KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:41 2014 Check: 00 .. Name: bmy_02120T0/1-784 Len: 1112 Check: 6195 Weight: 1.00 Name: ENSP00000362139/1-1008 Len: 1112 Check: 9079 Weight: 1.00 Name: ENSBTAP00000033182/1-1008 Len: 1112 Check: 368 Weight: 1.00 Name: BACU009689/1-936 Len: 1112 Check: 5674 Weight: 1.00 Name: ENSTTRP00000008164/1-1007 Len: 1112 Check: 6524 Weight: 1.00 // 1 50 bmy_02120T0/1-784 MEATDA---- ---------- ---------- ---------- ---------- ENSP00000362139/1-1008 METCAGPHPL RLFLCRMQLC LALLLGPWRP GTAEE----- ---------- ENSBTAP00000033182/1-1008 METGAGPHPL RLFICLMPLC LALLLGPGRP GTAEE----- ---------- BACU009689/1-936 METGVGPHPL RLFICLMPLC LALLLGPGRP GTAEEGEETL GAWDAKIQEA ENSTTRP00000008164/1-1007 METGVGPHPL RLFICLTPLC LALLLGPGRP GTAEE----- ---------- 51 100 bmy_02120T0/1-784 ---------- ------VILL DSKASQAELG WTALPSNGWE EISGVDEHDR ENSP00000362139/1-1008 ---------- ------VILL DSKASQAELG WTALPSNGWE EISGVDEHDR ENSBTAP00000033182/1-1008 ---------- ------VILL DSKASQAELG WTALPSNGWE EISGVDEHDR BACU009689/1-936 GELGCWEKES YGETGVVILL DSKASQAELG WTALPSNGWE EISGVDEHDR ENSTTRP00000008164/1-1007 ---------- ------VTLL DSKASQADLG WTALPSNGWE EISGVDEHDR 101 150 bmy_02120T0/1-784 PIRTYQVCNV LEPNQDNWLQ TGWISRGRGQ RIFVELQFTL RDCSSIPGAA ENSP00000362139/1-1008 PIRTYQVCNV LEPNQDNWLQ TGWISRGRGQ RIFVELQFTL RDCSSIPGAA ENSBTAP00000033182/1-1008 PIRTYQVCNV LEPNQDNWLQ TGWIGRGRGQ RIFVELQFTL RDYSSIPGAA BACU009689/1-936 PIRTYQVCNV LEPNQDNWLQ TGWISRGRGQ RIFVELQFTL RDCSSIPGAA ENSTTRP00000008164/1-1007 PIRTYQVCNV LEPNQDNWLQ TGWISRGRGQ RIFVELQFTL RDCSSIPGAA 151 200 bmy_02120T0/1-784 GTCKETFNVY YLETEADLGR GHPRPGGSRP RKIDTIAADE SFTQGDLGER ENSP00000362139/1-1008 GTCKETFNVY YLETEADLGR GRPRLGGSRP RKIDTIAADE SFTQGDLGER ENSBTAP00000033182/1-1008 GTCKETFNVY YLETEADLGR GRTRPGGSRP RKIDTIAADE SFTQGDLGER BACU009689/1-936 GTCKETFNVY YLETEADLGR GHPRPGGSRP RKIDTIAADE SFTQGDLGER ENSTTRP00000008164/1-1007 GTCKETFNVY YLETEADLGR GHPRPGGSRP RKIDTIAADE SFTLGDLSER 201 250 bmy_02120T0/1-784 KMKLNTEVRE IGPLSRRGFH LAFQDVGACV ALVSVRVYYK QCRATVRGLA ENSP00000362139/1-1008 KMKLNTEVRE IGPLSRRGFH LAFQDVGACV ALVSVRVYYK QCRATVRGLA ENSBTAP00000033182/1-1008 KMKLNTEVRE IGPLSRQGFH LAFQDVGACV ALVSVRVYYK QCRATVRGLA BACU009689/1-936 KMKLNTEVRE IGPLSRRGFH LAFQDVGACV ALVSVRVYYK QCRATVRGLA ENSTTRP00000008164/1-1007 KMKL-TEVRE