KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:02 2014 Check: 00 .. Name: ENSP00000236495/1-706 Len: 744 Check: 5396 Weight: 1.00 Name: ENSBTAP00000033208/1-681 Len: 744 Check: 371 Weight: 1.00 Name: BACU000286/1-712 Len: 744 Check: 2305 Weight: 1.00 Name: ENSTTRP00000011722/1-695 Len: 744 Check: 8393 Weight: 1.00 Name: bmy_00885T0/1-451 Len: 744 Check: 625 Weight: 1.00 // 1 50 ENSP00000236495/1-706 MSKELAAMGP GASGDGVRTE TAPHIALDSR VGLHAYDISV VVIYFVFVIA ENSBTAP00000033208/1-681 MSTELAAMGP GASGSGVSTA TVPRSAPGPR GSLHAYDIAV LVVYFVFVIG BACU000286/1-712 -------MGP GASGTGVSTA TVPRSALGPG VSLHAYDIAV LVVYFVFVIG ENSTTRP00000011722/1-695 -------MGP GTSGNGASTA TVPRSAPGPG GSLHAYDIAV LVVYFVFVIG bmy_00885T0/1-451 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000236495/1-706 VGIWSSIRAS RGTIGGYFLA GRSMSWWPIG ASLMSSNVGS GLFIGLAGTG ENSBTAP00000033208/1-681 VGVWSSIRAS RGTIGGYFLA GRSMSWWPIG ASLMSSNVGS GLFIGLAGTG BACU000286/1-712 VGVWSSIRAT RGTIGGYFLA GRSMSWWPIG ASLMSSNVGS GLFIGLAGTG ENSTTRP00000011722/1-695 VGIWSSIRAS RGTIGGYFLA GRSISWWPIG ASLMSSNVGS GLFIGLAGTG bmy_00885T0/1-451 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000236495/1-706 AAGGLAVGGF EWNMRKSRSG GDRGIHPRSH GRTGVRSQAT WLLLALGWVF ENSBTAP00000033208/1-681 AAGGLAVGGF EWN------- ---------- --------AT WLLLALGWIF BACU000286/1-712 AAGGLAVGGF EWN------- ---------- --------AT WLLLALGWIF ENSTTRP00000011722/1-695 AAGGLAVGGF EWNMRKPKPG GPH----QRS HRTEIRPVAT WLLLALGWIF bmy_00885T0/1-451 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000236495/1-706 VPVYIAAGVV TMPQYLKKRF GGQRIQVYMS VLSLILYIFT KISTDIFSGA ENSBTAP00000033208/1-681 VPVYIAAGVV TMPQYLKKRF GGQRIQVYMS VLSLILYIFT KISTDIFSGA BACU000286/1-712 VPVYIAAGVV TMPQYLKKRF GGQRIQVYMS VLSLILYIFT KISTDIFSGA ENSTTRP00000011722/1-695 VPVYIAAGVV TMPQYLKKRF GGQRIQVYMS LLSLILYIFT KISTDIFSGA bmy_00885T0/1-451 ---------- -MPQYLKKRF GGQRIQVYMS VLSLILYIFT KISTDIFSGA 201 250 ENSP00000236495/1-706 LFIQMALGWN LYLSTGILLV VTAVYTIAGG LMAVIYTDAL QTVIMVGGAL ENSBTAP00000033208/1-681 LFIQMALGWN LYLSTVTLLV VTAVYTITGG LTAVIYTDTL QTVIMVGGAL BACU000286/1-712 LFIQMALGWN LYLSTVILLV VTAVYTITGG LTAVIYTDTL QTVIMVGGAL ENSTTRP00000011722/1-695 LFIQMALGWN LYLSTVILLV VTAVYTITGG LTAVIYTDTL QTVIMVGGAL bmy_00885T0/1-451 LFIQMALGWN LYLSTVILLV VTAIYTITGG LTAVIYTDTL QTVIMVGGAL 251 300 ENSP00000236495/1-706 VLMFLGFQDV GWYPGLEQRY RQAIPNVTVP NTTCHLPRPD AFHILRDPVS ENSBTAP00000033208/1-681 VLMFLGFQEV GWYPGLEERY RQALPNVTVP NTTCHLPRPD AFHMFRDPVR BACU000286/1-712 VLMFLGFQEV GWYPGLEQRY RQAIPNVTVP NTTCHLPKPD AFHMLRDPVS ENSTTRP00000011722/1-695 VLMFLGFQEV GWYPGLEQRY RQAIPNVTVP NTTCHLPRPD AFHMLRDPVS bmy_00885T0/1-451 VLMFLGFQEV GWYPGLEQRY RQAIPNVTVP NTTCHLPKPD AFHMLRDPVS 301 350 ENSP00000236495/1-706 GDIPWPGLIF GLTVLATWCW CTDQVIVQRS LSAKSLSHAK GGSVLGGYLK ENSBTAP00000033208/1-681 GDLPWPGLIF GLTVLATWCW CTDQVIVQRS LSAKSLSHAK GGSILGGYLK BACU000286/1-712 GDIPWPGLIF GLTVLATWCW CTDQVIVQRS LSAKSLSHAK GGSVLGGYLK ENSTTRP00000011722/1-695 GDIPWPGLIF GLTVLATWCW CTDQVIVQRS LSAKSLSHAK GGSVLGGYLK bmy_00885T0/1-451 GDIPWPGLIF GLTVLATWCW CTDQVIVQRS LSAKSLSHAK GGSVLGGYLK 351 