KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:40 2014 Check: 00 .. Name: ENSP00000362115/1-913 Len: 1030 Check: 9003 Weight: 1.00 Name: ENSBTAP00000033176/1-1005 Len: 1030 Check: 9693 Weight: 1.00 Name: ENSTTRP00000012840/1-995 Len: 1030 Check: 7867 Weight: 1.00 Name: bmy_02114T0/1-745 Len: 1030 Check: 7797 Weight: 1.00 Name: BACU009692/1-965 Len: 1030 Check: 4776 Weight: 1.00 // 1 50 ENSP00000362115/1-913 MDQSVAIQET LAEGEYCVIA VQGVLCEGDS RQSRLLGLVR YRLEHGGQEH ENSBTAP00000033176/1-1005 MDQSVAIQET LADGEYCVIA VQGVLCEGDS RQSRLLGLVR YRPERGGQEH ENSTTRP00000012840/1-995 MDQSVAIQET LAEGEYCIIA VQGALCEGES RQSRLLGLVR YRPEHGGQEH bmy_02114T0/1-745 MDEDV----- ---------- ---------- ---------- ---------- BACU009692/1-965 MDQSVAIQET LAEGEYCIII SFPAGAELPA PGPALPGLGK W-------NG 51 100 ENSP00000362115/1-913 ALFLYTHRRM AITGDDVSLD QIVPVSRDFT LEEVSPDGEL YILGSDVTVQ ENSBTAP00000033176/1-1005 ALFLYTHRRM AITGDDVSLD QIVPVSRDFT LEEVSPDGEL YILGSDVTVQ ENSTTRP00000012840/1-995 AXXXXXXXXX AVTGDDVSLD QIVPISRDFA LEEVSLDGEV YFLGSDVTVQ bmy_02114T0/1-745 ---------L VLAG------ ---------- ---------- ---------- BACU009692/1-965 SLFLYTHRRM AITGDDVSLD QIVPISRDFA LEEVSLDGEV YFLGSDVTVQ 101 150 ENSP00000362115/1-913 LDTAELSLVF QLPFGSQTRM FLHEVARACP GFDSATRDPE FLWLSRYRC- ENSBTAP00000033176/1-1005 LDTAELSLLF QLPFGSHTRT FLQEVARACP GFDPATPDPE FRWLSRYRCP ENSTTRP00000012840/1-995 LDTAELSLVF QLPFGSHTRT FLQEVTRACP GFNTKALDPK FLWLSRYRR- bmy_02114T0/1-745 ---------- ---------- ---------- ---------- ---------- BACU009692/1-965 LDTAELSLVF QLPFGSQTRT FLQEVARACP GFDPAALDPK FLWLSRYRR- 151 200 ENSP00000362115/1-913 -AELELEMPT PRGCNSALV- -TWPGYATIG G--------- ---------- ENSBTAP00000033176/1-1005 EPEPEPEPPT PQSWNSAPG- -TWPGRARIG GGRYRSWKAR KIGGDLASGT ENSTTRP00000012840/1-995 -KEPEPETPT PRGWNSAQGM XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02114T0/1-745 -RSPERD--- ---------- -TGSGHQR-- ---------- ---------- BACU009692/1-965 -KEPEPEPPT PRGWKSAAG- -TRPGRAIIG GGRYRSRKSN QFGPSPASSG 201 250 ENSP00000362115/1-913 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033176/1-1005 GPVLFWGGAT KQAGLRLARV ARGGGTLGGA ELGRRDEELE EAGREMSAAA