KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:04 2014 Check: 00 .. Name: BACU000331/1-783 Len: 1248 Check: 355 Weight: 1.00 Name: ENSTTRP00000003183/1-1205 Len: 1248 Check: 428 Weight: 1.00 Name: bmy_19784T0/1-1175 Len: 1248 Check: 8879 Weight: 1.00 Name: ENSP00000361266/1-1203 Len: 1248 Check: 9139 Weight: 1.00 Name: ENSBTAP00000033224/1-1207 Len: 1248 Check: 1016 Weight: 1.00 // 1 50 BACU000331/1-783 ---------- MPPL------ ---------- ---------- ---------- ENSTTRP00000003183/1-1205 -------MAR PPPLGELPPG YTPPARSAAP QILAGSLQAP LWLRAYFQGL bmy_19784T0/1-1175 MPPIPASMAR PPPLGELPPG YTPPARSAAP QILAGSLQAP LWLRAYFQGL ENSP00000361266/1-1203 -------MTR SPPLRELPPS YTPPARTAAP QILAGSLKAP LWLRAYFQGL ENSBTAP00000033224/1-1207 -------MAR PPPLGELPPG YTPPGRPATP QILAGSLKAP LWLRAYFQGL 51 100 BACU000331/1-783 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003183/1-1205 LFSLGCGIQR HCGKVLFLGL LAFGALALGL RVAIIETDLE QLWVEAGSRV bmy_19784T0/1-1175 LFSLGCGIQR HCGKVLFLGL LAFGALALGL RVAIIETDLE QLWVEAGSRV ENSP00000361266/1-1203 LFSLGCGIQR HCGKVLFLGL LAFGALALGL RMAIIETNLE QLWVEVGSRV ENSBTAP00000033224/1-1207 LFSLGCGIQR HCGKVLFLGL LAFGALALGL RVAIIETDLE QLWVEVGSRV 101 150 BACU000331/1-783 ---------- ---------- -----PR--- ---------- ---------- ENSTTRP00000003183/1-1205 SQELQYTKEK LGEEAAYTSQ MLIQTPRQEG ENVLTPEALG LHLQAALTAS bmy_19784T0/1-1175 SQELQYTKEK LGEEAAYTSQ MLIQTPRQEG ENVLTPEALG LHLQAALTAS ENSP00000361266/1-1203 SQELHYTKEK LGEEAAYTSQ MLIQTARQEG ENILTPEALG LHLQAALTAS ENSBTAP00000033224/1-1207 SQELEYTKEK LGEEAAYTSQ MLIQTPRQEG ENVLTPEALD LHLQAALTAS 151 200 BACU000331/1-783 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003183/1-1205 KVQVSLYGKS WDLNKICYKS GVPLIENGMI ERMIEKLFPC VILTPLDCFW bmy_19784T0/1-1175 KVQVSLYGKS WDLNKICYKS GVPLIENGMI ERMIEKLFPC VILTPLDCFW ENSP00000361266/1-1203 KVQVSLYGKS WDLNKICYKS GVPLIENGMI ERMIEKLFPC VILTPLDCFW ENSBTAP00000033224/1-1207 KVQVSLYGKS WDLNKICYKS GVPLIENGMI ERMIEKLFPC VILTPLDCFW 201 250 BACU000331/1-783 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003183/1-1205 EGAKLQGGSA YLPGRPDIQW TNLDPEQLLE ELGPFASLEG FRELLDKAQV bmy_19784T0/1-1175 EGAKLQGGSA YLPGRPDIQW TNLDPEQLLE ELGPFASLEG FRELLDKAQV ENSP00000361266/1-1203 EGAKLQGGSA YLPGRPDIQW TNLDPEQLLE ELGPFASLEG FRELLDKAQV ENSBTAP00000033224/1-1207 EGAKLQGGSA YLPGRPDIQW TNLDPEQLLA ELGPFASLEG FRELLDKAQV 251 300 BACU000331/1-783 --------C- ------CPS- ---------- ---------- -------WHW ENSTTRP00000003183/1-1205 GQAYVGRPCL HPDDLHCPSS APNHHSRQXX XXXXXXXXXX XXXXXXXXXX bmy_19784T0/1-1175 GQAYVGRPCL RPDDLHCPSS APNHHSRQAP NVAQELSGGC