KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:12 2014 Check: 00 .. Name: ENSP00000380692/1-941 Len: 942 Check: 3575 Weight: 1.00 Name: ENSTTRP00000009023/1-941 Len: 942 Check: 5293 Weight: 1.00 Name: ENSBTAP00000033407/1-878 Len: 942 Check: 7638 Weight: 1.00 Name: bmy_04332T0/1-797 Len: 942 Check: 595 Weight: 1.00 Name: BACU006742/1-720 Len: 942 Check: 5475 Weight: 1.00 // 1 50 ENSP00000380692/1-941 MAGAAAAVAA GAAAGAAAAA VSVAAPGRAS APPPPPPVYC VCRQPYDVNR ENSTTRP00000009023/1-941 MAGAAAAVAA GAAAGAAAAA VSVAAPGRAS APPPPPPVYC VCRQPYDVNR ENSBTAP00000033407/1-878 ---------- ---------- ---------- ---------- ---------- bmy_04332T0/1-797 ---------- ---------- ---------- ---------- ---------- BACU006742/1-720 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000380692/1-941 FMIECDICKD WFHGSCVGVE EHHAVDIDLY HCPNCAVLHG SSLMKKRRNW ENSTTRP00000009023/1-941 FMIECDICKD WFHGSCVGVE EHHAVDIDLY HCPNCAVLHG SSLMKKRRNW ENSBTAP00000033407/1-878 ---------- ----SCVGVE EHHAVDIDLY HCPNCALLHG SSLMKKRRNW bmy_04332T0/1-797 ---------- ---------- ---------- ---------- ---MKKRRNW BACU006742/1-720 ---------- ----SCVGVE EHHAVDIDLY HCPNCAVLHG SSLMKKRRNW 101 150 ENSP00000380692/1-941 HRHDYTEIDD GSKPVQAGTR TFIKELRSRV FPSADEIIIK MHGSQLTQRY ENSTTRP00000009023/1-941 HRHDYTEIDD GSKPVQAGTR TFVKELRSRV FPSADEIIVK MHGSQLTQRY ENSBTAP00000033407/1-878 HRHDYTEIDD GSKPVQAGTR TFVKELRSRV FPSADEIIVK MHGSQLTQRY bmy_04332T0/1-797 HRHDYTEIDD GSKPVQAGTR TFVKELRSRV FPSADEIIVK MHGSQLTQRY BACU006742/1-720 HRHDYTEIDD GSKPVQAGTR TFVKELRSRV FPSADEIIVK MHGSQLTQRY 151 200 ENSP00000380692/1-941 LEKHGFDVPI MVPKLDDLGL RLPSPTFSVM DVERYVGGDK VIDVIDVARQ ENSTTRP00000009023/1-941 LEKHGFEVPI MVPKLDDLGL RLPPPTFSVM DVERYVGGDK VIDVIDVARQ ENSBTAP00000033407/1-878 LEKHGFEVPI MVPKLDDLGL RLPPPTFSVT DVERYVGGDK VIDVIDVARQ bmy_04332T0/1-797 LEKHGFEVPI MVPKLDDLGL RLPPPTFSVM DVERYVGGDK VIDVIDVARQ BACU006742/1-720 LEKHGFEVPI MVPKLDDLGL RLPPPTFSVM DVERYVGGDK VIDVIDVARQ 201 250 ENSP00000380692/1-941 ADSKMTLHNY VKYFMNPNRP KVLNVISLEF SDTKMSELVE VPDIAKKLSW ENSTTRP00000009023/1-941 ADSKMTLHNY VKYFMNPNRP KVLNVISLEF SDTKMSELVE VPDIARKLSW ENSBTAP00000033407/1-878 ADSKMTLHNY VKYFTNPNRP KVLNVISLEF SDTKMSELVE VPDIARKLSW bmy_04332T0/1-797 ADSKMTLHNY VKYFMNPNRP KVLNVISLEF SDTKMSELVE VPDIARKLSW BACU006742/1-720 ADSKMTLHNY VKYFMNPNRP KVLNVISLEF SDTKMSELVE VPDIARKLSW 251 300 ENSP00000380692/1-941 VENYWPDDSV