ENSTTRP00000012840/1-995 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02114T0/1-745 ---------- ---------- ---------- ---------- ---------- BACU009692/1-965 VILKVLEQGE MKSGSNLAKS KD-------- ---------- ---------- 251 300 ENSP00000362115/1-913 ---------- --GGSNFDGL RPNGKGVPMD QSSRGQDKPE SLQPRQNKSK ENSBTAP00000033176/1-1005 GSRERDSAGL AGGGSSSDEL RPNGKGLPVD QSSWGQNKPE NSLSRQNKSK ENSTTRP00000012840/1-995 XXXXXXXXXX XXXGSSFDES RQDGKGLLVD QSSWGQDKPE NLLPRQNKSK bmy_02114T0/1-745 ---------- DAGDSSFDES RPDGKGLLVD RSSRGQNKPE NLLPRQNKPK BACU009692/1-965 ---------- KIGDSSFDES RPDGKGLLVD RSSRGQDKPE NLLPRQNKSK 301 350 ENSP00000362115/1-913 SEITDMVRSS TITVSDKAHI LSMQKFGLRD TIVKSHLLQK EEDYTYIQNF ENSBTAP00000033176/1-1005 SEISNMVRSS TITVSDKAHI LSMQKFGLRD TIVKSHLIQK EEDYTYIQNF ENSTTRP00000012840/1-995 SDITDMVRSS TITVSDKAHI LSMQKFGLRD TIVKSHLMQK EEDYTYIQNF bmy_02114T0/1-745 SEITDMVRSS TVTVSDKAHI LSMQKFGLRD TIVKSHLMQK EEDYTYIQNF BACU009692/1-965 SEITDMVRSS TVTVSDKAHI LSMQKFGLRD TIVKSHLMQK EEDYTYIQNF 351 400 ENSP00000362115/1-913 RFFAGTYNVN GQSPKECLRL WLSNGIQAPD VYCVGFQELD LSKEAFFFHD ENSBTAP00000033176/1-1005 RFFVGTYNVN GQSPKECLRP WLSHDTQAPD VYCVGFQELD LSKEAFFFHD ENSTTRP00000012840/1-995 RFFVGTYNVN GQSPKECLQP WLSHGIQAPD VYCVGFQELD LSKEAFFFHD bmy_02114T0/1-745 RFFVGTYNVN GQSPKECLRP WLSHGIQAPD VYCVGFQELD LSKEAFFFHD BACU009692/1-965 RFFVGTYNVN GQSPKECLRP WLSHGIQAPD VYCVGFQELD LSKEAFFFHD 401 450 ENSP00000362115/1-913 TPKEEEWFKA VSEGLHPDAK YAKVKLIRLV GIMLLLYVKQ EHAAYISEVE ENSBTAP00000033176/1-1005 TPKEEEWFKA VSEALHPDAK YAKVKLIRLV GIMLLLYVKQ EHAAYISEVE ENSTTRP00000012840/1-995 TPKEEEWFKA VSEGLHPDAK YAKVKLIRLV GIMLLLYVKQ EHAAYISEVE bmy_02114T0/1-745 TPKEEEWFKA VSEGLHPDAK YAKVKLIRLV GIMLLLYVKQ EHAAYISEVE BACU009692/1-965 TPKEEEWFKA VSEGLHPDAK YAKVKLIRLV GIMLLLYVKQ EHAAYISEVE 451 500 ENSP00000362115/1-913 AETVGTGIMG RMGNKGGVAI RFQFHNTSIC VVNSHLAAHI EEYERRNQDY ENSBTAP00000033176/1-1005 AETVGTGIMG RMGNKGGVAI RFQFHNTSIC VVNSHLAAHT EEYERRNQDY ENSTTRP00000012840/1-995 AETVGTGIMG RMGNKGGVAI RFQFHNTSIC VVNSHLAAHT EEYERRNQDY bmy_02114T0/1-745 VETVGTGIMG RM-------- ---FHNTSIC VVNSHLAAHT EEYERRNQDY BACU009692/1-965 