HGFSHKFMHW ENSP00000361266/1-1203 GQAYVGRPCL HPDDLHCPPS APNHHSRQAP NVAHELSGGC HGFSHKFMHW ENSBTAP00000033224/1-1207 GQAYVGRPCL HPDDLHCPPS APNHHSRQAP NVAQELSGGC HGFSHKFMHW 301 350 BACU000331/1-783 A--------- ---------- ---------- ---------- -------LAW ENSTTRP00000003183/1-1205 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19784T0/1-1175 QEELLLGGLA RDPRGQLLRA EALQSTFLLM SPRQLYEHFR GDYQTHDIGW ENSP00000361266/1-1203 QEELLLGGMA RDPQGELLRA EALQSTFLLM SPRQLYEHFR GDYQTHDIGW ENSBTAP00000033224/1-1207 QEELLLGGMA RDPQGQLLRA EALQSTFLLM SPRQLYEHFR GDYQTHDIGW 351 400 BACU000331/1-783 ---------- ---------- ---------- ---------- ----MTYSXX ENSTTRP00000003183/1-1205 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19784T0/1-1175 SEEQAGTVLQ AWQRRFVQLA QEALPGNASQ QIHAFSSTTL DDILHAFSEV ENSP00000361266/1-1203 SEEQASTVLQ AWQRRFVQLA QEALPENASQ QIHAFSSTTL DDILHAFSEV ENSBTAP00000033224/1-1207 SEEQAGTVLQ AWQRRFVQLA QEALPENASQ QIHAFSSTTL DDILHAFSEV 401 450 BACU000331/1-783 XXXXXXXXXX XXXXXXXXXX XXXXX----- ---------- ---------- ENSTTRP00000003183/1-1205 XXXXXXXXXX XXXXXXXVTM LRWDCVQSQG AVGLAGVLLV TLAVASGLGL bmy_19784T0/1-1175 SAARVVGGYL LMLAYACVTM LRWDCAQSQG AVGLAGVLLV ALAVASGLGL ENSP00000361266/1-1203 SAARVVGGYL LMLAYACVTM LRWDCAQSQG SVGLAGVLLV ALAVASGLGL ENSBTAP00000033224/1-1207 SAARVVGGYL LMLAYACVTM LRWDCAQSQG AVGLAGVLLV ALAVASGLGL 451 500 BACU000331/1-783 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003183/1-1205 CALLGIAFNA ATT------- ---------- ---------- -QVLPFLALG bmy_19784T0/1-1175 CALLGIAFNA ATTQVHQDCG ADLGADGPGC SVPPAARPVP LQVLPFLALG ENSP00000361266/1-1203 CALLGITFNA ATT------- ---------- ---------- -QVLPFLALG ENSBTAP00000033224/1-1207 CALLGIAFNA ATT------- ---------- ---------- -QVLPFLALG 501 550 BACU000331/1-783 ------FLLA HAFTEAPPGT PLQERTGECL QRTGTSVALT SINNMVAFFM ENSTTRP00000003183/1-1205 IGVDDIFLLA HAFTEAPPGT PLQERTGECL QRTGTSVALT SINNMVAFFM bmy_19784T0/1-1175 IGVDDIFLLA HAFTEAPPGT P--------- ---------- ---------- ENSP00000361266/1-1203 IGVDDVFLLA HAFTEALPGT PLQERMGECL QRTGTSVVLT SINNMAAFLM ENSBTAP00000033224/1-1207 IGVDDIFLLA HAFTEAPPGS PLQERTGECL RRTGTSVTLT SINNMVAFFM 551 600 BACU000331/1-783 AALVPIPALR AFSLQAAVVV GCNFAAVMLV FPAVLSLDLH RRHCQRLDVL ENSTTRP00000003183/1-1205 AALVPIPALR AFSLQAAVVV GCNFAAVMLV FPAVLSLDLH RRHCQRLDVL bmy_19784T0/1-1175 ---------- ---LQAAVVV GCNFAAVMLV FPAVLSLDLH RRHCQRLDVL ENSP00000361266/1-1203 AALVPIPALR AFSLQAAIVV GCTFVAVMLV FPAILSLDLR RRHCQRLDVL ENSBTAP00000033224/1-1207 AALVPIPALR AFSLQAAIVV GCNFAAVMLV FPAVLSLDLR RRHCRRLDVL 601 650 BACU000331/1-783 CCFSSPCSAR