IGPLSRRGFH LAFQDVGACV ALVSVRVYYK QCRATVRGLA 251 300 bmy_02120T0/1-784 AFPATAAESA FSTLVEVTGT CVAHSEGEPG SPPRMHCGAD GEWLVPVGRC ENSP00000362139/1-1008 TFPATAAESA FSTLVEVAGT CVAHSEGEPG SPPRMHCGAD GEWLVPVGRC ENSBTAP00000033182/1-1008 AFPATAAESA FSTLVEVTGT CVAHSEGEPG SPPRMHCGAD GEWLVPVGRC BACU009689/1-936 AFPATAAESA FSTLVEVTGT CVAHSEGEPG SPPRMHCGAD GEWLVPVGRC ENSTTRP00000008164/1-1007 AFPATAAESA FSTLVEVTGT CVAHSEGEPG SPPRMHCGAD GEWLVPVGRC 301 350 bmy_02120T0/1-784 SCSAGFQERG DICE----GF YKVSPRRPLC SPCPEHSRAL ENASTFCVCQ ENSP00000362139/1-1008 SCSAGFQERG DFCEACPPGF YKVSPRRPLC SPCPEHSRAL ENASTFCVCQ ENSBTAP00000033182/1-1008 SCSAGFQERG DICEACPPGF YKVSPRRPLC SPCPEHSRAL ENASTFCVCQ BACU009689/1-936 SCSAGFQERG DICEACPPGF YKVSARRPLC SPCPEHSRAL ENASTFCVCQ ENSTTRP00000008164/1-1007 SCSAGFQERG DICEACPPGF YKVSPRRPLC SPCPEHSRAL ENASTFCVCQ 351 400 bmy_02120T0/1-784 DSYARSPSDP PSASCTRPPS APRDLQYSLS RSPLALRLRW LPPADSGGRS ENSP00000362139/1-1008 DSYARSPTDP PSASCTRPPS APRDLQYSLS RSPLVLRLRW LPPADSGGRS ENSBTAP00000033182/1-1008 DSYARSPTDP PSASCTRPPS APRDLQYSLS RSPLALRLRW LPPADSGGRS BACU009689/1-936 DSYARSPSDP PSASCT-LRS GSRTLHYLLS ---------- ---------- ENSTTRP00000008164/1-1007 ESYARSPSDP PSASCTXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 401 450 bmy_02120T0/1-784 DVTYSLLCLR CGREGPAGAC EPCGPRVAFV PRQAGLRERA ATLLHLRPGA ENSP00000362139/1-1008 DVTYSLLCLR CGREGPAGAC EPCGPRVAFL PRQAGLRERA ATLLHLRPGA ENSBTAP00000033182/1-1008 DVTYSLLCLR CGREGPAGAC EPCGPRVAFV PRQVGLRERA ATLLHLRPGA BACU009689/1-936 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008164/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 451 500 bmy_02120T0/1-784 RYTVRVAALN GVSGPEAAAG ATYAQVTVST GAGVXSGSRT LHYLLSAPWE ENSP00000362139/1-1008 RYTVRVAALN GVSGPAAAAG TTYAQVTVST GPG------- ------APWE ENSBTAP00000033182/1-1008 RYTVRVAALN GVSGPAAAAG ATYAQVTVST GPG------- ------APWE BACU009689/1-936 ---------- ---------- ---------- ---------- ------APWE ENSTTRP00000008164/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX------- ------XPWE 501 550 bmy_02120T0/1-784 EDEIRRDRVE PQSVSLSWRE PIPAGAPGAN GTEYEIRYYE KGHSEQTYST ENSP00000362139/1-1008 EDEIRRDRVE PQSVSLSWRE PIPAGAPGAN DTEYEIRYYE KGQSEQTYSM ENSBTAP00000033182/1-1008 EDEIRRDRVE PQSVSLSWRE PIPAGAPGAN GTEYEIRYFE KGQSEQTYST BACU009689/1-936 EDEIRRDRVE PQSVSLSWRE PIPAGAPGAN