KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:06 2014 Check: 00 .. Name: ENSP00000384290/1-1066 Len: 1415 Check: 8340 Weight: 1.00 Name: ENSBTAP00000033255/1-1062 Len: 1415 Check: 1092 Weight: 1.00 Name: BACU000757/1-887 Len: 1415 Check: 841 Weight: 1.00 Name: ENSTTRP00000002737/1-1033 Len: 1415 Check: 2564 Weight: 1.00 Name: bmy_17386T0/1-1389 Len: 1415 Check: 9427 Weight: 1.00 // 1 50 ENSP00000384290/1-1066 MEPGKRRTKD DTWKADDLRK HLWAIQSGGS KEERKHREKK LRKESEMDLP ENSBTAP00000033255/1-1062 MEPGKRRTKD DTWKADDLRK HLWAAQSSGP KEEKQHRDRK PLRESEADLA BACU000757/1-887 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002737/1-1033 -----RRTKD DTWKEDELRK HLWAARSASP TEETRPRARK PRRESEADRA bmy_17386T0/1-1389 MEPGKRRTKD DTWKEDELRK HLWAAASARP TEETRPRAGK PRRESEADRA 51 100 ENSP00000384290/1-1066 EHKEPRCRDP DQDARSRDRV AEV--HTAKE SPRGERDRDR QRERRRDAKD ENSBTAP00000033255/1-1062 DGKEHRSRDP DREAKHRERA AERDGHAARE HPRGDRERDR RKERR----- BACU000757/1-887 ---------- ---------- ---------- ---------- --MSR----- ENSTTRP00000002737/1-1033 DRKERRPSAA DRDAEYRESA AERDGQAAGG RPRGDRDRDK PRDSR---KD bmy_17386T0/1-1389 DRQERRASAP DRDAEDRERA AERDGQAAGE RPGGDRVRDE PRDSR---KD 101 150 ENSP00000384290/1-1066 REKEKLKEKH REAEKSHSRG KDREKEKDRR ARKEELRQTV AHHNLLGQET ENSBTAP00000033255/1-1062 --------RE LDAERPHGRG KERERDQEHR ARREELRQTA AHHNLLARDR BACU000757/1-887 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002737/1-1033 RGRPQEKHQE RDAEKPHGRA KERKRG---R ARPAELRQVA AHRSRLG--- bmy_17386T0/1-1389 RARPKEQHRQ RDAEKPHGRG KERERD---R ARPEELRQVA AHPGPLGRDR 151 200 ENSP00000384290/1-1066 RDR------- -QLLERAERK GRSVSKVR-- -SEEKDEDSE RGDEDRERRY ENSBTAP00000033255/1-1062 DRDRDRDRDR NRDQDRPERR -RAGSKARIE EREQRDEDSE RGDEDRERRY BACU000757/1-887 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002737/1-1033 ---------- --ARD----- ----SKARIA EGERRDEDSE RGDEERERRY bmy_17386T0/1-1389 R--------- -RDRDRPERR -RAVSKARIA EGERRDEDSE RGDEKRERRY 201 250 ENSP00000384290/1-1066 RERKLQYGDS KDNPLKYWLY KEEGERRHRK PREPDRDNKH REKSSTREKR ENSBTAP00000033255/1-1062 RERKLQYGDS KDNPLKYWLY KEEGERRHRK QKEPDREKFY RFKQCKDLVR BACU000757/1-887 --SKLQYGDS KDNPLKYWLY KEEGERRHRK QKEPDREKKH REKSSTREKR ENSTTRP00000002737/1-1033 RERKLQYGDS KDNPLKYWLY KEEGERRHRK QKEPDREKKH REKSSTREKR bmy_17386T0/1-1389 RERKLQYGDS KDNPLKYWLC KEEGERRHRK