VIQILPQELG DRTVPVGIAH LTATVQAFAH CEASSQHVVT ENSTTRP00000003183/1-1205 CCFSSPCSAR VIQILPQELG DRTVPVGIAH LTATVQAFAH CEASSQHVVT bmy_19784T0/1-1175 CCFSSPCSAR VIQILPQELG DRTVSVGIAH LTATVQAFAH CEASSQHVVT ENSP00000361266/1-1203 CCFSSPCSAQ VIQILPQELG DGTVPVGIAH LTATVQAFTH CEASSQHVVT ENSBTAP00000033224/1-1207 CCFSSPCSAR VIQILPQELG NGTVPVGVAH LTATVQAFAH CEASSQHVVT 651 700 BACU000331/1-783 ILPPQAHLVP PPSDPLASEL FSPGGSTRDL LGQEEGTRQK AACKSLACAR ENSTTRP00000003183/1-1205 ILPPQAHLVP PPSDPLASEL FSPGGSTRDL LGQEEGTRQK AACKSLPCAR bmy_19784T0/1-1175 ILPPQAHLVP PPSDPLASEL FSPGGSTRDL LGQEEGTRQK AACKSLACAR ENSP00000361266/1-1203 ILPPQAHLVP PPSDPLGSEL FSPGGSTRDL LGQEEETRQK AACKSLPCAR ENSBTAP00000033224/1-1207 ILPPQAQLVP PPSDPLGSEL FSPGGSTRDL LGQEEGTGQK AACKSLPCAR 701 750 BACU000331/1-783 WNLAHFARSQ FAPLLLQSHT KAMVLVLFGA LLGLSLYGST LVQDGLALTD ENSTTRP00000003183/1-1205 WNLAHFARSQ FAPLLLQSHT KAMVLVLSGA LLGLSLYGST LVQDGLALTD bmy_19784T0/1-1175 WNLAHFARSQ FAPLLLQSHT KAMVLVLFGA LLGLSLYGST LVQDGLALTD ENSP00000361266/1-1203 WNLAHFARYQ FAPLLLQSHA KAIVLVLFGA LLGLSLYGAT LVQDGLALTD ENSBTAP00000033224/1-1207 WNLAHFARSQ FAPLLLQSHT KAVVLVLFGA LLGLSLYGAT LVQDGLALTD 751 800 BACU000331/1-783 VVPRGTKEHA FLSAQLRYFS LYEVALVTQG GFDYAHSQRA LFDLHQRFSS ENSTTRP00000003183/1-1205 VVPRGTKEHA FLSAQLRYFS LYEVALVTQG GFDYAHSQRA LFDLHQRFSS bmy_19784T0/1-1175 VVPRGTKEHA FLSAQLRYFS LYEVAVVTQG GFDYAHSQRA LFDLHQRFSS ENSP00000361266/1-1203 VVPRGTKEHA FLSAQLRYFS LYEVALVTQG GFDYAHSQRA LFDLHQRFSS ENSBTAP00000033224/1-1207 VVPRGTKEHA FLSAQLRYFS LYEVALVTQG GFDYAHSQRA LFDLHQRFSS 801 850 BACU000331/1-783 LKAVLPPPAT QAPRTWLHYY RNWLQGIQAA FDQDWASGHI TRHSYRNGSE ENSTTRP00000003183/1-1205 LKAVLPPPAT QAPRTWLHYY RNWLQGIQAA FDQDWASGRI THHSYRNGSE bmy_19784T0/1-1175 LKAVLPPPAT QAPRTWLHYY RNWLQGIQAA FDQDWASGRI TRHSYRNGSE ENSP00000361266/1-1203 LKAVLPPPAT QAPRTWLHYY RNWLQGIQAA FDQDWASGRI TRHSYRNGSE ENSBTAP00000033224/1-1207 LKAVLPPPAT QAPRTWLHYY RSWLQGIQAA FDQDWASGRI TRHSYRNGSE 851 900 BACU000331/1-783 DGALAYKLLI QTGDAQEPLD FSQLTTRKLV DKDGLIPPEL FYMGLTMWVS ENSTTRP00000003183/1-1205 DGALAYKLLI QTGDAQEPLD FSQLTTRKLV DKDGLIPPEL FYVGLTVWVS bmy_19784T0/1-1175 DGALAYKLLI QTGDAQEPLD FSQLTTRKLV DKDGLIPPEL FYMGLTMWVS ENSP00000361266/1-1203 DGALAYKLLI QTGDAQEPLD FSQLTTRKLV DREGLIPPEL FYMGLTVWVS ENSBTAP00000033224/1-1207 DGALAYKLLV QTGDAQEPLD FSQLTTKKLV DKEGLIPPEL FYMGLTVWVS 901 950 BACU000331/1-783 SDPLGLAASQ ANFYPPPPEW LHDKYDTTGE NLRIPAAQPL EFAQFPFLLR ENSTTRP00000003183/1-1205 SDPLGLAASQ ANFYPPPPEW LHDKYDTTGE NLRIPAAQPL EFAQFPFLLH bmy_19784T0/1-1175 SDPLGLAASQ ANFYPPPPEW LHDMYDTTGE