 3234 Weight: 1.00 Name: ENSTTRP00000014286/1-517 Len: 699 Check: 9653 Weight: 1.00 // 1 50 ENSP00000361185/1-550 MASVFHYFLL VLVFLDTHAA QPFCLPGCTC SEESFG---- ---------- ENSBTAP00000032951/1-551 MASVPHYFLL VLVFLDSHVA QPSCLPGCAC SEESFG---- ---------- bmy_17954T0/1-530 -MRVAVGILW LLALGGPPQA WGACPSQCSC SLHVLGDGSK ARTVVCNDPD BACU005466/1-561 MASVSHYFLL ALVFLDSHAA QPSCLTGCTC SEESFG---- ---------- ENSTTRP00000014286/1-517 ---------- ---------- ---------- ---SFG---- ---------- 51 100 ENSP00000361185/1-550 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032951/1-551 ---------- ---------- ---------- ---------- ---------- bmy_17954T0/1-530 MTLPPASVPL DTSSLRLERT AIRRVPGEAF KPLGRLEQLW LPYNALCELN BACU005466/1-561 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014286/1-517 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000361185/1-550 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032951/1-551 ---------- ---------- ---------- ---------- ---------- bmy_17954T0/1-530 ALMLRGLRRL RELRMPGNRL AAFPWAALRD APKLRLLDLQ ANRLSTVPPE BACU005466/1-561 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014286/1-517 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000361185/1-550 ---------- ---------- ---RTLQCTS VSLGKIPGNL SEEFKQVRIE ENSBTAP00000032951/1-551 ---------- ---------- ---RTLKCVS ISLGEIPRNL SEEFKQVRIE bmy_17954T0/1-530 AARFLENLTF LDLSSNQLLR LPEETLQCVS ITLGKIPRKL PEEFKQVRIE BACU005466/1-561 ---------- ---------- ---RTLQCMS ITLGKIPRKL PEEFKQMRIE ENSTTRP00000014286/1-517 ---------- ---------- ---RTLQCVS ITLGKIPRKL PEEFKQVRIE 201 250 ENSP00000361185/1-550 NSPLFEMPQG SFINMSTLEY LWLNFNNISV IHLGALEHLP ELRELRLEGN ENSBTAP00000032951/1-551 NSPVFELPRG FFINMHTLEY LWLNFDNVTV IHPGALEHLS ELKELRLEGN bmy_17954T0/1-530 NSPLFELPRG SFINMSTLEY LWLNFNNVTV IHLGALEHMS ELKELRLEGN BACU005466/1-561 NSPLFELPRG SFINMSTLEY LWLNFNNVTV IHLGALEHLS QLKELRLEGN ENSTTRP00000014286/1-517 NSPLFELPRG SFINMSTLEY LWLNFNNVTV IHLGALEHLS ELKELRLEGN 251 300 ENSP00000361185/1-550 KLCSVPWTAF RATPLLRVLD LKRNKIDALP ELALQFLVSL TYLDLSSNRL ENSBTAP00000032951/1-551 KLRSVPWTAF RATPLLRILD LKHNRIDALP ELALQFLVNL TYLDLSSNRL bmy_17954T0/1-530 KLRSVPWTAF RATPLLRVLD LKHNRIDALP ELALQFLVNL TYLDLSSNRL BACU005466/1-561 KLRSVPWTAF RATPLLRVLD LKHNRIDALP ELALQFLVNL TYLDLSSNRL ENSTTRP00000014286/1-517 KLRSVPWTEF RATPLLRVLD LKHNRIDALP ELALQFLVNL TYLDLSSNRL 301 350 ENSP00000361185/1-550 TVVSKSVFLN WPAYQKCRQP DCGAEILSSL VVALHDNPWV CDCRLRGLVQ ENSBTAP00000032951/1-551 TVVSKNVFLN WPAYQKHRQS GHEAEMLSSM VLALHDNPWL CDCRLRGLVQ bmy_17954T0/1-530 TVVAKSVFLN WPAYQKHQQP GCGAEVLSSM VLALHDNPWL CDCRLRGFVQ BACU005466/1-561 TVVAKSVFLN WPAYQKHRQP GCGAEILSSM VLALHDNPWL CDCRLRGLVQ ENSTTRP00000014286/1-517 TVVAKSVFLN WPAYQKHRQP GCETEILSSM MLALHDNPWL CDCRLRGLVQ 