KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:10 2014 Check: 00 .. Name: ENSP00000359892/1-719 Len: 723 Check: 6891 Weight: 1.00 Name: ENSBTAP00000033380/1-677 Len: 723 Check: 7581 Weight: 1.00 Name: ENSTTRP00000014296/1-719 Len: 723 Check: 4184 Weight: 1.00 Name: bmy_17313T0/1-467 Len: 723 Check: 8719 Weight: 1.00 Name: BACU009962/1-676 Len: 723 Check: 6231 Weight: 1.00 // 1 50 ENSP00000359892/1-719 MNDTEKPADT PSEEEDFGDP RTYDPDFKGP VANRSCTDVL CCMIFLLCII ENSBTAP00000033380/1-677 ---------- ---------- ---------- ---------- ----LLLIVL ENSTTRP00000014296/1-719 MSDEGELPAT YLEGKNCSDP RIHDPHF-GP VVNKSCTDVL CCMIFILFII bmy_17313T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU009962/1-676 ---------- ---------- ---------- ---------- --MIFILFII 51 100 ENSP00000359892/1-719 GYIVLGLVAW VHGDPRRAAY PTDSQGHFCG QKGTPNENKT ILFYFNLLRC ENSBTAP00000033380/1-677 SFLV--PTAW VNGDPRRVAY PTDSQGYFCG QKGTPNENKS ILFYFNLLTC ENSTTRP00000014296/1-719 AYILLGLVAW VNGDPRRVAY PTDSQGHFCG QKGTPNENKP ILFYFNLLSC bmy_17313T0/1-467 ---------- ---------- ---------- -------NKP ILFYFNLLSC BACU009962/1-676 AYILLGLVAW VNGDPRRVAY PTDSQGYFCG QKGTPNENKP ILFYFNLLSC 101 150 ENSP00000359892/1-719 TSPSVLLNLQ CPTTQICVSK CPEKFLTYVE MQLLYTKDKS YWEDYRQFCK ENSBTAP00000033380/1-677 TSPSVVVNLQ CPTTQICVSK CPERFLTYME IQFKYKNDSE YWTYYSQFCR ENSTTRP00000014296/1-719 TSPSVVVNLQ CPTRQICVSK CPEKFLTYME IQFMYRKDRN DWTYYSQFCK bmy_17313T0/1-467 TSPSVVVNLQ CPTRQICVSK CPERFLTYME IQFRYRKDRN YWTYYSQFCK BACU009962/1-676 TSPSVVVNLQ CPTRQICVSK CPERFLTYME IQFRYRKDRN YWTYYSQFCK 151 200 ENSP00000359892/1-719 TT-AKPVKSL TQLLLDDDCP TAIFPSKPFL QRCFPDFSTK NGTLTIGSKM ENSBTAP00000033380/1-677 TTFLKPAETL SQVLLDNDCP SAIYPSKPFL QRCFPDFSTK NGTLTVGNKT ENSTTRP00000014296/1-719 SAFLKPAKTL TQVLLDDDCP TAIFPSKPYL QRCFPDFSTK NGTLTVGNKT bmy_17313T0/1-467 STHLKPAKTL TQVLLDDDCP TAIFPSKPYL QRCFPDFSTK NGTLTVGNKT BACU009962/1-676 SAHLKPAKTL TQVLLDDDCP TAIFPSKPYL QRCFPDFSTK NGTLTVGNKT 201 250 ENSP00000359892/1-719 MFQDGNGGTR SVVELGIAAN GINKLLDAKS LGLKVFEDYA RTWYWILIGL ENSBTAP00000033380/1-677 VFDDGSGKTR NAAELRRAAN GINKALDARA IGVKVFEDYA MTWYWILIGL ENSTTRP00000014296/1-719 VFEDGSGKTR NAVELRAAAN GINKVLDARA IGVKVFEDYA TTWYWILIGL bmy_17313T0/1-467 VFEDGRGKTR NAVELRAAAN GINNVLDARA IGVKVFEDYA TTWYWILIGL BACU009962/1-676 VFEDGSGKTR NAVELRAAAN GINKVLDARA IGVKVFEDYA TTWYWILIGL 251 300 ENSP00000359892/1-719 TIAMVLSWIF LILLRFIAGC LFWVFMIGVI GIIGYGIWHC YQQYTNLQER ENSBTAP00000033380/1-677 TIAMFLSWMF VMLLRFTAGL LFWIFTFGVI GIIAYGIWRC YLEYSRLQEQ ENSTTRP00000014296/1-719 TIAMLLSWMF VILLRFTAGF LFWLFTFGVI GIIAYGIWHC YREYSNLQGQ bmy_17313T0/1-467 TVAMLLSWMF VILLRFTAGF LFWLFTFGVI GIIAYGIWHC YREYSSLQGQ BACU009962/1-676 TIAMLLSWMF VILLRFTAGF LFWLFTFGVI GIIAYGIWHC YREYSSLQGQ 301 350 ENSP00000359892/1-719 PSSVLTIYDI GIQTNISMYF ELQQTWFTFM IILCIIEVIV ILMLIFLRNR ENSBTAP00000033380/1-677 PSSRLNAYTI GIQTDISMYF RLKQTWFALM IILCLLELFI ILMLIFLRNR ENSTTRP00000014296/1-719 PNAHLTVFHI GIQTDISMYF QLKQTWFAFM IILCILEVFI ILMLIFLRDR bmy_17313T0/1-467 PNSHLTVYHI GIQTDISMYF QLKQTWFAFM IILCILEVFI ILMLIFLRDR