KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:05 2014 Check: 00 .. Name: ENSTTRP00000005675/1-829 Len: 908 Check: 2563 Weight: 1.00 Name: ENSP00000418734/1-828 Len: 908 Check: 1742 Weight: 1.00 Name: BACU000219/1-708 Len: 908 Check: 5098 Weight: 1.00 Name: ENSBTAP00000033239/1-831 Len: 908 Check: 9326 Weight: 1.00 Name: bmy_22438T0/1-844 Len: 908 Check: 4164 Weight: 1.00 // 1 50 ENSTTRP00000005675/1-829 MAAEEADVDI EGDVVPAA-A QSGSDENTAS VLQ-DHYLDS SWRTENGLIP ENSP00000418734/1-828 MAAEEADVDI EGDVVAAAGA QPGSGENTAS VLQKDHYLDS SWRTENGLIP BACU000219/1-708 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033239/1-831 MAAEEADVDI EGDIVPAA-A QSGSDENTAS VLQ-DHYLDS SWRTENGLIP bmy_22438T0/1-844 MAAEEADVDI EGDVVPAA-A PSGSDENTAS VLQ-DHYLDS SWRTENGLIP 51 100 ENSTTRP00000005675/1-829 WTLDSTISEE NRAVIEKMLL EEEYYLSKKS LPGKFWLDQK EDDKKYMKSL ENSP00000418734/1-828 WTLDNTISEE NRAVIEKMLL EEEYYLSKKS QPEKVWLDQK EDDKKYMKSL BACU000219/1-708 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033239/1-831 WTLDSTISEE NRAVIEKMLL EEEYYLSNKS LPGKFWLDQK EDDKKYLKSL bmy_22438T0/1-844 WTLDSTISEE NRAVIEKMLL EEEYYLSKKS LPGKFWLDQK EDDKKYMKR- 101 150 ENSTTRP00000005675/1-829 QKPAKIMVHS PTKPASYSVK WTIEEKELFE QGL------- ---------- ENSP00000418734/1-828 QKTAKIMVHS PTKPASYSVK WTIEEKELFE QGL------- ---------- BACU000219/1-708 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033239/1-831 QKTAKIMVHT PTKPASYSVK WTIEEKELFE QGL------- ---------- bmy_22438T0/1-844 -------VHS PTKPASYSVK WTIEEKELFE QGLKSRFEKK NVGFDFRSLN 151 200 ENSTTRP00000005675/1-829 --AKFGRRWT KIAKLVGSRS VLQVKSYARQ YFKNKXXXXX XXXXXXXXXX ENSP00000418734/1-828 --AKFGRRWT KISKLIGSRT VLQVKSYARQ YFKNKVKC-G LDKETPNQKT BACU000219/1-708 --AKFGRRWT KIAKLIGSRT VLQVKSYARQ YFKNKVKSDG PEKETPNQKN ENSBTAP00000033239/1-831 --AKFGRRWT KIAKLIESRT VLQVKSYARQ YFKNKVKLDG PEKETPNQKN bmy_22438T0/1-844 YIAKFGRRWT KIAKLIGSRT VLQVKSYARQ YFKNKVKSDG PEKETPNQKN 201 250 ENSTTRP00000005675/1-829 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418734/1-828 GHNLQVKNED KGTKAWTPSC LRGRADPNLN AVKIEKLSDD EEVDITDEVD BACU000219/1-708 SSGFQMKNED EGTKAWTPSG LRGRADPNWN AVKIEKLSDD EEVDITDEAD ENSBTAP00000033239/1-831 SSGFQMKNED EGTKAWTPSG LRGRADPNLN AVKIEKLSDD EEVDITDETD bmy_22438T0/1-844 SSGFQTKNED EGTKAWTPSG LRGRADPNWN AVKIEKLSDD EEVDITDEAD 251 300 ENSTTRP00000005675/1-829 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418734/1-828 ELSSQTPQKN SSSDLLLDFP NSKMHETNQG EFITSDSQEA LFSKSSRGCL BACU000219/1-708 ELTSQAPQKN LSSDLLLDIS KNKSHETSKG EFIASDSQED PISKSSKEYL