KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:30 2014 Check: 00 .. Name: ENSP00000331172/1-243 Len: 265 Check: 280 Weight: 1.00 Name: ENSBTAP00000032971/1-210 Len: 265 Check: 9756 Weight: 1.00 Name: bmy_19986T0/1-131 Len: 265 Check: 8656 Weight: 1.00 Name: ENSTTRP00000013776/1-206 Len: 265 Check: 9043 Weight: 1.00 Name: BACU005890/1-263 Len: 265 Check: 1614 Weight: 1.00 // 1 50 ENSP00000331172/1-243 MRPRLWLLLA AQLTVLHGNS VLQQTPAYIK VQTNKMVMLS CEAKISLSNM ENSBTAP00000032971/1-210 MQARLWLLLA AQLAALHGSL ALVQTPAFLM VQTNQMVTLS CKTQTSPSNT bmy_19986T0/1-131 MQPRLWLLLA AQLAALRGSS ALLQTPASMA ALTNQTVMLS CEAKTFPTNP ENSTTRP00000013776/1-206 MQPRLWLLVA AQLAALRGSS VLLQTPASTT AQTNQTVTLS CEAKTSPTNS BACU005890/1-263 MQPLLWLLLA AQLAALCGSS ALLQTPASMT AQTNQTVMLS CEAKTLPTHS 51 100 ENSP00000331172/1-243 RIYWLRQRQA PSSDSHHEFL ALWDSAKGTI HGEEVEQEKI AVFRDASRFI ENSBTAP00000032971/1-210 RIYWLRLRQA LSANSHYEFL AYWE-SKKTV YGKEVDSEKL TVHGNPPQSV bmy_19986T0/1-131 RIYWLRQRQA PSANSHYEFL AFWDLTKGAV YGKDVEQEKL TVLRDSSRYT ENSTTRP00000013776/1-206 RIYWLRQRLA PSANSHFEFL AFWDLTRGTV YGEEVGQERL TVLRDSSRYT BACU005890/1-263 RIYWLRQRQA PSANSHYEFL AFWDLTKGTV HGKEVEQEKL TVLRDSSRYT 101 150 ENSP00000331172/1-243 LNLTSVKPED SGIYFCMIVG SPELTFGKGT QLSVVDFLPT TAQPTKKSTL ENSBTAP00000032971/1-210 LTLQNVKPAD SGVYFCMIIG IPNLIFGTGT QLSVVDVLPT SPQPTKKTSP bmy_19986T0/1-131 LSLRGAKPSD SGVYFCMTAG GIE------- ---------- ----SDKGTP ENSTTRP00000013776/1-206 LSLQSVKPSD SGVYFCMTVG NPDLTFGKGT QLSVVDVLPT TPQPTKKTTP BACU005890/1-263 LSLRSVKPSD SGVYFCMTVG NPDLTFGKGT QLSVVDVLPT TPQPTKKTTP 151 200 ENSP00000331172/1-243 KKRVC-RLPR PETQKGPLCS PITLGLLVAG VLVLLVSLGV AIHLCCRRRR ENSBTAP00000032971/1-210 KKKVCHRVPT QVTQKRLSCA PLILGLLAAG VLILLVSLGV AIHLRCLQRR bmy_19986T0/1-131 RD-------- ---------- ---------- ---------- ---------- ENSTTRP00000013776/1-206 KKKVL-RFPN LVTRKGPSCA PLIVGPLVAV VLVLLVFLGV AIHLHCLQRR BACU005890/1-263 KKKVF-RFPN LVTRKGLSCA PLIVGLLAAV VLVLLVSLGV AIHLHCLQRR 201 250 ENSP00000331172/1-243 ARLRFMKQPQ GEGISGTFVP QCLHGYYSNT TTSQKLLNPW ILKT------ ENSBTAP00000032971/1-210 ARLRLLKQFY K--------- ---------- ---------- ---------- bmy_19986T0/1-131 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013776/1-206 ARLRLLK--- ---------- ---------- ---------- ---------- BACU005890/1-263 ARLRLLKHTV N-NPPGEHKL NVLDANGAPN VSLARILGLH HLRGHGHRAD 251 300 ENSP00000331172/1-243 ---------- ----- ENSBTAP00000032971/1-210 ---------- ----- bmy_19986T0/1-131 ---------- ----- ENSTTRP00000013776/1-206 ---------- ----- BACU005890/1-263 TWVTPRASLC LPQAQ