KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:09 2014 Check: 00 .. Name: BACU000212/1-302 Len: 841 Check: 8598 Weight: 1.00 Name: bmy_00817T0/1-683 Len: 841 Check: 2713 Weight: 1.00 Name: ENSTTRP00000010640/1-532 Len: 841 Check: 6657 Weight: 1.00 Name: ENSP00000360231/1-554 Len: 841 Check: 6419 Weight: 1.00 Name: ENSBTAP00000033344/1-462 Len: 841 Check: 5546 Weight: 1.00 // 1 50 BACU000212/1-302 ---------- ---------- ---------- ---------- ---------- bmy_00817T0/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010640/1-532 MKLADSVMAG K-------AS DGSIKWQLCY DISARTWWM- ---------- ENSP00000360231/1-554 MQMCRPASSS VLYVPTRWPG GCGATWQSCP SPPPRRTRIP QRPAVMYSPL ENSBTAP00000033344/1-462 ---------- ---------- ---------- ---------- ---------- 51 100 BACU000212/1-302 ---------- ---------- ---------- ---------- --MSKEEERA bmy_00817T0/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010640/1-532 ----DEFHPF IEALLPHVRA FAYTWFNLQA RKRKYFKKHE KRMSKEEERA ENSP00000360231/1-554 CLTQDEFHPF IEALLPHVRA FAYTWFNLQA RKRKYFKKHE KRMSKEEERA ENSBTAP00000033344/1-462 ---------- ---------- ---------- ---------- --MSKEEERA 101 150 BACU000212/1-302 VKDELLSEKP EVKQKWASRL LAKLRKDIRP EYREDFVLTV TGKKPPCCVL bmy_00817T0/1-683 ---------- ---------- -----MLLKS EYHLN----- TPRKP---IL ENSTTRP00000010640/1-532 VKDELLSEKP EVKQKWASRL LAKLRKDIRP EYREDFVLTV TGKKPPCCVL ENSP00000360231/1-554 VKDELLSEKP EVKQKWASRL LAKLRKDIRP EYREDFVLTV TGKKPPCCVL ENSBTAP00000033344/1-462 VKDELLSEKP EVKQKWASRL LAKLRKDIRP EYREDFVLTV TGKKPPCCVL 151 200 BACU000212/1-302 SNPDQ---KG K-MRRIDCLR QADKVWRLDL VMVILFKGIP LESTDGERLV bmy_00817T0/1-683 KYPDTLEVKG LYFKNKQPFH EHVEF----I VKAIHYK--- -EHQKSKLLI ENSTTRP00000010640/1-532 SNPDQ---KG K-MRRIDCLR QADKVWRLDL VMVILFKGIP LESTDGERLV ENSP00000360231/1-554 SNPDQ---KG K-MRRIDCLR QADKVWRLDL VMVILFKGIP LESTDGERLV ENSBTAP00000033344/1-462 SNPDQ---KG K-MRRIDCLR QADKVWRLDL VMVILFKGIP LESTDGERLV 201 250 BACU000212/1-302 KSPQCSNPGL CVQPHHIG-- VSVKELDLYL AYFVHAADKR LIVLRESSGL bmy_00817T0/1-683 FLDQKAKPMN PVRSHEGGHE AEIKTFSTLL FHFIQVNLKV PASQVTLTLR ENSTTRP00000010640/1-532 KSPQCSNPGL CVQPHHIG-- VSVKELDLYL AYFVHAADSS QSESPSQPSD ENSP00000360231/1-554 KSPQCSNPGL CVQPHHIG-- VSVKELDLYL AYFVHAADSS QSESPSQPSD ENSBTAP00000033344/1-462 KSPQCSNPGL CVQPHHIG-- VSVKELDLYL AYFVHAADSS QSESPSQPSD 251 300 BACU000212/1-302 VKLVDFLYV- HIGLARLPSW QLLEPDGRKK VV-------- -------ESY bmy_00817T0/1-683 TSQKMYSFSS AYG-SKAAAW EVNAPFHGQR IL-----PFG TGLHPHAYRK ENSTTRP00000010640/1-532 ADIKDQPENG HLGFQD--SF VTSGVFSVTE LVRVSQTPIA AGTGPN-FSL ENSP00000360231/1-554 ADIKDQPENG HLGFQD--SF VTSGVFSVTE LVRVSQTPIA AGTGPN-FSL ENSBTAP00000033344/1-462 ADIKDQPENG HLGFQD--SF VTSGVFSVTE LVRVSQTPIA AGTGPN-FSL 301 350 BACU000212/1-302 HDLKG----D VGKMAGRQLL RKVSILIAYE RF------IA STVDQTTF-- bmy_00817T0/1-683 HGLGSA---D MNPDMEDGTY QYLEKSSSTK RLKSVEDEMD SPGEEPFYTG ENSTTRP00000010640/1-532 SDLESSSYYS MSPGAMRRSL PSTSSTSSTK RLKSVEDEMD SPGEEPFYTG ENSP00000360231/1-554 SDLESSSYYS MSPGAMRRSL PSTSSTSSTK RLKSVEDEMD SPGEEPFYTG ENSBTAP00000033344/1-462 SDLESSSYYS MSPGAMRRSL PSTSSTSSTK RLKSVEDEMD SPGEEPFYTG 351 400 BACU000212/1-302 ---------- ---------- ---------- ---------- RFGFPAPPRI bmy_00817T0/1-683 QGRSPGSGSQ SSGWHEVEPD TITLAKMLEV LNSSVKSFKV KFGMPSPTTL ENSTTRP00000010640/1-532 QGRSPGSGSQ SSGWHEVEP- ---------- ---------- --GMPSPTTL ENSP00000360231/1-554 QGRSPGSGSQ SSGWHEVEP- ---------- ---------- --GMPSPTTL ENSBTAP00000033344/1-462 QGRSPGSGSQ SSGWHEVEP- ---------- ---------- --GMPSPTTL 