KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:43:09 2014 Check: 00 ..
Name: ENSTTRP00000007382/1-717 Len: 740 Check: 6989 Weight: 1.00
Name: ENSP00000352358/1-725 Len: 740 Check: 7076 Weight: 1.00
Name: ENSBTAP00000033351/1-723 Len: 740 Check: 5746 Weight: 1.00
Name: bmy_20635T0/1-713 Len: 740 Check: 4242 Weight: 1.00
Name: BACU019362/1-720 Len: 740 Check: 9528 Weight: 1.00
//
1 50
ENSTTRP00000007382/1-717 MGLPLPRE-K GHILCLWRKF RRWFQRQESW AQRRDEQNLL QQKRI--WES
ENSP00000352358/1-725 MGLSLPKE-K GLILCLWSKF CRWFQRRESW AQSRDEQNLL QQKRI--WES
ENSBTAP00000033351/1-723 MGLPLPKE-K GHILCLWRKL CRWFQRQEPW AQRRDEQNLL QQRRI--WES
bmy_20635T0/1-713 MEKELHKGCR GFLSFFSWVF KDPSDFCELW LHLPFRESIL AASRRMDW--
BACU019362/1-720 MGLPLPRE-K GHILCLWRKF RRWFQRQESW ARRRDDEYLL QQKRI--WES
51 100
ENSTTRP00000007382/1-717 PLLTAAKEND IQALVKLLKY EACDVHQK-- GALGETALHV AALYDHLEAA
ENSP00000352358/1-725 PLLLAAKDND VQALNKLLKY EDCKVHQR-- GAMGETALHI AALYDNLEAA
ENSBTAP00000033351/1-723 PLLLAAKEND IQALSKLLKY EACDVHQKVP GAMGETALHV AALYDNLEAA
bmy_20635T0/1-713 ----AAKEND IQALSKLLKY EACDVHQK-- GALGETALHV AALYDNLEAA
BACU019362/1-720 PLLTAAKEND VQALSKLLKY EACDVHQK-- GALGETALHV AALYDNLEAA
101 150
ENSTTRP00000007382/1-717 IVLMEAAPEL VDEPITSELY EGQTALHMAI MNQNVNLVKA LLAHGASVSA
ENSP00000352358/1-725 MVLMEAAPEL VFEPMTSELY EGQTALHIAV VNQNMNLVRA LLARRASVSA
ENSBTAP00000033351/1-723 TVLMEAAPEL VKEPMTSELY EGQTALHIAV MNRNVNLVKA LLAHGASVSA
bmy_20635T0/1-713 IALMEAVPEL VNEPITSELY EGQTALHMAV MNQNVNLVKA LLAHGANVSA
BACU019362/1-720 IALMEAVPEL VNEPITSELY EGQTALHMAV MNQNVNLVKA LLAHGANVSA
151 200
ENSTTRP00000007382/1-717 RAVGSAFCLS PHNLLYFXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000352358/1-725 RATGTAFRRS PCNLIYFGEH PLSFAACVNS EEIVRLLIEH GADIRAQDSL
ENSBTAP00000033351/1-723 RAIGSAFRLT PHNLIYFGEH PLSFAACMGS EEIVRLLIKH GADIRAQDSL
bmy_20635T0/1-713 RVTGSNFCPG PHNLISFGEH PLSFAACMGS EEIVRLLIEH GADIRAQDSL
BACU019362/1-720 RVTGSNFCPG PHNLISFGEH PLSFAACVGS EEIVRLLIEH GADIRAQDSL
201 250
ENSTTRP00000007382/1-717 XNTVLHILVL QPSKTFACQM YNLLLSYDGH RDHLQSLDLV PNHQGLTPFK