351 400 ENSP00000361185/1-550 FVKSITLPVI LVNSYLICQG PLSKAGQLFH ETELSACMKP QISTPSANIT ENSBTAP00000032951/1-551 FIKSISLPVI LVNPYLMCRG PLFKAGQLFH ETELSVCTKP QISTPSANVS bmy_17954T0/1-530 FVKSISLPVV LVNPYLMCRG PLSKAGQLFH ETELSACMKP QISTPSANVS BACU005466/1-561 FVKSISLPVV LVNPYLMCRG PLSKAGQLFH ETELSACMKP QISTPSANVS ENSTTRP00000014286/1-517 FVKSISLPVV LVNPYLTCRG PLSKAGQLFH ETELSACMKP QISTPSANVS 401 450 ENSP00000361185/1-550 IRAGQNVTLR CLAQASPSPS IAWTYPLSMW REFDVLTSST GEDTALSELA ENSBTAP00000032951/1-551 VQVGQNVTLR CLAQASPSPT IAWTYPLSTW REFDVLTSFT AEDATLSELV bmy_17954T0/1-530 IRVGQNVTLR CLVQASPSPT IAWTYPLSTW REFDVLTSST AEDAALSELV BACU005466/1-561 IRVGQNVTLR CLVQASPSPT IAWTYPLSTW REFDVLTSST AEDAALSELV ENSTTRP00000014286/1-517 IRVGQNVTLR CLVQASPSPT IAWTYPLSKW REFDVLTSST AEDAALSELV 451 500 ENSP00000361185/1-550 IPAAHLVDSG NYTCMASNSI GKSNLVISLH VQPAQALHAP DSLSIPSEGN ENSBTAP00000032951/1-551 IPAAHLVDRG NYTCMASNPI GMSTVVISLR VQPAQALLAP RSVFSPSESS bmy_17954T0/1-530 IPAAHLVDRG NYTCVASNSI GRSTCVISLR VQPAQAPPAL HSLFSTSEGN BACU005466/1-561 IPAAHLVDRG SYTCVASNSI GRSTCVISLH VQPAQAPPTL HSLFSTSEGN ENSTTRP00000014286/1-517 IPAAHLVDRG SYTCVASNSI GRSSCVISLH VQPAQAAPTL HSLFSTSEGN 501 550 ENSP00000361185/1-550 AYIDLRVVKQ TVHGILLEWL AVADTSKEEW FTLYIASDEA FRKEVVHIGP ENSBTAP00000032951/1-551 AYVDLRVVKQ TVHGILLEWF AAADTP-ETW FTLYIASDEA FRKKVVHVGP bmy_17954T0/1-530 AYVDLRVVQQ TVRGIVLE-- ---------- ---------- ---------- BACU005466/1-561 AYVDLRVVKQ TVRGIVLEWF VAADTP-EKW FTLYIGSDEA LRKEVVHVGP ENSTTRP00000014286/1-517 AYVDLRVVKQ TVRGIVLEWF VAADTP-EKW FTLYIGSEEA RRKEVVHVGP 551 600 ENSP00000361185/1-550 GINTYAVDDL LPGTKYEACL SLEGQPPHQG QCVAFVTGRD AGGLEAREHL ENSBTAP00000032951/1-551 GINTYTVDDL LPGTKYEICL SLGGQPPRQG RCVVFVTGRD DGGLEGRERL bmy_17954T0/1-530 ---------- --------CL ---------- ---------- QGSL------ BACU005466/1-561 GISTYLVDDL LPGTKYEVCL SLGRRPPRQG RCVVFVTGRD HGGLEGRERL ENSTTRP00000014286/1-517 GISTYLVDDL LPGTKYEVCL SLGRQPPRQG RCVVFVTGRD HGGLEGRERL 601 650 ENSP00000361185/1-550 LHVTVVLCVV LLAVPVGAYA WAAQGPCSCS KWVLRGCLHR RKAPSCTPAA ENSBTAP00000032951/1-551 LHTTVILCAV LLAVPVGAYA WAAQAPCSCR GWGQRWCLHR RKAPRCPQAV bmy_17954T0/1-530 ---------- ---------- ---------- ---------- ------TLNL BACU005466/1-561 LHTTVILCAV LLAVPVGAYV WAVQAPCSCR DWGLRCCPHR RKAPRCPLAV ENSTTRP00000014286/1-517 LHTTVILCAV LLSVPVGAYV WAVQAPCSCR EWGLRCCPHR RKAPRCPLAV 651 700 ENSP00000361185/1-550 PQSKDGSFRE HPAVCDDGEG H--IDTEGDK EKGGTEDNS- --------- ENSBTAP00000032951/1-551 PEHRDDPYRD HTAVCEDGLG PGGADPEGDE QRAGEGDDH- --------- bmy_17954T0/1-530 SQH------- ---------- ---------- ---------- --------- BACU005466/1-561 PEHRDVSYGD HTAVCEDGLG HRDAEGEGDE ERDGEGDSGP GGMVWASSP ENSTTRP00000014286/1-517 PEHRDVSYRD HTAVCEDGLG HRGAEGEGDE ERDEEGDS-- ---------