KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:39 2014 Check: 00 .. Name: ENSP00000407761/1-580 Len: 692 Check: 4278 Weight: 1.00 Name: ENSTTRP00000002898/1-516 Len: 692 Check: 2346 Weight: 1.00 Name: ENSBTAP00000033168/1-580 Len: 692 Check: 7047 Weight: 1.00 Name: bmy_08329T0/1-455 Len: 692 Check: 2848 Weight: 1.00 Name: BACU017740/1-331 Len: 692 Check: 6962 Weight: 1.00 // 1 50 ENSP00000407761/1-580 ---------- ---------- ---------- ---------- --MRALTVQR ENSTTRP00000002898/1-516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033168/1-580 ---------- ---------- ---------- ---------- --MRTLTFQR bmy_08329T0/1-455 MATFGIGSLA NLTAIYFKLR QCS------C PVPLLAGGEE RACVALGFEA BACU017740/1-331 MSVLSDPWVQ RLHSWSPSIQ RLNIHFVSIC HRYALSLGEM R---ALTFQR 51 100 ENSP00000407761/1-580 VKFA------ ------MDLP LLKRA--GQD ---------- ---------- ENSTTRP00000002898/1-516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033168/1-580 VTFT------ ------MGLP LLKRA--IQD ---------- ---------- bmy_08329T0/1-455 AVHSKGEEGN KGGPDLMNVP KSSKSSVLED CPRRQDCHLD WRQLLAVGGS BACU017740/1-331 VTFT------ ------MGLP LLKRT--IQD ---------- ---------- 101 150 ENSP00000407761/1-580 ------LAEK TKNFVSRSLV IGEVLSMADM ATGVKCGIIY WLFGGAIRNL ENSTTRP00000002898/1-516 -------AEK TTNFVSRSLV IGEVL-IADM APGVKCGIIC WLFGGTIRKL ENSBTAP00000033168/1-580 ------QVEK TRNFVSRSLV IGEVLSMADM ATGVKCGIIY WLFGGAIRSL bmy_08329T0/1-455 VGAEMLQAEK TKNFVTRSLV IGEVLSIADM ATGVK----- ---------- BACU017740/1-331 ------QAEK TKNFVSRSLV IGKVLSIADV ATGVK----- ---------- 151 200 ENSP00000407761/1-580 GSPEHVTKWF QPLQEQKYTG MFAMTERGHG SNARGIQTEA TFDLSAQEFV ENSTTRP00000002898/1-516 GSPACVAKWL QPLQEQKYTG MFAMTERGHR SNVRGIRTEA IFDLSAQEFV ENSBTAP00000033168/1-580 GGPAHVTQWL QPLQEQKYTG MFAMTERGHG SNVRVIQTEA TFDFSAQEFV bmy_08329T0/1-455 ---------- ----EQKYTG MFAMTERGHR SNVRGIQTEA TFDLSAQEFV BACU017740/1-331 ---------- ----EQKYTG MFAVTERGHG SNVRGIQTEA TFDLSAQEFV 201 250 ENSP00000407761/1-580 IDTPCENAEK MYIGNAMYGN YAAVFAQLII DGRSQGPHCF IVPVRDENGS ENSTTRP00000002898/1-516 IDTPCENAEK MYIGNAMYGN YAAVLAQLII NGRSQGPHCF IVPVREENGS ENSBTAP00000033168/1-580 IDTPCKNAEK MYIGNAMYGN YAAVFAQLII NGRSQGPHCF IVPVRDENGS bmy_08329T0/1-455 IBTPCENAEK MYIGNPMYGN YAAVFAQLII NGRSQGPHCF IVPVRDENGS BACU017740/1-331 IDTPCENAEK MYVGSATYGN YAAVFAQLII NGRSQGPHCF IVPVCNENGS 251 300 ENSP00000407761/1-580 LYPGVTAIDM MYKEGLHGVD NGILIFDKVR IPRENLLDKF GSVAPDGQYH ENSTTRP00000002898/1-516 MYPGATAIDM MYK-GLHGVD TGILRFDKVR IPREKLLDKF GSVAPDGQYH ENSBTAP00000033168/1-580 LYPGVTVVDM MHKEGLHGVD NGILRFDSVR IPRENLLDKF GSVGPDGQYH bmy_08329T0/1-455 MYPGVTAIDM MYKEGLXXVD NGILRFDKVR IPRENLLDKF GSVAPDGQYH BACU017740/1-331 MYPGVTAIDM MYKEGLHGVD NGILRFDKVR IPRENLLDKF GSVAPDGQYH 301 350 ENSP00000407761/1-580 SPIRNKSARF NAMLAALTPS RLAVAFQAMG AMKLGLTIAI RYSHSRRQFG ENSTTRP00000002898/1-516 SPIKDKSARF NAMLAVLTPA RLAVTFQATG SMKLGLTIAI RYSHSQRQFG ENSBTAP00000033168/1-580 