NLRIPAAQPL EFAQFPFLLR ENSP00000361266/1-1203 SDPLGLAASQ ANFYPPPPEW LHDKYDTTGE NLRIPPAQPL EFAQFPFLLR ENSBTAP00000033224/1-1207 SDPLGLAASQ ANFYPPPPEW LHDKYDTTGE NLRIPAAQPL EFAQFPFLLR 951 1000 BACU000331/1-783 GLQKTADFVE TIEGARAACA EAGRAGVRAY PSGSPFLFWE QYLGLRRCFL ENSTTRP00000003183/1-1205 GLQKTADFVE TIEGARAACA EAGQAGVHAY PSGSPFLFWE QYLGLRRCFL bmy_19784T0/1-1175 GLQKTADFVE TIEGARAACA EAGRAGVRAY PSGSPFLFWE QYLGLRRCFL ENSP00000361266/1-1203 GLQKTADFVE AIEGARAACA EAGQAGVHAY PSGSPFLFWE QYLGLRRCFL ENSBTAP00000033224/1-1207 GLQKTADFVE AIEGARAACA EASQAGVHAY PSGSPFLFWE QYLGLRRCFL 1001 1050 BACU000331/1-783 LAVCILLVCT FLVCALLLLN PWAASLIVLV LAVMTVELFG IMGFLGIKLS ENSTTRP00000003183/1-1205 LAVCILLVCT FLVCALLLLN PWAASLIVLV LAVMTVELFG IMGFLGIKLS bmy_19784T0/1-1175 LAVCILLVCT FLVCALLLLN PWAASLIVLV LAVMTVELFG IMGFLGIKLS ENSP00000361266/1-1203 LAVCILLVCT FLVCALLLLN PWTAGLIVLV LAMMTVELFG IMGFLGIKLS ENSBTAP00000033224/1-1207 LAVCILLLCT FLVCALLLLN PWTAALIVLV LAMMTVELFG IMGFLGIKLS 1051 1100 BACU000331/1-783 AIPVVILVAS VGIGVEFTVH VALGFLTSQG SRNLRAARAL EHTLAPVTDG ENSTTRP00000003183/1-1205 AIPVVILVAS VGIGVEFTVH VALGFLTSQG SRNLRAARAL EHTLAPVTDG bmy_19784T0/1-1175 AIPVVILVAS VGIGVEFT-- ---GFLTSQG SRNLRAARAL EHTLAPVTDG ENSP00000361266/1-1203 AIPVVILVAS VGIGVEFTVH VALGFLTTQG SRNLRAAHAL EHTFAPVTDG ENSBTAP00000033224/1-1207 AIPVVILVAS IGIGVEFTVH VALGFLTAQG SRNLRAARAL ERTFAPVTDG 1101 1150 BACU000331/1-783 AISTLLGLLM LAGSNFDFIV RYFFVVLTVL TLLGLLHGLV LLPVLLSILG ENSTTRP00000003183/1-1205 AVSTLLGLLM LAGSNFDFIV RYFFVVLTVL TLLGLLHGLV LLPVLLSILG bmy_19784T0/1-1175 AVSTLLGLLM LAGSNFDFIV RYFFVVLTVL TLLGLLHGLV LLPVLLSILG ENSP00000361266/1-1203 AISTLLGLLM LAGSHFDFIV RYFFAALTVL TLLGLLHGLV LLPVLLSILG ENSBTAP00000033224/1-1207 AISTLLGLLM LAGSNFDFIV RYFFVVLTIL TLLGLLHGLV LLPVLLSILG 1151 1200 BACU000331/1-783 PPPEVVQMYK ESPEVLS--- --PPAAQGGG LRWGVAPTLP QSFARVTTSM ENSTTRP00000003183/1-1205 -PPEVVQMYK ESPEVLS--- --PPAAQGGG LRWGVAPTLP QSFARVTTSM bmy_19784T0/1-1175 PPPEVTTLLL LPAQGMGWNR ARAKCPQRPT DRAQLTGTSP HKYHQLKVAA ENSP00000361266/1-1203 PPPEVIQMYK ESPEILS--- --PPAPQGGG LRWGASSSLP QSFARVTTSM ENSBTAP00000033224/1-1207 PPPEVVQMYK ESAEVLS--- --PPAPQGGG LRWGVPSTLP QSFARVTTSM 1201 1250 BACU000331/1-783 T-VALRPPPL PGAYIHPATE EPTWSPAATP AASGSSNLSS RGPCPAI- ENSTTRP00000003183/1-1205 T-VALRPPPL PGAYIHPASE EPTWSPAATP AASGSSNLSS RGPGPAT- bmy_19784T0/1-1175 SPFAQTSCPY PSALLTSS-- ---WDPP--- ---------- -------- ENSP00000361266/1-1203 T-VAIHPPPL PGAYIHPAPD EPPWSPAATS ----SGNLSS RGPGPATG ENSBTAP00000033224/1-1207 T-VALHPPPL PGAYIHPASE EPTWSPAATP AANGPSNLGP RGLCPATG