GTEYEIRYYE KGQSEQTYST ENSTTRP00000008164/1-1007 EDEIRRDRVE PQSVSLSWRE PIPAGAPGAN GTEYEIRYYE KGQSEQTYST 551 600 bmy_02120T0/1-784 VKTGEPAVTV TNLKPATRYV FQIRAASPGP SWETQSFNPS IEVQTPGEAA ENSP00000362139/1-1008 VKTGAPTVTV TNLKPATRYV FQIRAASPGP SWEAQSFNPS IEVQTLGEAA ENSBTAP00000033182/1-1008 VKTGAPAVTV TNLKPATRYV FQIRAASPGP SWETQSFNPS IEVLTPGEAT BACU009689/1-936 VKTGEPAVTV TNLKPATRYV FQIRAASPGP SWETQSFNPS IEVQTPGEAA ENSTTRP00000008164/1-1007 VKTGEPAVTV TNLKPATRYV FQIRAASPGP SWETQSFNPS IEVQTPGEVA 601 650 bmy_02120T0/1-784 SGSKDQSPAV VVTIVTISAL LVLGSVMSVL AIWRRTCSYG KGGRDAHDEE ENSP00000362139/1-1008 SGSRDQSPAI VVTVVTISAL LVLGSVMSVL AIWRRPCSYG KGGGDAHDEE ENSBTAP00000033182/1-1008 SRSKDQSPAV VVTVVTISAL LVLGSVMSVL AIWRRPCSYG KGGRDAHDEE BACU009689/1-936 SGSKDQSPAV VVTIVTISAL LVLGSVMSVL AIWRRTCSYG KGGRDAHDEE ENSTTRP00000008164/1-1007 SGSKDQSPAV VVTIVTISAL LVLGSVMSVL AIWRRTCSYG KGGRDAHDEE 651 700 bmy_02120T0/1-784 ELYFHFVEAP CLTPLSFPAF PVKVPTRRTF VDPQSCGDPL LAVHLFAKEL ENSP00000362139/1-1008 ELYFHF---- ---------- --KVPTRRTF LDPQSCGDLL QAVHLFAKEL ENSBTAP00000033182/1-1008 ELYFHF---- ---------- --KVPTRRTF VDPQSCGDPL QAVHLFAKEL BACU009689/1-936 ELYFHF---- ---------- --KVPTRRTF VDPHSCGDPL LAVHLFAKEL ENSTTRP00000008164/1-1007 ELYFHF---- ---------- --KVPTRRTF VDPQSCGDPL LAVHLFAKEL 701 750 bmy_02120T0/1-784 DAKSVTLERS LGTGKLGTQE ALKRPLHIKL DLRPPGSREG GGRGICDPAF ENSP00000362139/1-1008 DAKSVTLERS LGGG------ ---------- ---------- ---------- ENSBTAP00000033182/1-1008 DAKSVTLEKS LGTG------ ---------- ---------- ---------- BACU009689/1-936 DAKSVTLERS LGTGR----- ---------- ---------- ---------- ENSTTRP00000008164/1-1007 DAKSVTLERS LGTG------ ---------- ---------- ---------- 751 800 bmy_02120T0/1-784 LPFACPQGRF GELCFGCLQL PGRQELPVAV HTLREGCSDL QRLSFLAEAL ENSP00000362139/1-1008 --------RF GELCCGCLQL PGRQELLVAV HMLRDSASDS QRLGFLAEAL ENSBTAP00000033182/1-1008 --------RF GELCCGCLQL PGRQELPVAV HTLREGCSDS QRLSFLAEAL BACU009689/1-936 --------RF GELCFGCLQL PGRQELPVAV HTLREGCSDL QRLSFLAEAL ENSTTRP00000008164/1-1007 --------RF GELCFGCLQL PGRQELPVAV HTLREGCSDL QRLSFLAEAL 801 850 bmy_02120T0/1-784 TLGQFDHSHV VRLEGVVTRG RA-------- ---------- ---------- ENSP00000362139/1-1008 TLGQFDHSHI VRLEGVVTRG STLMIVTEYM SHGALDGFLR RHEGQLVAGQ ENSBTAP00000033182/1-1008 TLGQFDHSHV VRLEGVVTRG STLMIVIEYM SHGALDGFLR RHEGQLVAAQ BACU009689/1-936 TLGQFDHSHV VRLEGVVTRG STLMIITEYM SHGALDGFLR RHEGQLVAVQ ENSTTRP00000008164/1-1007 TLGQFDHSHV VRLEGVVTRG STLMIVTEYM SHGALDGFLR RHEGQLVTVQ 851 900 bmy_02120T0/1-784 ---------- ---------- ---------- ---------- ---------- ENSP00000362139/1-1008 LMGLLPGLAS AMKYLSEMGY VHRGLAARHV LVSSDLVCKI SGFGRGPRDR ENSBTAP00000033182/1-1008 LMGLLPGLAS AMKYLSEMGY VHRGLAARRV LVSSELVCKI SGFGRGPRDR BACU009689/1-936 LMGLLPGLAS AMTYLSEMGY VHRGLAARRV LVSGDLICKI SGFGRGPRDR ENSTTRP00000008164/1-1007 LMGMLPGLAS AMKYLSEMGY VHRGLAARRV LVSSDLICKI SGFGRGPRDR 901 950 bmy_02120T0/1-784 ---------- HAPPVWE--- ---------- ---------- -------ERM ENSP00000362139/1-1008 SEAVYTTMSG RSPALWAAPE TLQFGHFSSA SDVWSFGIIM WEVMAFGERP ENSBTAP00000033182/1-1008 AEAVYTTMSG RSPALWAAPE TLQFGHFSSA SDVWSFGVVM WEVMAFGERP BACU009689/1-936 AEAVYTTMSG RSPALWAAPE TLQFGHFSSA SDVWSFGVVM WEVMAFGERP ENSTTRP00000008164/1-1007 AEAVYTTMSG RSPALWAAPE TLQFGHFSSA SDVWSFGVVM WEVMAFGERP 951 1000 bmy_02120T0/1-784 GWEV------ ---------- ---------- ---------- ---------- ENSP00000362139/1-1008 YWDMSGQDVI KAVEDGFRLP PPRNCPNLLH RLMLDCWQKD PGERPRFSQI ENSBTAP00000033182/1-1008 YWDMSGQDVI KAVEDGFRLP PPRNCPSPLH RLMLDCWQKD PGERPRFSQI BACU009689/1-936 YWDMSGQDVI KAVEDGFRLP PPRHCPSPLH RLMLDCWQKD PGERPRFCQI ENSTTRP00000008164/1-1007 YWDMSGQDVI KAVEDGFRLP PPRHCPSPLH RLMLDCWQKD PGERPRFCQI 1001 1050 bmy_02120T0/1-784 -----EVCHA PRPSAQS--- ---------- ---------- ---------- ENSP00000362139/1-1008 HSILSKMVQD PEPPKCALTT CPRPPTPLAD RAFSTFPSFG SVGAWLEALD ENSBTAP00000033182/1-1008 HGLLSKMMQD PEPPRCADTT CARPPTPLED RAFSTFPSFG SVGAWLEALD BACU009689/1-936 HGLLSKMVQD PEPPKCADTT CARPPTPLAD RAFSTFPSFC SVGAWLEALD ENSTTRP00000008164/1-1007 HGLLSKMVQD PEPPTCADST CPRPPTPLAD RAFSTFPSFG SVGAWLEALD 1051 1100 bmy_02120T0/1-784 ---------- ---------- ---------- ---------- ---------- ENSP00000362139/1-1008 LCRYKDSFAA AGYGSLEAVA EMTAQDLVSL GISLAEHREA LLSGISALQA ENSBTAP00000033182/1-1008 LGRYKDSFAA AGYGSLEAVA AMTAQDLVSL GISSAEHRED LLSGISALRA BACU009689/1-936 LGRYKDSFAA AGYGSLEAVA TMTAQDLVSL GISSVEHRED LLSGISALRA ENSTTRP00000008164/1-1007 LGRYKDSFAA AGYGSLEAVA AMTAQDLVSL GISSVEHRED LLSGISALRA 1101 1150 bmy_02120T0/1-784 ---------- -- ENSP00000362139/1-1008 RVLQLQGQGV QV ENSBTAP00000033182/1-1008 RVLQLQGRGV QV BACU009689/1-936 RVLQLQGRGV QV ENSTTRP00000008164/1-1007 RVLQLQGRGV QV