KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:43:08 2014 Check: 00 .. Name: ENSBTAP00000033320/1-590 Len: 590 Check: 9741 Weight: 1.00 Name: BACU000222/1-473 Len: 590 Check: 1576 Weight: 1.00 Name: bmy_01548T0/1-513 Len: 590 Check: 2515 Weight: 1.00 Name: ENSTTRP00000004596/1-540 Len: 590 Check: 6941 Weight: 1.00 // 1 50 ENSBTAP00000033320/1-590 MKTSRTWAWR VPAELFLLCA ALGSFSVPSS RGERPPSLGS NAVNESLAKT BACU000222/1-473 ---------- ---------- ---------- ---------- ---------- bmy_01548T0/1-513 MKTSKVWAWR APAELFLLCA ALACLSLPGS RGERPPSLES NAVNESLAKT ENSTTRP00000004596/1-540 MKTSRAWAWR APAELFFLCA ALACLSLPGS RGERPPSLES NAVNESLART 51 100 ENSBTAP00000033320/1-590 RQTRSVDVTP LPIDCELSSW SSWTTCDPCQ KKRYRHAYLI RPSQFHGEQC BACU000222/1-473 ---------- ---------- ---------- --QYRHAYLL QPSQFHGEPC bmy_01548T0/1-513 RQTRSVDVTS MPIDCELSSW SSWTICDPCQ KKRYRHAYLL QPSQFHGEPC ENSTTRP00000004596/1-540 RQTRSVDVTS MLIDCELSSW SSWTTCDPCQ KKRYRHAYLL QPSQFHGEPC 101 150 ENSBTAP00000033320/1-590 NFSDKEVEDC VSNRPCRSQV RCEGFVCAQT GRCINRRLLC NGDNDCGDQS BACU000222/1-473 SFSDKEVEDC VSNRPCRSQV RCEGFVCAQT GRCVNRRLLC NGDNDCGDQS bmy_01548T0/1-513 SFSDKEVEDC VSNRPCRSQV RCEGFVCAQT GRCVNRRLLC NGDNDCGDQS ENSTTRP00000004596/1-540 TFSDKEVEDC VSNRPCRSQV RCEGFVCAQT GRCVNRRLLC NGDNDCGDQS 151 200 ENSBTAP00000033320/1-590 DEANCRKTYK KCQQEMEQYW AIGSLASGIN LFTNNLEGPV LDHRYYAGLC BACU000222/1-473 DEGNCRRIYQ KCQQGMDQYW AIGSLASGIN LFTNNLEGPV LDHRYYAGVC bmy_01548T0/1-513 DEGNCRRIYK KCQQEMDQYW AIGSLASGIN LFTNNLEGPV LDHRYYAGAC ENSTTRP00000004596/1-540 DEGNCRRIYK KCQQEMDQYW AIGSLASGIN LFTNNLEGPV LDHRYYAGAC 201 250 ENSBTAP00000033320/1-590 SPHYILNTRF RKPYNVENFI PQTRGKYDFT LTEYESYSDF EHNVTGTAIS BACU000222/1-473 SPHYILNTRF RKPYNVESFT PQTQGKYEFA LTEYESYSDF EHSVTRTTIS bmy_01548T0/1-513 SPHYILNTRF RKPYNVENFT PQ-------- ---------- ---------- ENSTTRP00000004596/1-540 SPHYILNTRF RKPYNVENFI PQXXXXXXXX XXXXXXXXXX XXXXXXXXXX 251 300 ENSBTAP00000033320/1-590 RSSFSLGFKI AGIFELGYSS MSNIGQHFIS RIRRFSHTKS KFLHARSDLE BACU000222/1-473 KSSFSFGFKI PGIFELGISS TSSNGKHFIS RTKRFSHTKS AFLHARSDLE bmy_01548T0/1-513 ---------- ---------- ---------- --------KS AFLHARSDLE ENSTTRP00000004596/1-540 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXKS AFLHARSDLE 301 350 ENSBTAP00000033320/1-590 VAHYKLKTRN LMLHHEFLQR VKQLPLEYSY GEYRDLFRDF GTHYITEAVL BACU000222/1-473 VARYKLKPRN LMLHYEFLQR VKRLPLEYSY GEYRDLFRDF GTHYITEAVL bmy_01548T0/1-513 VARYKLKPRN LMLHYEFLQR VKRLPLEYSY GEYRDLFRDF GTHYITEAVL ENSTTRP00000004596/1-540 VARYKLKPRN LMLHYEFLQR VKRLPLEYSY GEYRDLFRDF GTHYITEAVL 351 400 ENSBTAP00000033320/1-590 GGIYEYTLIM NKEAMDRGDY SLKNIHDCAK HDFKIGAAIT SVYLKLGVSE BACU000222/1-473 GGIYEYTLIM NKEAMERADY SLKDVQACAK NDFKVGVAIE GVYVKLGVSV bmy_01548T0/1-513 GGIYEYTLIM NKEAMERADY SLKDVQACAK NDFKIGVAIE EVYVKLGVSV ENSTTRP00000004596/1-540 GGIYEYTLIM NKEAMERADY SLKDVQACAK HDFKLGAAIE EVYVKLGVSV 401 450 ENSBTAP00000033320/1-590 AKCSDILNEI KDRNKKDSMV KDLVVLVRGG ASEYVTALAY KELPTADLMQ BACU000222/1-473 GKCKGILNEI KDRNKRNTMV DDLVVLVRGG ASEYITALAY KELPTAELMQ bmy_01548T0/1-513 GKCKGILNEI KDRNKRNTMV NDLVVLVRGG ASEYITALAY KELPTAELMQ ENSTTRP00000004596/1-540 AKCKGILSEI TERNKRNTMV DDLVVLVRGG ASEYITALAY SELPTAELMQ 451 500 ENSBTAP00000033320/1-590 EWGDAVQYNP DIIKVKVMPL YELVTATDFA YSSTVKQNMK KALEEFQKEV BACU000222/1-473 EWGEAVQYNP DIVKIKAEPL YELVTATDFA YSSTVRQNMK RALEEFQKEV bmy_01548T0/1-513 EWGEA----- ------AEPL YELVTATDFA YSSTVRQNMK RALEEFEKEV ENSTTRP00000004596/1-540 EWGEAVQYNP AIVKIKAEPL YELVTATDFA YSSTVRQNMK RALEEFQKEV 501 550 ENSBTAP00000033320/1-590 DSCQCAPCQG NGVPVLKGTR CECICPAGFQ GSACEVTHRK NVPIDGKWNC BACU000222/1-473 SSCQCAPCQG NGVPVLKGSR CDCICPAGFQ GPACEITNRK ---IDPKY-- bmy_01548T0/1-513 SSCQCAPCQG NGVPVLKGSR CDCICPAGFQ GPACEITNRK NVPIDGKWNC ENSTTRP00000004596/1-540 SSCQCAPCQG NGVPVLKGTR CDCICPAGFQ GPACEITNRK ---------- 551 600 ENSBTAP00000033320/1-590 WSNWSPCSGG HKTRQRQCTN PPPGNGGNPC SGPASETLNC BACU000222/1-473 ---------- ---------- ---------- YEPLMLNTQL bmy_01548T0/1-513 WSNWSPCSGG HKTRQRQCNN PPPQNRGSPC LGPASETLNC ENSTTRP00000004596/1-540 ---------- ---------- ---------- ----------