QKEPDREKKH REKSSTREKR 251 300 ENSP00000384290/1-1066 --EKYSKEKS NSFSDK-GEE RHKEKRHKEG F--HFDDERH QSNVDRKEKS ENSBTAP00000033255/1-1062 FSENYVDLVS ISFFYL-GNI TETMDNHLLV YLIHLPYVKH MRLLDFEPVT BACU000757/1-887 --EKYSKEKS SSFSDKEGEE RHKEKRHKEG F--RVDEAKQ QGSVDEKEEH ENSTTRP00000002737/1-1033 --EKYSKEKS NSFSDKEGEE RHKEKRHKEG F--HVDEEKR RSSVGKKE-H bmy_17386T0/1-1389 --EKYSKEKS SSFSDKEGEE RHKEKRHKEG F--RVDEEKH RGSVHEKEEH 301 350 ENSP00000384290/1-1066 AKDEPRKRES QNGEHRNRGA SSKRDGTS-- ---------- ---------- ENSBTAP00000033255/1-1062 PFSEPSNGEF VDGEHRHRGT SLRRDGTG-- ---------- ---------- BACU000757/1-887 RRREAEVTL- ---------- ---------- ---------- ---------- ENSTTRP00000002737/1-1033 RRREAE---- -NGECRNRGA SSKRDGTG-- ---------- ---------- bmy_17386T0/1-1389 RRREAEVPFP DHPAPLGKGA SGRSQVMGLL PKGGDLGENL IQVTLLRMVN 351 400 ENSP00000384290/1-1066 ---------- ---------- ---------- ---------- -SQHAENLVR ENSBTAP00000033255/1-1062 ---------- ---------- ---------- ---------- -SRHSENLVR BACU000757/1-887 ---------- ---------- ---------- ---------- -LRHAENLER ENSTTRP00000002737/1-1033 ---------- ---------- ---------- ---------- -SEHAENLER bmy_17386T0/1-1389 AETEAQVRRE MVLEASKDTR PLHGSHTELQ NEFCLWGLTG ASKHAENLER 401 450 ENSP00000384290/1-1066 NHGKDKDSRR KHGHEEGSSV WWKLDQRPGG EETVEIEKEE TDLENARADA ENSBTAP00000033255/1-1062 TNGKDRDSRR KHGREEGPSM -WKLEQRQGN EEAMEIEKED LDLENAGTDE BACU000757/1-887 NNGKDKDSRR KHGREEGPSA -WKLARRQGS EEALEIEKED IDLENAGADE ENSTTRP00000002737/1-1033 NNGKDKDSRR KHGREEGPSA -WKLAWRQGS EEALEIEKED IGLENAGADE bmy_17386T0/1-1389 NNGKDKDSRR KHSREEGPLA -WKLARRQGS EEALEIEKED IDLENAGADE 451 500 ENSP00000384290/1-1066 YTASCEDDFE DYEDDFEVCD GDDDESSNEP ESREKLEELP LAQKKEIQEI ENSBTAP00000033255/1-1062 YTAIFEDDFE DYEDDFEVFD GADDCGADEP KEGEAAEELP PARRREIQEI BACU000757/1-887 YAASFEDDFE DYEDDFEVCD GDDDDLAREP ESGETAEELP LARRREIQEI ENSTTRP00000002737/1-1033 YAASFEDDFE GYEDDFEVCD GDDDDVAHEP ESEETAEELP LARRREIQEI bmy_17386T0/1-1389 YTASFEDDFE DYEDDFETCD GDDDDLAREP ESGETAEELP LARRREIQEI 501 550 ENSP00000384290/1-1066 QRAINAENER IGELSLKLFQ KRGRTEFEKE PRTDTNSSP- -SRASVCGIF ENSBTAP00000033255/1-1062 QKAILAENQR VGELSSKLLE KHSCPERAGG PGPGADANSS LSKTPLCGIF BACU000757/1-887 QKAIHAENER VGELSSKLFE KQGRTERGRG PGPAADVSP- -SETPACGIF ENSTTRP00000002737/1-1033 QKAIHAENER VGELSSKLFE KQGRTERGRV