ENSP00000352358/1-725 GNTVLHILIL QPNKTFACQM YNLLLSYDRH GDHLQPLDLV PNHQGLTPFK
ENSBTAP00000033351/1-723 GNTVLHILVL QPNKTFACQM YNLLLSYDRR GDHLQSLDLM LNHQGLTPFK
bmy_20635T0/1-713 GNTVLHILVL QPNKTFACQM YNLLLSYDAR GDHLQSLDLV PNHQGLTPFK
BACU019362/1-720 GNTVLHILVL QPNKTFACQM YNLLLSYDGR GDHLQSLDLV PNHQGLTPFK
251 300
ENSTTRP00000007382/1-717 LAGVEGNTTM FQHLMQKRKH IQWTCGPLTS TLYDLTEIDS SGEEQSLLEL
ENSP00000352358/1-725 LAGVEGNTVM FQHLMQKRKH TQWTYGPLTS TLYDLTEIDS SGDEQSLLEL
ENSBTAP00000033351/1-723 LAGVEGNTVM FQNLVQKQKY IQWTCGPLTS TLYDLTEIDS SGEELSLLEL
bmy_20635T0/1-713 LAGVEGNTMM FQNLMQKRKY IQWTYGPLTS TLYDLTEIDS SGEEQSLLEL
BACU019362/1-720 LAGVEGNTTM FQNLMQKRKH IQWTYGPLTS TLYDLTEIDD SGEQQSLLEL
301 350
ENSTTRP00000007382/1-717 IVTSKKREXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000352358/1-725 IITTKKREAR QILDQTPVKE LVSLKWKRYG RPYFCMLGAI YLLYIICFTM
ENSBTAP00000033351/1-723 IVTSKKREAR QILDQTPVKE LVTLKWKRYG RPYFCVLAAM YLLYIVCFTM
bmy_20635T0/1-713 VVTSKKREAR QILDQTPVKE LVNLKWKRYG WPYFCMLAAI YLLYMVCFTT
BACU019362/1-720 IVTSKKREVR GTGRGQEGVW SSGEGATGES GSLSCLLSS- ----------
351 400
ENSTTRP00000007382/1-717 XXXXXXXXXX XXXXXX---X XXXXXXXXXX X-------XE AYVTPEDHLR
ENSP00000352358/1-725 CCIYRPLKPR TNNRTS---P RDNTLLQQKL L-------QE AYMTPKDDIR
ENSBTAP00000033351/1-723 CCVYRPLKPR TDNETD---P RDNTIWEQKP L-------QE AYVTHQDHLR
bmy_20635T0/1-713 CCVYRPLNPR TDKQTG---P RDNTLLQQKL L-------QE AYVTPEDHLR
BACU019362/1-720 CSAAGSPDPG PDASEGAGEP QVEEIWVAIL LCAGCHIPAE AYVTPEDHLR
401 450
ENSTTRP00000007382/1-717 LVGELVSVFG AVIILLIEIP DIFRVGVTRF FGQTILGGPF HVLFITYACM
ENSP00000352358/1-725 LVGELVTVIG AIIILLVEVP DIFRMGVTRF FGQTILGGPF HVLIITYAFM
ENSBTAP00000033351/1-723 LVGELVSIFG AVIILFIEIT DIFRVGLSRV FGQTILGGPF HVLFITYSCM
bmy_20635T0/1-713 LVGELVSVFG AVIILLIEIP DIFRVGVTRF FGQTILGGPF HVLFITYACM
BACU019362/1-720 LVGELVSVFG AVIILLIEIP DIFRVGVTRF FGQTILGGPF HVLFMTYACM
451 500
ENSTTRP00000007382/1-717 VLVTMVMRLT NTNGEVVPMS FALVLGWCNV MYFARGFQML GPFTVMIQKM
ENSP00000352358/1-725 VLVTMVMRLI SASGEVVPMS FALVLGWCNV MYFARGFQML GPFTIMIQKM
ENSBTAP00000033351/1-723 VLVTMVMRLT NTSGEVVPMS FALVLGWCSV MYFARGFQML GPFTIMIQKM