ENSBTAP00000033239/1-831 ELTSQVPQKD LSSVLLLDIS NNKRPETIKA --VVSDSQED PISKSSKEYL bmy_22438T0/1-844 ELTSQAPQKN LSSDLLLDVS KNKSHETSKG EFIASDSQED PISKSSKDYL 301 350 ENSTTRP00000005675/1-829 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418734/1-828 QNEKQD--ET LSSSEITLWT EKQSNGDKKS IELNDQKFNE LIKNCNKHDG BACU000219/1-708 QNIKQDEMET LSSSGNTFWT ENHNTSDQKS VELYDQKCNK VMKNCNKHDG ENSBTAP00000033239/1-831 QNIKQGEMEA LSSSGIRLWT ENYNTSDQKL VELNDQKCDK LMKNCDKHHG bmy_22438T0/1-844 QNIKQGEMET LSSSGNTFWT ENHNTSDQKS VELYDQKCNK LMKNCNKHDG 351 400 ENSTTRP00000005675/1-829 XXXXXXXXXX X----XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418734/1-828 RGIIVDARQL PSPEPCEIQK NLNDNEMLFH S-CQMVEESH EEEELKPPEQ BACU000219/1-708 NGIIDDARQL PSPEPCEVQK DLSDNELLFH SSCQMEEESH EEEELKPPEQ ENSBTAP00000033239/1-831 NGITDDARQL PSPEPCEVQK DLSDNELLFH SSCQMEEESQ EEEELKPPEQ bmy_22438T0/1-844 NGIIDDARQL PSPEPCEVQK DLSDNELLFH SSCQMEEESH EEEELKPPEQ 401 450 ENSTTRP00000005675/1-829 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXEICKPKY ENSP00000418734/1-828 EIEIDRNIIQ EEEKQAIPEF FEGRQAKTPE RYLKIRNYIL DQWEICKPKY BACU000219/1-708 EIEIDRNVIQ EEEKQAIPEF FEGRQAKTPE RYLKIRNYIL DQWEICKPKY ENSBTAP00000033239/1-831 EIEVDRNIIQ EEEKQAIPEF FEGRQAKTPE RYLKIRNYIL DQWEICKPKY bmy_22438T0/1-844 EIEIDRNIIQ EEEKQAIPEF FEGRQAKTPE RYLKIRNYIL DQWEICKPKY 451 500 ENSTTRP00000005675/1-829 LNKTSVRPGL KNCGDVNCIG RIHTYLELIG AINFGCEQAV YNRPQPVDKV ENSP00000418734/1-828 LNKTSVRPGL KNCGDVNCIG RIHTYLELIG AINFGCEQAV YNRPQTVDKV BACU000219/1-708 LNKTSVRPGL KNCGDVNCIG RIHTYLELIG AINFGCEQAV YNRPQPVDKV ENSBTAP00000033239/1-831 LNKTSVRPGL KNCGDVNCIG RIHTYLELIG AINFGCEQAV YNRPQPVDKV bmy_22438T0/1-844 LNKTSVRPGL KNCGDVNCIG RIHTYLELIG AINFGCEQAV YNRPQPVDKV 501 550 ENSTTRP00000005675/1-829 RIRDRKDTVE AYQLAQRLQS MRTRRRRVRD PWGNWCDAKD LEGQTFEHLS ENSP00000418734/1-828 RIRDRKDAVE AYQLAQRLQS MRTRRRRVRD PWGNWCDAKD LEGQTFEHLS BACU000219/1-708 RIRDRKDTVE AYQLAQRLQS MRTRRRRVRD PWGNWCDAKD LEGQTFE--- ENSBTAP00000033239/1-831 RIRDRKDTVE AYQLAQRLQS MRTRRRRVRD PWGNWCDARD LEGQTFEHLS bmy_22438T0/1-844 RIRDRKDTVE AYQLAQRLQS MRTRRRRVRD PWGNWCDAKD LEGQTFEHLS 551 600 ENSTTRP00000005675/1-829 AEELARRREE EKCKPGKSSK VPRPTKSSFD PFQLIPCNFF SEEKQEPFQV ENSP00000418734/1-828 AEELAKRREE EKGRPVKSLK VPRPTKSSFD PFQLIPCNFF SEEKQEPFQV BACU000219/1-708 ---------- ---------- ---------- ---------- -----EPFQV ENSBTAP00000033239/1-831 AEELARRREE EKCKLSKPSK VPRPTKSSFD PFQLIPCNFF SEEKQEPFQV bmy_22438T0/1-844 AEELARRREE EKCKPGKSSK VPRPTKSSFD PFQLIPCNFF SEEKQEPFQV 