PGPAADVSP- -SETPACGIF bmy_17386T0/1-1389 QKAIHAENER VGELSSKLFE KQGCTECGRG PGPAADISP- -SETPACGIF 551 600 ENSP00000384290/1-1066 VDFASASHRQ KSRTQALKQK MRSTKLLRLI DLDFSFTFSL LDLPPVNEYD ENSBTAP00000033255/1-1062 VDFATASHRQ KNRTQALKQK MRSAKLLRLI DMDFSFTFSL LDLPPVNEYD BACU000757/1-887 LDFATASRRQ KSRTQALKQK TRSTKLLRLI DLDFSFTFSL LDLPPVNEYD ENSTTRP00000002737/1-1033 LDFATASRRQ KSRTQALKQK TRSTKLLRLI DLDFSFTFSL LDLPPVNEYD bmy_17386T0/1-1389 LDFATASRRQ KSRTQALKQK TRSTKLLRLI DLDFSFTFSL LDLPPVNEYD 601 650 ENSP00000384290/1-1066 MYIRNFGKKN TKQA--YVQC NEDNVERDIQ TEEIETREVW TQHPGESTVV ENSBTAP00000033255/1-1062 MYIRNFGKKN TKQA--YIQC NEDSVDRDIQ TEEVETREVW TQHPGEGTAV BACU000757/1-887 MYIRNFGKKN TKQGSWFART PFDVCNRD-- ---RESRTGW FHVRCFS--- ENSTTRP00000002737/1-1033 MYIRNFGKRN TKQA--YVQY NEDNVDRNVQ TEEVETQEVW TQHPGEGAAV bmy_17386T0/1-1389 MYIRNFGXKN TKQA--YVQY NEDNVDRDVQ TEEVETQEVW TQHPGEGAAV 651 700 ENSP00000384290/1-1066 SGGSEQRDTS D-AVVMPKID TPRLCSFLRA ACQVMAVLLE EDRLAAEPSW ENSBTAP00000033255/1-1062 SGGSERSGPG D-TAIVPKVD TPRLSGFLRA ACQVMAVLLE EDRAAAEPGW BACU000757/1-887 --GSERSSPL DAAAVVPKVN TPRLCSFLRA ACQVIAVLLE EDRVALEPIW ENSTTRP00000002737/1-1033 SGGSERSGPP DAAAVVPKVN TPRLCSFLRA ACQVIAVLLE EDRVASEPTW bmy_17386T0/1-1389 SGGSERSGPL DAAAVVPKVN TPRLCSFLRA ACQVIAVLLE EDRVALEPIW 701 750 ENSP00000384290/1-1066 NLRAQDRALY FSDSSSQLNT SLPFLQNRKV SSLHTSRVQR QMVVSVHDLP ENSBTAP00000033255/1-1062 ASQAQDCTLP FSDSCARLGT SLPFLQDRRV SCLHACRAQR RTVVSVHGLP BACU000757/1-887 TPRAQDCTLH FSDSSAQLNT SLPFLQNRRV SYLHASQVQR QMVVSVHGRP ENSTTRP00000002737/1-1033 TPRAQDCLLR FSDSSAQLNT SLPFLQNRRV SYLHAS-LQR QMVVSVHGRP bmy_17386T0/1-1389 TPRAQDCTLR FSDSSAQLNT SLPFLQNRRV SYLHASQVQR RMVVSVHGRP 751 800 ENSP00000384290/1-1066 EKSFVPLLDS KYVLCVWDIW QPSGPQKVLI CESQVTCCCL SPLKAFLLFA ENSBTAP00000033255/1-1062 GKASAPLLEH RYVLCVWDVR QPSEPQKVLV CESKVTCCCF SPVKACLLFA BACU000757/1-887 GKAFAPLLDG RYVLCVWDIW QPSGPQKVLI CESKVTCCCF SPFKAFLLFA ENSTTRP00000002737/1-1033 GKAFTPXXXX XXXXXXXXXX XXXXXXXXXX XXXXVTCCCF SPFKAFLLFA bmy_17386T0/1-1389 GKAFAPLLDG RYVLCVWDIW QPSGPQKVLI CESKVTCCCF SPFKAFLLFA 801 850 ENSP00000384290/1-1066 GTAHGSVVVW DLREDSRLHY SVTLSDGFWT FRTATFSTDG ILTSVNHRSP ENSBTAP00000033255/1-1062 GTVHGSVVVW DLREDPRIHL RVTLSGCSWT FRTPTFSTDG VLTSVNHCSP BACU000757/1-887 GTVHGSVVVW DLREDARIHH YVKLSGCFWT