VETVGTGIMG RMGNKGGVAV RFQFHNTSIC VVNSHLAAHT EEYERRNQDY 501 550 ENSP00000362115/1-913 KDICSRMQFC QPDPSLPPLT ISNHDVILWL GDLNYRIEEL DVEKVKKLIE ENSBTAP00000033176/1-1005 KDICSRMQFC QVDPSLPPLT ISKHDVILWL GDLNYRIEDP DVEKVKKLIE ENSTTRP00000012840/1-995 KDICSRMQFR QVDPSLPPLT ISKHDVILWL GDLNYRIEEL DVEKVKKLIE bmy_02114T0/1-745 KDICSRMQFR QVDPSLPPLT ISKHDVILWL GDLNYRIEEL DVEKVKKLIE BACU009692/1-965 KDICSRMQFR QVDPSLPPLT ISKHDVILWL GDLNYRIEEL DVEKVKKLIE 551 600 ENSP00000362115/1-913 EKDFQMLYAY DQLKIQVAAK TVFEGFTEGE LTFQPTYKYD TGSDDWDTSE ENSBTAP00000033176/1-1005 EKAFQTLYAY DQLRAQVAAK AVFEGFSEGE LTFQPTYKYD TGSDDWDTSE ENSTTRP00000012840/1-995 EKAFQTLYAN DQLRAQVAAK AVFEGFNEGE LTFQPTYKYD TGSDDWDTSD bmy_02114T0/1-745 EKAFQTLYAN DQLRAQVAAK AVFEGFSEGE LTFQPTYKYD TGSDDWDTSE BACU009692/1-965 EKAFQTLYAN DQLRAQVAAK AVFEGFSEGE LTFQPTYKYD TGSDDWDTSE 601 650 ENSP00000362115/1-913 KCRAPAWCDR ILWKGKNITQ LSYQSHMALK TSDHKPVSSV FDIGVRVVND ENSBTAP00000033176/1-1005 KCRAPAWCDR VLWKGKNITQ LSYQSHMALK TSDHKPVSSV FDIGVRVINE ENSTTRP00000012840/1-995 KCRAPAWCDR VLWKGKNITQ LSYQSHMALK TSDHKPVSSV FDIGVRVVNE bmy_02114T0/1-745 KCRAPAWCDR VLWKGKNITQ LSYQSHMALK TSDHKPVSSV FDIGVRVVNE BACU009692/1-965 KCRAPAWCDR VLWKGKNITQ LSYQSHMALK TSDHKPVSSV FDIGVRVVNE 651 700 ENSP00000362115/1-913 ELYRKTLEEI VRSLDKMENA NIPSVSLSKR EFCFQNVKYM QLKVESFTIH ENSBTAP00000033176/1-1005 ELYRKTLEEI VRSLDKMENA NIPSVSLSKR EFCFQNVKYM HLQVESFTIR ENSTTRP00000012840/1-995 ELYRKTLEEI VRSLDKMEND SIPSVSLSKR EFCFQNVKYM QLQIESFTIR bmy_02114T0/1-745 ELYRKTLEEI VRSLDKMEND NIPSVSLSKR E----NVKYM QLQVESFTIR BACU009692/1-965 ELYRKTLEEI VRSLDKMEND NIPSVSLSKR E----NVKYM QLQVESFTIR 701 750 ENSP00000362115/1-913 NGQVPCHFEF INKPDEESYC KQWLNANPSR GFLLPDSDVE IDLELFVNKM ENSBTAP00000033176/1-1005 NGQVPCQFEF ISKPNEEFYC KQWLRASPSR GFLLPDSAIE IELELFVNKT ENSTTRP00000012840/1-995 NGQVPCQFEF INKPDEESYC KQWLSANPSR GF-LPDSAIE IELELFVNKT bmy_02114T0/1-745 NGQVPCQFEF INKPDEVSYC KQWLRANPSR GFLLPDSAIE IELELFVNKT BACU009692/1-965 NGQVPCQFEF INKPDEESYC KQWLRANPSR GFLLPDSAIE IELELFVNKT 751 800 ENSP00000362115/1-913 TATKLNSGED KIEDILVLHL DRGKDYFLSV SGNYLPSCFG SPIHTLCYMR ENSBTAP00000033176/1-1005 