BACU009962/1-676 PDSHLTVYHI GIQTDISMYF QLKQTWFAFM IILCILEVFI ILMLIFLRDR 351 400 ENSP00000359892/1-719 IRVAIILLKE GSKAIGYVPS TLVYPALTFI LLSICICYWV VTAVFLATSG ENSBTAP00000033380/1-677 IRISIALLKE GSKAIGYLPS TLIYPALTFF FLSVCISYWA VVALYLATSG ENSTTRP00000014296/1-719 IRISIALLKE GSKAIGYIPT TLIYPVLTFI LLSICISYWA VIAVYLATSG bmy_17313T0/1-467 IRISIALLKE GSKAIGYIPT TLIYPVLTFI FLSICISYWA VIAVYLATSG BACU009962/1-676 IRISIALLKE GSKAIGYIPT TLIYPVLTFI FLSICISYWA VIAVYLATSG 401 450 ENSP00000359892/1-719 VPVYKVIAPG GHCIHENQTC DPEI---FNT TEIAKACPGA LCNFAFYGGK ENSBTAP00000033380/1-677 APIYKVIAPQ GHCEHENKTC DPVVMQGFNT TEVAKACPGA QCHFAFYGGK ENSTTRP00000014296/1-719 VPIYKVIAPE GQCKHENKTC NPEI---FNT TEIAKACPGA QCRFAFYGGA bmy_17313T0/1-467 VPIYKVIAPE GQCKHENKTC NPEI---FNT TEIAKACPGA QCHFAFYGGK BACU009962/1-676 VPIYKVTAPE GQCKHENKTC NPEI---FNT TEIAKACPGA QCHFAFYGGK 451 500 ENSP00000359892/1-719 SLYHQYIPTF HVYNLFVFLW LINFVIALGQ CALAGAFATY YWAMKKPDDI ENSBTAP00000033380/1-677 SLYHQYITTF QLLNLFVFLW LINFVIALGQ CALAGAFASY YWALKKPDDI ENSTTRP00000014296/1-719 TLYHQYITTF QIFNLFVFLW LINFVIALGQ CALAGAFASY YWALKKPDDI bmy_17313T0/1-467 SLYHQYITTF QIFNLFIFLW LINFVIALSQ CALAGAFASY YWALKKPDDI BACU009962/1-676 SLYHQYITTF QIFNLFIFLW LINFVIALGQ CALAGAFASY YWALKKPDDI 501 550 ENSP00000359892/1-719 PRYPLFTAFG RAIRYHTGSL AFGSLIIALI QMFKIVLEYL DHRLKRTQNT ENSBTAP00000033380/1-677 PPYPLFTAFG RAIRYHTGSL AFGSLILAII QMFRLILEYL DKRLQEAQSN ENSTTRP00000014296/1-719 PPYPLFTAFG RAIRYHTGSL AFGSLILAVV QMFRLILEYL DKRLKQAQNN bmy_17313T0/1-467 PPYPLFTAFG RAIRYHTGSL AFGSLILAVV QMFRLILEYL DKRLK----- BACU009962/1-676 PPYPLFTAFG RAIRYHTGSL AFGSLILAVV QMFRLILEYL DKHLKEAQNN 551 600 ENSP00000359892/1-719 LSKFLQCCLR CCFWCLENAI KFLNRNAYIM IAIYGRNFCR SAKDAFNLLM ENSBTAP00000033380/1-677 ISKFLKCCLR CCFWCLEKAV KFLNRNAYVM MAIYGKNFCK SARDAFNLLM ENSTTRP00000014296/1-719 ISKFLKCCLR CCFWCLEKAV KFLNRNAYVM IAIYGKNFCR SARDAFNLLM bmy_17313T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU009962/1-676 ISKFLKCCLR CCFWCLEKAV KFLNRNAYVM IAIYGKNFCR SARDAFNLLM 601 650 ENSP00000359892/1-719 RNVLKVAVTD EVTYFVLFLG KLLVAGSIGV LAFLFFTQRL PVIAQGPASL ENSBTAP00000033380/1-677 RNILKIAVMD RVTDFVLILG KILVAGCIGV LAFLLFTERL PVIIEGPTSL ENSTTRP00000014296/1-719 RNILKVAVMD RVTDFVLILG KILVAGCIGV LAFLLFTERL PMIIVGPTSL bmy_17313T0/1-467 ---------G KIPEFIF--- ---------- ---------- ---------- BACU009962/1-676 RNILKVAVMD RVTDFVLILG KILVAGCIGV LAFLLFTERL PMITEGPTSL 651 700 ENSP00000359892/1-719 NYYWVPLLTV IFGSYLIAHG FFSVYAMCVE TIFICFCEDL ERNDGSTEKP ENSBTAP00000033380/1-677 NYYWVPLLTV IIGSYIIAHG FFSVYAMCIE TIFICFCEDL ERNDGSTEKP ENSTTRP00000014296/1-719 NYYWVPLLTV MIGSYLIAHG FFSVYAMCIE TIFICFCEDL ERNDGSTEKP bmy_17313T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU009962/1-676 NYYWVPLMTV IIGSYLIAHG FFSVYAMCIE TIFICFLEDL ERNDGSAERP 701 750 ENSP00000359892/1-719 YFVTPNLHGI LIKKQLVPQK QKE ENSBTAP00000033380/1-677 YFITPTLHGI LNKKQLVPQK QKK ENSTTRP00000014296/1-719 YFITPTLHGI LNKKQLVPQK QKE bmy_17313T0/1-467 ---------- ---------S QTS BACU009962/1-676 YYMSQSLLKI LNEQN--AQT KKQ