SPIKDKSARF NAMLAALTPS RLAVTFQAMG SMKLGLTIAI RYSHSRRQFG bmy_08329T0/1-455 SPIKDKSARF NVMLAVLTPS RLAVTFQATG SMKILHQEGI SFIHVTPGLT BACU017740/1-331 SPIKDKSARF NAMLAMLTPS RLAVTFQATG SVK------- ---------- 351 400 ENSP00000407761/1-580 PKTKEEVKII EHQTQTLRLM PHLATALALT FVSRYAGALL DEDVFQGKEL ENSTTRP00000002898/1-516 PKAKEEVKII EHQTQTLRLM PHLATALALS FANRYAGILL DEDVFRG-EL ENSBTAP00000033168/1-580 PKAREEVKII EHQTQTLRLM PHLATALALT FASRYAGTLL DEDIFRGKEL bmy_08329T0/1-455 SVCS---HLK SRKILPFSLL PGLHCSQEAC L-TELSHVVP FPPVGAAVTL BACU017740/1-331 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000407761/1-580 VNSRSLQALV AGLKAYSTWE NIRCLQDCRE CTGGM----- ---------- ENSTTRP00000002898/1-516 VGSRPLQVLV AGLKAYSTWE NIGYLQDGRE CTGGLGYMME NGISGLKRDT ENSBTAP00000033168/1-580 VDSRPLQALV AGLKAYSTWE NVSCLQDCRE CTGGM----- ---------- bmy_08329T0/1-455 SPEPVTVCLP VGAALCACFR WLFKTPE--- --GGK----- ---------- BACU017740/1-331 ---------- ---------- ----TPE--- --GGK----- ---------- 451 500 ENSP00000407761/1-580 ---------- -----VVGRE LLAQYTKQYE EKPLFGLLQN WAESVGDKLR ENSTTRP00000002898/1-516 DMFVTFEGDS VVMLQVVVQE LLAQYTKQYE ERPISSLLRN WTESGGDKLR ENSBTAP00000033168/1-580 ---------- -----VVVRE LLAQYTKQCE ERPVSSLLRN WVESGSDRLR bmy_08329T0/1-455 ---------- ---------- --RRESRRAQ NCTVEKMGQK -SDQGSVKRR BACU017740/1-331 ---------- ---------- --RRESRRAQ NCTVEKMGQK -SDQGSVKRG 501 550 ENSP00000407761/1-580 TSFLAFNMDT VDDLAFLLKA VKFRERVLQR GLVARIYYKV KTKKEDFFHA ENSTTRP00000002898/1-516 TSFLAFNMDT VGNLAFLLKA VNFH-RVLQR GLVVRIYYKV TSENEDFSSA ENSBTAP00000033168/1-580 TSFLAFNMDT VGHLTFLLKA VHFRERILQR GLVARIYYKV MTEKEDFFSA bmy_08329T0/1-455 QPYLHNSPSD HSSLGNPLR- -----RVL-- ---------- ---------- BACU017740/1-331 QPYLHNSPSD HSSLRAPLR- -----RVL-- ---------- ---------- 551 600 ENSP00000407761/1-580 WNSCLHHVAS LSLAHTHRVT LEQFSLAVKS CPDQEDQTLL MKFCLLYGTK ENSTTRP00000002898/1-516 WNSCLHHVTC LSLAHIHRVT -EQFSLPGRS CPE-EDQTLL KKFCLLYGTK ENSBTAP00000033168/1-580 WNSCLHHITC LSLAHIHRVT LEQFCLAVRN CPDQEDQDLL KQFCLLYGTK bmy_08329T0/1-455 ---------- --------VN IETTC----- ---------- ---------- BACU017740/1-331 ---------- --------VN IKTTC----- ---------- ---------- 601 650 ENSP00000407761/1-580 LVFQERAWYL EHKYLTPMAS TRIRNQLLDL CDSVKDDARR VISTFNIPHT ENSTTRP00000002898/1-516 LMFQEQAWYL EHKYLTPLAS MKIRRQ---- ---------- ---------- ENSBTAP00000033168/1-580 LVFQERAWYL EHKYLTPMTS MRIRRQLLHL CNSVKDDALR VISAFNISHA bmy_08329T0/1-455 -------WFV ALK--VP--- ---------- ---------- ---------- BACU017740/1-331 -------WFV ALK--VP--- ---------- ---------- ---------- 651 700 ENSP00000407761/1-580 YLHAPIAGIS NPRAAWAFYP APLQPRPREE ARSRRPKLGA KL ENSTTRP00000002898/1-516 ---------- ---------- ---------- ---------A RC ENSBTAP00000033168/1-580 SLHAPIAGFA NPNAAWVLYP APQHSLAGER ARSPRPKLGA KL bmy_08329T0/1-455 ---------- ---------- ---------- ---------- -- BACU017740/1-331 ---------- ---------- ---------- ---------- --