401 450 BACU000212/1-302 PR-------- -SPERWPRIV KVLSLTERVA VSAKPGA--- ---------- bmy_00817T0/1-683 KKSEKSGFSS PSPSQTSSLG TAFTQHHRPV ITG-PRALVV LAPKLGSGSV ENSTTRP00000010640/1-532 KKSEKSGFSS PSPSQTSSLG TAFTQHHRPV ITG-PRA--- ---------- ENSP00000360231/1-554 KKSEKSGFSS PSPSQTSSLG TAFTQHHRPV ITG-PRA--- ---------- ENSBTAP00000033344/1-462 KKSEKSGFSS PSPSQTSSLG TAFTQHHRPV ITG-PRA--- ---------- 451 500 BACU000212/1-302 ---------- ---------- ---------- ---------- ---------- bmy_00817T0/1-683 CFQSPPGAAG EGPVRCQGKV TVKYDLEELR KRLNLEEWIL EQLPGLYNYQ ENSTTRP00000010640/1-532 ---------- ---------- ---------- ---------- ---------- ENSP00000360231/1-554 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033344/1-462 ---------- ---------- ---------- ---------- ---------- 501 550 BACU000212/1-302 ---------- ---------S PGNLTAVLLM TTLPV----- PYCSLNYAVL bmy_00817T0/1-683 EGEILELEIA VDELLDVETS PHATPSTLHF PTSPIIQQPG PY--FSHPAI ENSTTRP00000010640/1-532 ---------- ---------S PHATPSTLHF PTSPIIQQPG PY--FSHPAI ENSP00000360231/1-554 ---------- ---------S PHATPSTLHF PTSPIIQQPG PY--FSHPAI ENSBTAP00000033344/1-462 ---------- ---------S PHATPSTLHF PTSPIIQQPG PY--FSHPAI 551 600 BACU000212/1-302 NAH----FKL FTLLLV---- ---------- ---------- -------LL- bmy_00817T0/1-683 RYHPQETLKE FVQLVCPDAG QQAGQ----- PNGSSQGKVH NPFLPTPMLP ENSTTRP00000010640/1-532 RYHPQETLKE FVQLVCPDAG QQAGQVGFLN XXXXXXXXXX XXXXXXXXXX ENSP00000360231/1-554 RYHPQETLKE FVQLVCPDAG QQAGQVGFLN PNGSSQGKVH NPFLPTPMLP ENSBTAP00000033344/1-462 RYHPQETLKE FVQLVCPDAG QQAGQVGFLN PNGSSQGKVH NPFLPTPMLP 601 650 BACU000212/1-302 ---------- ---------- ---------- ---------- ---------- bmy_00817T0/1-683 PPPPPPMARP VPLPVPDTKP PTTSAEGGAA SPTSPTYSTP STSPANRFVS ENSTTRP00000010640/1-532 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXYSTP STSPANRFVS ENSP00000360231/1-554 PPPPPPMARP VPLPVPDTKP PTTSTEGGAA SPTSPTYSTP STSPANRFVS ENSBTAP00000033344/1-462 PPPPPPMARP VPLPVPDTKP PTTSTEGGAA SPTSPTYSTP STSPANRFVS 651 700 BACU000212/1-302 ---------- ---------- ---------- ---------- ---------- bmy_00817T0/1-683 VGPRDPSFVN IPQQTQEKNP FTGPFLLQTC RALDPISLGF LLREKKGIFA ENSTTRP00000010640/1-532 VGPRDPSFVN IPQQT----- ---------- ---------- ---------- ENSP00000360231/1-554 VGPRDPSFVN IPQQT----- ---------- ---------- ---------- ENSBTAP00000033344/1-462 VGPRDPSFVN IPQQT----- ---------- ---------- ---------- 701 750 BACU000212/1-302 ---------- ---------- ---------- ---------- ---------- bmy_00817T0/1-683 YEITIFKVIT KRGQAWVFDF RNQSLARLLS QNDHLNFKKS TLKTLRTFPN ENSTTRP00000010640/1-532 ---------- ---QSWYLG- ---------- ---------- ---------- ENSP00000360231/1-554 ---------- ---QSWYLG- ---------- ---------- ---------- ENSBTAP00000033344/1-462 ---------- ---QSWYLG- ---------- ---------- ---------- 751 800 BACU000212/1-302 ---------- ---------- ---------- ---------- ---------- bmy_00817T0/1-683 EGHFPSPSTE ALLILKRFLN GLCSARLSSE KERGLLTSSI LSGISAVSSH ENSTTRP00000010640/1-532 ---------- ---------- ---------- ---------- ---------- ENSP00000360231/1-554 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033344/1-462 ---------- ---------- ---------- ---------- ---------- 801 850 BACU000212/1-302 ---------- ---------- ---------- ---------- - bmy_00817T0/1-683 SELDLRKTLD WQGEMRRYFW IILFANWIHE KDSGKGYCFF R ENSTTRP00000010640/1-532 ---------- ---------- ---------- ---------- - ENSP00000360231/1-554 ---------- ---------- ---------- ---------- - ENSBTAP00000033344/1-462 ---------- ---------- ---------- ---------- -