FRTATFST-- ---------- ENSTTRP00000002737/1-1033 GTVHGSVVVW DLREDARIHR YVKLSGCFWT FRTATFSTDG VLTSVNHRSP bmy_17386T0/1-1389 GTVHGSVVVW DLREDARIHR YVKLSGCFWT FRTATFSTDG VLTSVNHRSP 851 900 ENSP00000384290/1-1066 LQAVEPISTS VHKKQSFVLS PFSTQEEMSG LSFHIASLDE SGVLNVWVVV ENSBTAP00000033255/1-1062 LQAIEPVTGS VCKRQSCVLS PFSTQEETAG LSFHIASLDE SGLLNVWVVV BACU000757/1-887 ---------- ---------- ------EPAG LSFHVASLDE SGVLNVW--Q ENSTTRP00000002737/1-1033 LQAIEPIAGS VCKRQSCVLS PFSTQEEPAG LSFHVASLDE SGVLNVWVVV bmy_17386T0/1-1389 LQAIEPIAGS VCKRQSCVLS PFSTQEEPAG LSFHVASLDE SGVLNVWVVV 901 950 ENSP00000384290/1-1066 ELPKADIAGS ISDLGLMPGG RVKLVHSALI QLGDSL---- ---------- ENSBTAP00000033255/1-1062 ELQKADVAGS ISDLGLIPGG RIKLVHSAAI QLSDSL---- ---------- BACU000757/1-887 GLPES----- ----GLVARL LIPVARHTRE ALGGAT---- ---------- ENSTTRP00000002737/1-1033 ELAKADTAGA VSDLGLLPGG RIKLVHSAAI QLSDSL---- ---------- bmy_17386T0/1-1389 ELAKADPAGA ISDLGLLPGG RIKLVHSAAI QLSDSLLLMN QSNKCNCQMS 951 1000 ENSP00000384290/1-1066 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033255/1-1062 ---------- ---------- ---------- ---------- ---------- BACU000757/1-887 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002737/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_17386T0/1-1389 FLLFSPQSGP SYQPVIYPGK RFDISLTFPP QTEHLWESVA IADVGFSLLK 1001 1050 ENSP00000384290/1-1066 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033255/1-1062 ---------- ---------- ---------- ---------- ---------- BACU000757/1-887 ---------- ---------- ---------- ---------- -----RRVGS ENSTTRP00000002737/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_17386T0/1-1389 TWQCLPRSGG NKHPSGPCPT RAKWSGPKCR QVASSRCSRG VGVWRREAGR 1051 1100 ENSP00000384290/1-1066 ------SHKG NEFWGTTQTL NVKFLPSDPN HFIIGTDMGL ISHGTRQDLR ENSBTAP00000033255/1-1062 ------SHKD YESWGSVQTL NVKFLPSDPN HFVVGTDVGL VSHGSRRDVR BACU000757/1-887 EEGRRLSHKG YEFWGSTQTL NVKFLPSDPN RFVVGTDMGL ISQGTRQDVR ENSTTRP00000002737/1-1033 ------SHKG HEFWGSTQTL SVKFLPSDSN RFVVGTDTGL ISHGTRQDMR bmy_17386T0/1-1389 GGGEGAELRG YEFRGSAQTL NVKFLPSDPN RFVVGTDMGL ISHGTRQDVR 1101 1150 ENSP00000384290/1-1066 VAPKLFKPQQ HGIRPVKVNV IDFSPFGEPI FLAGCSDGSI RLHQLSSAFP ENSBTAP00000033255/1-1062 VSPRLFRPQQ QGPRPVKVTV IDFSPFEEPV FLAGCSDGSI RLHRLTAECP BACU000757/1-887 VSPRLFRPQQ QGVRPVKVNV IDFSPFGEPI FLAGCSDGSI