400 ENSP00000236495/1-706 ILPMFFIVMP GMISRALFPD EVGCVDPDVC QRICGARVGC SNIAYPKLVM ENSBTAP00000033208/1-681 ILPMFFIVMP GMISRALYPD EVGCVDPDVC QAICGARVGC SNIAYPKLVI BACU000286/1-712 ILPMFFIVMP GMISRALYPD EVGCVDPDIC QRICGARVGC SNIAYPKLVM ENSTTRP00000011722/1-695 ILPMFFIVMP GMISRALYPD EVGCVDPDIC QRICGARVGC SNIAYPKLVM bmy_00885T0/1-451 ILPMFFIVMP GMISRALYPD EVGCVDPDVC QRICGARVGC SNIAYPKLVM 401 450 ENSP00000236495/1-706 ALMPVGLRGL MIAVIMAALM SSLTSIFNSS STLFTIDVWQ RFRRKSTEQE ENSBTAP00000033208/1-681 ALMPVGLRGL MIAVIMAALM SSLTSIFNSS STLFAIDVWQ RFRKNATEQE BACU000286/1-712 ALMPVGLRGL MIAVIMAALM SSLTSIFNSS STLFAIDVWQ RFRRQATEQE ENSTTRP00000011722/1-695 ALMPMGLRGL MIAVIMAALM SSLTSIFNSS STLFAIDVWQ HFRRQATEQE bmy_00885T0/1-451 ALMPVGLRGL MIAVIMAALM SSLTSIFNSS STLFAIDVWQ RFRRQATEQE 451 500 ENSP00000236495/1-706 LMVVGRVFVV FLVVISILWI PIIQSSNSGQ LFDYIQAVTS YLAPPITALF ENSBTAP00000033208/1-681 LMVVGRVFVV FLVVISILWI PIIQSSNSGQ LFDYIQSVTS YLAPPITALF BACU000286/1-712 LMVVGRVFVV FLVVISILWV PIIQISNSGQ LFDYIQSVTS YLAPPITALF ENSTTRP00000011722/1-695 LMVVGRVFVV LLVVVSILWV PIIQSSNSGQ LFDYIQSVTS YLAPPITALF bmy_00885T0/1-451 LMVVGRVFVV FLVVISILWV PIIQISNSGQ LFDYIQSVTS YLAPPITALF 501 550 ENSP00000236495/1-706 LLAIFCKRVT EPGAFWGLVF GLGVGLLRMI LEFSYPAPAC GEVDRRPAVL ENSBTAP00000033208/1-681 LLAIFCKRVT EPGAFWGLLF GLVVGLLRMI LEFCYPAPAC GEEDRRPAVL BACU000286/1-712 LLAIFCKRVT EPGAFWGLIF GLVVGLLRMI LEFSYPAPAC GEADPRPAVL ENSTTRP00000011722/1-695 LLAIFCKRVT EPGAFWGLIF GLVVGLLRMT LEFSYPAPAC GEADPRPAVL bmy_00885T0/1-451 LLAIFCKRVT EPGAFWGLIF GLVVGLLRMI LEFSYPAPAC GEADPRPAVL 551 600 ENSP00000236495/1-706 KDFHYLYFAI LLCGLTAIVI VIVSLCTTPI PEEQ------ ---------- ENSBTAP00000033208/1-681 KDFHYLYFAL LLCGLTTIVI VAVSLCTAPI PEEK------ ---------- BACU000286/1-712 KDFHYLYFAL LLCGLTAIVI VTVSLCTTPI PEEKASGVFG TRPPPSVPLP ENSTTRP00000011722/1-695 KDFHYLYFAL LLCGLTAIVI VTVSLCTAPI PEEK------ ---------- bmy_00885T0/1-451 KNFHYLYFAL LLCGLTAIVI VTVSLCTTPI PEEK------ ---------- 601 650 ENSP00000236495/1-706 ---------- ---------- --LTRLTWWT RNCPLSELEK EAHESTPEIS ENSBTAP00000033208/1-681 ---------- ---------- --LARLTWWT RHHPLSELEK EPPESTAGTA BACU000286/1-712 TVPGIPPSTF TPLSCGHRWL GTLARLTWWT RHCPPSELEK EVQESTAGTA ENSTTRP00000011722/1-695 ---------- ---------- --LARLTWWT LDGPHSELKR EARESTAGTA bmy_00885T0/1-451 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000236495/1-706 ERPAGECPAG GGAAENSSLG QEQPEAPSRS WGKLLWSWFC GLSGTPEQAL ENSBTAP00000033208/1-681 EVASGEGPTG ARGAEDPGQG QEQPGAPRRS WGQWLWRWLC GLSGAPEQAL BACU000286/1-712 DMPSGEGPTG AGGTENPRHG QEQPAAPRRS WGQLLWGWLC GLSRAPEQAL ENSTTRP00000011722/1-695 DVPSGEGPTG AGGTENPRHG QEQPAAPRRS WGQLLWGWLC GLSRAPEQAL bmy_00885T0/1-451 -------ASG VLGTXPPQ-- ---------- ---------- ---------V 701 750 ENSP00000236495/1-706 SPAEKAALEQ KLTSIEEEPL WRHVCNINAV LLLAINIFLW GYFA ENSBTAP00000033208/1-681 SPVEKAALEQ KLTSIAEEPL WRSVCNINAV LLLAVNVFLW GYFA BACU000286/1-712 SPAEKAALEQ KLTSIEEEPL WRSVCNVNAI LLLAVNIFLW GYFA ENSTTRP00000011722/1-695 SPAEKAALEQ KLTSIQEEPL WRSVCNINAV LLLAVNIFLW GYFA bmy_00885T0/1-451 FP-------- ---------- YPQCLEFHHR LLLH------ ----