KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:31 2014 Check: 00 .. Name: bmy_00352T0/1-488 Len: 595 Check: 5281 Weight: 1.00 Name: ENSTTRP00000012045/1-584 Len: 595 Check: 8473 Weight: 1.00 Name: ENSP00000385045/1-515 Len: 595 Check: 231 Weight: 1.00 Name: BACU001608/1-532 Len: 595 Check: 8612 Weight: 1.00 Name: ENSBTAP00000033014/1-581 Len: 595 Check: 2524 Weight: 1.00 // 1 50 bmy_00352T0/1-488 ---------- -----MSSST AGEGLRYAEY SPPPTKRLDA NIDRGLARSS ENSTTRP00000012045/1-584 ---------- YVYFENSSSN PYLIRRIEEL NKTATGNVEA KVVCFYRRRD ENSP00000385045/1-515 MAANMYRVGD YVYFENSSSN PYLIRRIEEL NKTASGNVEA KVVCFYRRRD BACU001608/1-532 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033014/1-581 ---------D YVYFENSSSN PYLIRRIEEL NKTATGNVEA KVVCFYRRRD 51 100 bmy_00352T0/1-488 IAVGLGIAAL GFAEEIEEES ETTIEAADLT DKQKHQLKHR ELFLSRQYES ENSTTRP00000012045/1-584 ISNTLIMLAD KHAKEIEEES ETTIE-ADLT DKQKHQLKHR ELFLSRQYES ENSP00000385045/1-515 ISNTLIMLAD KHAKEIEEES ETTVE-ADLT DKQKHQLKHR ELFLSRQYES BACU001608/1-532 ------MLAD KHAKEIEEES ETTIE-ADLT DKQKHQLKHR ELFLSRQYES ENSBTAP00000033014/1-581 ISNTLIMLAD KHAKEIEEES ETTVE-ADLT DKQKHQLKHR ELFLSRQYES 101 150 bmy_00352T0/1-488 LPATHIRGKC SVALLNETES VLSYLDKEDT FFYSLVYDPS VKTLLADKGE ENSTTRP00000012045/1-584 LPATHIRGKC SVALLNETES VLSYLDKEDT FFYSLVYDPS VKTLLADKGE ENSP00000385045/1-515 LPATHIRGKC SVALLNETES VLSYLDKEDT FFYSLVYDPS LKTLLADKGE BACU001608/1-532 LPATHIRGKC SVALLNETES VLSYLDKEDT FFYSLVYDPS VKTLLADKGE ENSBTAP00000033014/1-581 LPATHIRGKC SVALLNETES VLSYLDKEDT FFYSLVYDPS VKTLLADKGE 151 200 bmy_00352T0/1-488 IRVGPRYQAD IPEMLLEGES DEREQSKLEV KVWDPNSPLT DRQIDQFLVV ENSTTRP00000012045/1-584 IRVGPRYQAD IPEMLLEGES DEREQSKLEV KVWDPNSPLT DRQIDQFLVV ENSP00000385045/1-515 IRVGPRYQAD IPEMLLEGES DEREQSKLEV KVWDPNSPLT DRQIDQFLVV BACU001608/1-532 IRVGPRYQAD IPEMLLEGES DEREQSKLEV KVWDPNSPLT DRQIDQFLVV ENSBTAP00000033014/1-581 IRVGPRYQAD IPEMLLEGES DEREQSKLEV KVWDPNSPLT DRQIDQFLVV 201 250 bmy_00352T0/1-488 ARAVGTFARA LDCSSSVRQP SLHMSAAAAS RDITLFHAMD TLYRHSYDLS ENSTTRP00000012045/1-584 ARAVGTFARA LDCSSSVRQP SLHMSAAAAS RDITLFHAMD TLYRHSYDLS ENSP00000385045/1-515 ARAVGTFARA LDCSSSVRQP SLHMSAAAAS RDITLFHAMD TLYRHSYDLS BACU001608/1-532 ARAVGTFARA LDCSSSVRQP SLHMSAAAAS RDITLFHAMD TLYRHSYDLS ENSBTAP00000033014/1-581 ARAVGTFARA LDCSSSVRQP SLHMSAAAAS RDITLFHAMD TLYRHGYDLS 251 300 bmy_00352T0/1-488 SAISVLVPLG GPVLCRDEME EWSASEASLF EEALEKYGKD FNDIRQDFTF ENSTTRP00000012045/1-584 SAISVLVPLG GPVLCRDEME EWSASEASLF EEALEKYGKD FNDIRQDFXX ENSP00000385045/1-515 SAISVLVPLG