601 650 ENSTTRP00000005675/1-829 KVASEALLIM DLHAHVSMAE VIGLLGGRYS EVDKIVEVCA AEPCNSLSTG ENSP00000418734/1-828 KVASEALLIM DLHAHVSMAE VIGLLGGRYS EVDKVVEVCA AEPCNSLSTG BACU000219/1-708 KVASEALLIM DLHAHVSMAE VIGLLGGRYS EVDKIVEVCA AEPCNSLSTG ENSBTAP00000033239/1-831 KVASEALLIM DLHAHVSMAE VIGLLGGRYS EADKIVEVCA AEPCNSLSTG bmy_22438T0/1-844 KVASEALLIM DLHAHVSMAE VIGLLGGRYS EVDKIVEVCA AEPCNSLSTG 651 700 ENSTTRP00000005675/1-829 LQCEMDPVSQ TQASETLAVR GYSVIGWYHS HPAFDPNPSL RDIDTQAKYQ ENSP00000418734/1-828 LQCEMDPVSQ TQASETLAVR GFSVIGWYHS HPAFDPNPSL RDIDTQAKYQ BACU000219/1-708 LQCEMDPVSQ TQASETLAVR GYSVIGWYHS HPAFDPNPSL RDIDTQAKYQ ENSBTAP00000033239/1-831 LQCEMDPVSQ TQASETLAVR GYSVIGWYHS HPAFDPNPSL RDIDTQAKYQ bmy_22438T0/1-844 LQCEMDPVSQ TQASETLAVR GYSVIGWYHS HPAFDPNPSL RDIDTQAKYQ 701 750 ENSTTRP00000005675/1-829 SYFSRGGAKF IGMIVSPYNR NNPLPYSQIT CLVISDEISP DGSYRLPYKF ENSP00000418734/1-828 SYFSRGGAKF IGMIVSPYNR NNPLPYSQIT CLVISEEISP DGSYRLPYKF BACU000219/1-708 SYFSRGGAKF IGMIVSPYNR NNPLPYSQIT CLVISDEISP DGSYRLPYKF ENSBTAP00000033239/1-831 SYFSRGGAKF IGMIVSPYNR NNPLPYSQIT CLVISDEISP DGSYRLPYKF bmy_22438T0/1-844 SYFSRGGAKF IGMIVSPYNR NNPLPYSQIT CLVISDEISP DGSYRLPYKF 751 800 ENSTTRP00000005675/1-829 EVQQMLEEPR WGLVLEKTKW IIEKYRLSRS S---VPMDKI FRR------- ENSP00000418734/1-828 EVQQMLEEPQ WGLVFEKTRW IIEKYRLSHS S---VPMDKI FRR------- BACU000219/1-708 EVQQMLEEPR WGLVFEKTKW IIEKYGLSRR KELHLTSTGL YREALALWAN ENSBTAP00000033239/1-831 EVQQMLEEPR WELVFEKTRW IIEKYRLSRS S---VPMDKI FRR------- bmy_22438T0/1-844 EVQQMLEEPR WGLVFEKTKW IIEKYGLSRS S---VPMDKI FRR------- 801 850 ENSTTRP00000005675/1-829 ---------- ----DSDLTC LQKLLECLR- ---------- --KTLSKVAN ENSP00000418734/1-828 ---------- ----DSDLTC LQKLLECMR- ---------- --KTLSKVTN BACU000219/1-708 AWQLQAQLGV PSGPDRPLLT LVGLAVCHRE LEDPGESRAR CEKALQLLGD ENSBTAP00000033239/1-831 ---------- ----DSDLTC LQKLLECLR- ---------- --KTLSKVTN bmy_22438T0/1-844 ---------- ----DSDLTC LQKLLECLR- ---------- --KTLSKVAN 851 900 ENSTTRP00000005675/1-829 ----CFIAEE FLTQIE---N LFLSNYKSQP ENGVAEEKCA V-----EPKA ENSP00000418734/1-828 ----CFMAEE FLTEIE---N LFLSNYKSNQ ENGVTEENCT --------KE BACU000219/1-708 KSPHPFLVPF LEAQVRLSWH LGLDKCQSEA QLQALQEAGL TPTPPPSPKE ENSBTAP00000033239/1-831 ----CFIAEE FLTQIE---N LFLSSYQSNP ENGVAEENCT V-----GQKE bmy_22438T0/1-844 ----CFIAEE FLTQIE---N LFLSNYKSQP ENGAAEEKCT V-----EPKA 901 950 ENSTTRP00000005675/1-829 LLT----- ENSP00000418734/1-828 LLM----- BACU000219/1-708 LLTKEVLD ENSBTAP00000033239/1-831 LLM----- bmy_22438T0/1-844 LLT-----