bmy_20635T0/1-713 VLVTMVMRLT NTNGEVVPMS FALVLGWCNV MYFARGFQML GPFT-----M
BACU019362/1-720 VLVTMVMRLT NTNGEVVPMS FALVLGWCNV MYFVQGFQML GPFTVMIQKM
501 550
ENSTTRP00000007382/1-717 IFGDLMRFCW LMAVVILGFA SAFFIIFQTE DPNELGHFYS YPMALFSTFE
ENSP00000352358/1-725 IFGDLMRFCW LMAVVILGFA SAFYIIFQTE DPEELGHFYD YPMALFSTFE
ENSBTAP00000033351/1-723 IFGDLMRFCW LMAVVILGFA SAFFIIFQTE DPNELGHFYS YPMALFSTFE
bmy_20635T0/1-713 IFGDLMRFCW LMAVVILGFA SAFFIIFQTQ DPNELGHFYN YPMALFSTFE
BACU019362/1-720 IFGDLMRFCW LMAVVILGFA SAFFIIFQTE DPNELGHFYN YPMALFSTLE
551 600
ENSTTRP00000007382/1-717 LFLTIIDGPA NYTVDLPFMY SVTYAAFAII AALLMLNLLI AMMGDTHWRV
ENSP00000352358/1-725 LFLTIIDGPA NYNVDLPFMY SITYAAFAII ATLLMLNLLI AMMGDTHWRV
ENSBTAP00000033351/1-723 LFLTIIDGPA NYDVDLPFMY SITYAAFAII AALLMLNLLI AMMGDTHWRV
bmy_20635T0/1-713 LFLTIIDGPA NYDVDLPFMY SITYAAFAVI AALLMLNLLI AMMGDTHWRV
BACU019362/1-720 LFLTIIDGPA NYSVDLPFMY SVTYAAFAVI AALLMLNLLI AMMGDTHWRV
601 650
ENSTTRP00000007382/1-717 AHERDELWRA QVVATTVMLE KKLPRCLWPR SGICGRKFGL GDRWFLRVED
ENSP00000352358/1-725 AHERDELWRA QIVATTVMLE RKLPRCLWPR SGICGREYGL GDRWFLRVED
ENSBTAP00000033351/1-723 AHERDELWRA QVVATTVMLE KKLPRCLWPR SGICGHKFGL GDRWFLRVEE
bmy_20635T0/1-713 AHERDELWRA QVVATTVMLE KKLPRCLWPR SGICGRKFGL GDRWFLRVED
BACU019362/1-720 AHERDELWRA QVVATTVMLE KKLPRCLWPR SGICGRKFGL GDRWFLRVED
651 700
ENSTTRP00000007382/1-717 RQDLNRQRVR RYAQAFCNAG SE----DDME GRGLGGP--- HLSLPAPSVS
ENSP00000352358/1-725 RQDLNRQRIQ RYAQAFHTRG SEDLDKDSVE KLELGCPFSP HLSLPMPSVS
ENSBTAP00000033351/1-723 KQDINQQRVR RYAQAFCHPG SE----DDTE RLWLGGPFGT HLSLLTPSVS
bmy_20635T0/1-713 RQDLNRQRVW RYAQAFCNPG SE----DDME GRWLGGPFGP HLSLPAPSVS
BACU019362/1-720 RRDLNRQRVR RYAQAFCNPG SE----DDME GRWLGGPFGP HLSLPDPSVS
701 750
ENSTTRP00000007382/1-717 RSTSRSSTNW ERLREAT-RR ERRGTMTMAL EDGQCWEYQI
ENSP00000352358/1-725 RSTSRSSANW ERLRQGTLRR DLRGIINRGL EDGESWEYQI
ENSBTAP00000033351/1-723 RSTSRSSINW ERLRQGTLKR ELRGVVNKAL EDGEGWEYQI
bmy_20635T0/1-713 RSTSRSSMNW GRLREATRRR ERRGTVNRAL EDREGWEYQI
BACU019362/1-720 RSTSRSSMNW GRLWEATRRR ERRGTVNRAL EDGEGWEYQI