RLHQLTAEQP ENSTTRP00000002737/1-1033 VSPRLFRPQQ QGMRPVKVNV IDFSPFGEPI FLAGCSDGSI RLHQLTAEHA bmy_17386T0/1-1389 VSPRLFRPQQ QGVRPVKVNV IDFSPFGEPI FLAGCSDGSI RLHQXTAEQP 1151 1200 ENSP00000384290/1-1066 LLQWDSSTDS HAVTGLQWSP TRPAVFLVQD DTSNIYIWDL LQSDLGPVAK ENSBTAP00000033255/1-1062 LLQWDHSTCG RAVTGLQWSL TRPAVFLVQD DTSCVYVWDL LESDLGPVAR BACU000757/1-887 LLQWDKSTDG RAVTGLQWSS TRPAVFLVQD DTSCVYIWDL LESDLGPVAK ENSTTRP00000002737/1-1033 LLQWDESTHG RAVIGLQWSS TRPAVFLVQD DTSCVYIWDL LESDLGPVAK bmy_17386T0/1-1389 LLQWDKSTHG RAVIGLQWSS TRPAVFLVQD DTSCVYIWDL LESDLGPVAK 1201 1250 ENSP00000384290/1-1066 QQVSPNRLVA MAAVGEPEKA GGSFLALVLA RASGSIDIQH LKRRWAAPEV ENSBTAP00000033255/1-1062 QPICPDRLVA MTIVGEAEKT RGSFLALVLA RASGSIDVQY LRREWATPAS BACU000757/1-887 QPVYPDRLVA MTVVGEAEKT RSGFLALVLA RASGDVDVQY LRREWVAPVG ENSTTRP00000002737/1-1033 QPVYPDRLVA MTVVGEAEKT RSGFLALVLA RASGDVDVQY LRREWVAPLG bmy_17386T0/1-1389 QPIYPDRLVA MTVVGEAEKT RSGFLALVLA RASGDVDVQY LRREWVAPVG 1251 1300 ENSP00000384290/1-1066 DECNRLRLLL QEAL------ ---------- ---------- ---------- ENSBTAP00000033255/1-1062 DELQRLRLLL REAL------ ---------- ---------- ---------- BACU000757/1-887 DELQRLRLLL REALEPTE-- ---------- ---------- ---------- ENSTTRP00000002737/1-1033 DELQRLRLLL REALVVG--- ---------- ---------- ---------- bmy_17386T0/1-1389 DELQRLRLLL REALVTDTVT GERSVGGQVG SLWATCGCCF TRDGTASPRN 1301 1350 ENSP00000384290/1-1066 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033255/1-1062 ---------- ---------- ---------- ---------- ---------- BACU000757/1-887 ---------- ---------- ---------- ---------- SEMGGSEQCK ENSTTRP00000002737/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_17386T0/1-1389 WEQAENSQAP RAWGTLSRPA PGAVHRDAAP CLHLRTAALP RSRQGPGPGG 1351 1400 ENSP00000384290/1-1066 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033255/1-1062 ---------- ---------- ---------- ---------- ---------- BACU000757/1-887 AEAREGDPRA GDAAQPHIRL PAPPPPRDWD LVARTTTWDP PRSPGVHSTA ENSTTRP00000002737/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_17386T0/1-1389 RDLRAGRRRA LTAHRGVHVG PLRSPPAPLE PGAWHASCPA PRGEEGSGGV 1401 1450 ENSP00000384290/1-1066 -----WPEGK LHK-- ENSBTAP00000033255/1-1062 ---------- ----- BACU000757/1-887 RVSSSLPQGQ LHWAV ENSTTRP00000002737/1-1033 ---------- ----- bmy_17386T0/1-1389 GGPGSHLDGV QWVPP