KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:36 2014 Check: 00 .. Name: ENSTTRP00000016577/1-300 Len: 302 Check: 7035 Weight: 1.00 Name: ENSP00000233615/1-269 Len: 302 Check: 9177 Weight: 1.00 Name: ENSBTAP00000033108/1-269 Len: 302 Check: 8844 Weight: 1.00 Name: bmy_12424T0/1-249 Len: 302 Check: 894 Weight: 1.00 Name: BACU010575/1-249 Len: 302 Check: 868 Weight: 1.00 // 1 50 ENSTTRP00000016577/1-300 MARASGGNGS EEDWGALRVP QQQSLAASTL EGAIWRRAGT QTRALDAIRH ENSP00000233615/1-269 MARASSGNGS EEAWGALRAP QQQ------- ---------- ---------- ENSBTAP00000033108/1-269 MARATGGNGS EEAWGALRVR QQQ------- ---------- ---------- bmy_12424T0/1-249 MARASGGNGS EEDWGALRVP QQQ------- ---------- ---------- BACU010575/1-249 MARASGGNGS EEDWGALRVP QQQ------- ---------- ---------- 51 100 ENSTTRP00000016577/1-300 PQQSHLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000233615/1-269 ------LREL CPGVNNQPYL CESGHCCGET GCCTYYYELW WFWLLWTVLI ENSBTAP00000033108/1-269 ------LREL CPGVNNQPYL CESGHCCGET GCCTYYYELW WFWLLWTVLI bmy_12424T0/1-249 ------LREL CPGVNNQPYL CESGHCCGET GCCTYYYELW WFWLLWTVLI BACU010575/1-249 ------LREL CPGVNNQPYL CESGHCCGET GCCTYYYELW WFWLLWTVLI 101 150 ENSTTRP00000016577/1-300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000233615/1-269 LFSCCCAFRH RRAKLRLQQQ QRQREINLLA YHGACHGAGP FPTGSLLDLR ENSBTAP00000033108/1-269 LFSCCCAFRH RRAKLRLQQQ QRQREINLLA YHGACHGAGP VPAGSLLDLR bmy_12424T0/1-249 LFSCCCAFRH RRAKLRLQQQ QRQREINLLA YHGACHGAGP VPPGSLLDLR BACU010575/1-249 LFSCCCAFRH RRAKLRLQQQ QRQREINLLA YHGACHGAGP VPPGSLLDLR 151 200 ENSTTRP00000016577/1-300 LLSTFKPPAY EDVVHRPGTP PPPYTAASGC PSTASSECTC CSSASSCPAH ENSP00000233615/1-269 FLSTFKPPAY EDVVHRPGTP PPPYTVAPGR PLTASSEQTC CSSSSSCPAH ENSBTAP00000033108/1-269 LLSAFKPPAY EDVVHRPGTP PPPYTAATGC PSTASSQCTC CSSASSCPAR bmy_12424T0/1-249 LLSTFKPPAY EDVVHRPGTP PPPYTAASGC PSTASSECTC CSSASSCPAH BACU010575/1-249 LLSTFKPPAY EDVVHRPGTP PPPYTAASGC PSTASSECTC CSSASSCPAH 201 250 ENSTTRP00000016577/1-300 QEGTNVEDVS SHQSDPPHQE GEPGAGVSPA PTPPFCRYRR LTGDSGIELC ENSP00000233615/1-269 FEGTNVEGVS SHQSAPPHQE GEPGAGVTPA STPPSCRYRR LTGDSGIELC ENSBTAP00000033108/1-269 HEGTNVEDVS SHQSAPPHQE GELGAGVSPA PTPPSCRYRR LTGDSGIELC bmy_12424T0/1-249 QEGTNVEDVS SHQSDPPHQE GEPGAGVSPA PTPPFCRYRR LTGDSGIELC BACU010575/1-249 QEGTNVEDVS SHQSDPPHQE GEPEAGVSPA PTPPFCRYRR LTGDSGIELC 251 300 ENSTTRP00000016577/1-300 PCPDSSEGEP VKEARASATP PDVEDQS-CA RPLDPVPQV- PLGLASNEGD ENSP00000233615/1-269 PCPASGEGEP VKEVRVSATL PDLEDYSPCA LPPESVPQIF PMGLSSSEGD ENSBTAP00000033108/1-269 PCPDSSEGEP VKEARVSATS QEVEDQSPCA QPLNPAPQVS PVGLASSEGD bmy_12424T0/1-249 PCPDSSEGEP VKEARASATP PDVEDQSPVH GP-------- ---------- BACU010575/1-249 PCPDSSEGEP VKEARASATP PDVEEQSPVH GP-------- ---------- 301 350 ENSTTRP00000016577/1-300 IP ENSP00000233615/1-269 IP ENSBTAP00000033108/1-269 IP bmy_12424T0/1-249 -- BACU010575/1-249 --