TATKLNSGED KIEDILVLHL ERGKDYFLSV SGNYIPSCFG SPIHTLCYMK ENSTTRP00000012840/1-995 TATKLNSGED KIEDILVLHL DRGKDYFLSV SGNYLPSCFG SPIHTLCYMK bmy_02114T0/1-745 TATKLNSGED KIEDILVLHL DRGKDYFLSV SGNYLPSCFG SPIHTLCYMK BACU009692/1-965 TATKLNSGED KIEDILVLHL DRGKDYFLSV SGNYLPSCFG SPIHTLCYMK 801 850 ENSP00000362115/1-913 EPILDLPLET ISELTLMPVW TGDDGSQLDS PMEIPKELWM MVDYLYRNAV ENSBTAP00000033176/1-1005 EPILDLPLET IRELTLMQLQ TEDNGSQLEK PMDIPKELWI LVDYLYRNAI ENSTTRP00000012840/1-995 EPILDLPLES IRELTLMQLQ TEDDGSQLER PMDIPKELLM MVDYLYRNAI bmy_02114T0/1-745 EPILDLPLET VRELTLMQLQ TEDDGSQLER PMDIPKELWM MVDYLYRNAI BACU009692/1-965 EPILDLPLET VRELTLMQLQ TEDDGSQLER PMDIPKELWM MVDYLYRNAI 851 900 ENSP00000362115/1-913 QQEDLFQQPG LRSEFEHIRD CLDTGMIDNL ---------- ---------- ENSBTAP00000033176/1-1005 QQEDLFQQPG LRSEFDHIRD CLDTGMIDNL CIL------- ---------- ENSTTRP00000012840/1-995 QQEDLFQQPG LRLEFEHIRD CLDTGMIDTL ---------- ---------- bmy_02114T0/1-745 QQEDLFQQPG LRLEFEHIRD CLDSGMIDTL CILQMFTRAR VYRHPLFLND BACU009692/1-965 QQEDLFQQPG LRLEFEHIRD CLDSGMIDNL CILQMFMHAR VY---VFVNM 901 950 ENSP00000362115/1-913 ---SASNHSV AEALLLFLES LPEPVICYST YHNCLECSGN YTASKQVIST ENSBTAP00000033176/1-1005 ------NHSV AEALLLFLES LPEPVICYSA YRNCLECSGN LAASKQVITA ENSTTRP00000012840/1-995 ---SASNHSI AEALLLFLES LPEPVICYSV YHDCLECSGN LTASKQVIAT bmy_02114T0/1-745 GPKAASNHSV AEALLLFLES LPEPVICYSV YHNCLECSGN LTA------- BACU009692/1-965 RKRAASNHSV AEALLLFLES LPEPVICYSV YHNCLECSGN LTASKQVIAT 951 1000 ENSP00000362115/1-913 LPIFHKNVFH YLMAFLRELL KNSAKNHLDE NILASIFGSL LLRNPAGHQK ENSBTAP00000033176/1-1005 LPACHRNVFT YLMAFLQELL KNSAKNHLDD NILASIFGSL LLRNPAGHQK ENSTTRP00000012840/1-995 LPACHRNVFI YLMAFLQELL KNSAKNHLDG NILASIFGSL LLRNPAGHQK bmy_02114T0/1-745 ---------- -------KLL KNSAKNHLDG NILASIFGSL LLRNPAGHQK BACU009692/1-965 LPACHRNVFI YLMAFLQELL KNSAKNHLDG NILASIFGSL LLRNPAGHQK 1001 1050 ENSP00000362115/1-913 LDMTEKKKAQ EFIHQFLCNP L--------- ENSBTAP00000033176/1-1005 LEMAEKKKAQ EFVHQFLTHP EPLSLLSYSA ENSTTRP00000012840/1-995 LEVAEKKKAQ EFIHQFLCNS P--------- bmy_02114T0/1-745 LEVAEKKKAQ EFIHQFLCNS P--------- BACU009692/1-965 LEVAEKKKAQ EFIHQFLCNS P---------