GPVLCRDEME EWSASEASLF EEALEKYGKD FNDIRQDFLP BACU001608/1-532 SAISVLVPLG GPVLCRDEME EWSASEASLF EEALEKYGKD FNDIRQDFLP ENSBTAP00000033014/1-581 SAISVLVPLG GPVLCRDEME EWSASEASLF EEALEKYGKD FNDIRQDFLP 301 350 bmy_00352T0/1-488 SIFLVILLII EPEFDTDLYY --RNDLYQAE QKNXLYGFSI ---------- ENSTTRP00000012045/1-584 XXXXXXXXXX XXXXXXXXXX XXXKRLKAAE AESKLKQVYI PTYSKPNPNQ ENSP00000385045/1-515 WKSLTSIIEY YYMWKTTDRY VQQKRLKAAE AESKLKQVYI PTYSKPNPNQ BACU001608/1-532 WKSLTSIIEY YYMWKTTDRY VQQKRLKAAE AESKLKQVYI PTYSKPNPNQ ENSBTAP00000033014/1-581 WKSLTSIIEY YYMWKTTDRY VQQKRLKAAE AESKLKQVYI PTY-KPNPNQ 351 400 bmy_00352T0/1-488 ---------- --------FT LLDDM----- ---------- ------QDLT ENSTTRP00000012045/1-584 ISTSNGKPGA VNGAVGSAFQ PQNPLLGRAC ESCYATQSHQ WYSWGPPNMQ ENSP00000385045/1-515 ISTSNGKPGA VNGAVGTTFQ PQNPLLGRAC ESCYATQSHQ WYSWGPPNMQ BACU001608/1-532 ISTSNGKPGA VNGAVGTAFQ PQNPLLGRAC ESCYATQSHQ WYSWGPPNMQ ENSBTAP00000033014/1-581 ISTSNGKPGA VNGAVGTTFQ PQNPLLGRAC ESCYATQSHQ WYSWGPPNMQ 401 450 bmy_00352T0/1-488 CILNTR--FH YDKYFGQTAG KDTNR----- ----EDPRVR SHMSRQAMQG ENSTTRP00000012045/1-584 CRLCATCWLY WKKYGGLKMP TQSEEEKLPP SPATEDPRVR SHMSRQAMQG ENSP00000385045/1-515 CRLCAICWLY WKKYGGLKMP TQSEEEKLSP SPTTEDPRVR SHVSRQAMQG BACU001608/1-532 CRLCATCWLY WKKYGGLKMP TQSEEEKLPP SPATEDPRVR SHMSRQAMQG ENSBTAP00000033014/1-581 CRLCATCWLY WKKYGGLKMP TQSEEEKLPP SPATEDPRVR SHMSRQAMQG 451 500 bmy_00352T0/1-488 MPVRNTGSPK SAVKTRQAFF LHTTYFTKFA RQVCKNTLRL RQAARRPFVP ENSTTRP00000012045/1-584 MPVRNTGSPK SAVKTRQAFF LHTTYFTKFA RQVCKNTLRL RQAARRPFVP ENSP00000385045/1-515 MPVRNTGSPK SAVKTRQAFF LHTTYFTKFA RQVCKNTLRL RQAARRPFVA BACU001608/1-532 MPVRNTGSPK SAVKTRQAFF LHTTYFTKFA RQVCKNTLRL RQAARRPFVP ENSBTAP00000033014/1-581 MPVRNTGSPK SAVKTRQAFF LHTTYFTKFA RQVCKNTLRL RQAARRPFVP 501 550 bmy_00352T0/1-488 INYAAIRAEY ADRHADLSGS PLKSKSTRKP LACIIGYL-- --VKVKYVLR ENSTTRP00000012045/1-584 INYAAIRAEY ADRHADLSGS PLKSKSTRKP LACIIGYLEI HPSKKPNVIR ENSP00000385045/1-515 INYAAIRAEC ---------- ---------- ---------- ---------- BACU001608/1-532 INYAAIRAEY ADRHADLSGS PLKSKSTRKP LACIIGYLEI HPSKKPNVIR ENSBTAP00000033014/1-581 INYAAIRAEY ADRHADLSGS PLKSKSTRKP LACIIGYLEI HPSKKPNVIR 551 600 bmy_00352T0/1-488 VALNLITLSE RFIFVKCSD- ---------- ---------- ----- ENSTTRP00000012045/1-584 STPSLQTPAT KRMLTTPNHT SLSILGKRNY SHHNGLDEFT CCVSD ENSP00000385045/1-515 ---------- -KMLLNS--- ---------- ---------- ----- BACU001608/1-532 STPSLQTPTT KRMLTTPNHT SLSILGKRNY SHHNGLDGM- ----- ENSBTAP00000033014/1-581 STPSLQTPTT KRMLATPNHT SLSILGKRNY SHHNGLDERL MK---