FPKPFVQKYC LMGVQDSYTD FHIDFGGTSV WYHVLWGEKI ENSTTRP00000009023/1-941 VENYWPDDSV FPKPFVQKYC LMGVQDSYTD FHIDFGGTSV WYHVLWGEKV ENSBTAP00000033407/1-878 VENYWPDDSV FPKPFVQKYC LMGVQDSYTD FHIDFGGTSV WYHVLWGEKV bmy_04332T0/1-797 VENYWPDDSV FPKPFVQKYC LMGVQDSYTD FHIDFGGTSV WYHVLWGEKV BACU006742/1-720 VENYWPDDSV FPKPFVQKYC LMGVQDSYTD FHIDFGGTSV WYHVLWGEKV 301 350 ENSP00000380692/1-941 FYLIKPTDEN LARYESWSSS VTQSEVFFGD KVDKCYKCVV KQGHTLFVPT ENSTTRP00000009023/1-941 FYLIKPTDDN LALYESWSSS VTQSEVFFGD KVDKCYKCVV KQGHTLFVPT ENSBTAP00000033407/1-878 FYLIKPTDDN LALYESWSSS VTQSEVFFGD KVDKCYKCVV KQGHTLFVPT bmy_04332T0/1-797 FYLIKPTDDN LALYESWSSS VTQSEVFFGD KVDKCYKCVV KQGHTLFVPT BACU006742/1-720 FYLIKPTDDN LALYESWSSS VTQSEVFFGD KVDKCYKCVV KQGHTLFVPT 351 400 ENSP00000380692/1-941 GWIHAVLTSQ DCMAFGGNFL HNLNIGMQLR CYEMEKRLKT PDLFKFPFFE ENSTTRP00000009023/1-941 GWIHAVLTSQ DCMAFGGNFL HNLNIGMQLR CYEMEKRLKT PDLFKFP-LE ENSBTAP00000033407/1-878 GWIHAVLTSQ DCMAFGGNFL HNLNIGMQLR CYEMEKRLKT PDLFKFPFFE bmy_04332T0/1-797 GWIHAVLTSQ DCMAFGGNFL HNLNIGMQLR CYEMEKRLKT PDLFKFPFFE BACU006742/1-720 GWIHAVLTSQ DCMAFGGNFL HNLNIGMQLR CYEMEKRLKT PDLFKFPFFE 401 450 ENSP00000380692/1-941 AICWFVAKNL LETLKELRED GFQPQTYLVQ GVKALHTALK LWMKKELVSE ENSTTRP00000009023/1-941 XXXXXXXXXX XXXXXXLRED GFQPQTYLVQ GVKALHTALK LWMKKELVSE ENSBTAP00000033407/1-878 AICWFVAKNL LETLKELRED GFQPQTYLVQ GVKALHTALK LWMKKELVSE bmy_04332T0/1-797 AICWFVAKNL LETLKELRED GFQPQTYLVQ GVKALHTALK LWMKKELVSE BACU006742/1-720 AICWFVAKNL LETLKELRED GFQPQTYLVQ GVKALHTALK LWMKKELVSE 451 500 ENSP00000380692/1-941 HAFEIPDNVR PGHLIKELSK VIRAIEEENG KPVKSQGIPI VCPVSRSSNE ENSTTRP00000009023/1-941 HAFEIPDNVR PGHLIKELSK VIRAIEEENG KPVKSQGIPT VCPVSRSSNE ENSBTAP00000033407/1-878 HAFEIPDNVR PGHLIKELSK VIRAIEEENG KPVKSQGIPS VCPVSRSSSE bmy_04332T0/1-797 HAFEIPDNVR PGHLIKELSK VIRAIEEENG KPVKSQGIPT VCPVSRSSNE BACU006742/1-720 HAFEIPDNVR PGHLIKELSK VIRAIEEENG KPVKSQGIPT VCPVSRSSNE 501 550 ENSP00000380692/1-941 ATSPYHSRRK MRKLRDHNVR TPSNLDILEL HTREVLKRLE MCPWEEDILS ENSTTRP00000009023/1-941 AASPYHSRRR MRKLRDHNVR TPSNLDILEL HTREVLRRLE MCPWEEDILS ENSBTAP00000033407/1-878 AASPYHSRRR MRKLRDHNVR TPSNLDILEL HTREVLRRLE MCPWEEDILS bmy_04332T0/1-797 AASPYHSRRR MRKLRDHNVR TPSNLDILEL HTR------- -----EDILS BACU006742/1-720 AASPHHSRRR MRKLRDHNVR TPSNLDILEL HTR------- -----EDILS 551 600 ENSP00000380692/1-941 SKLNGKFNKH LQPSSTVPEW RAKDNDLRLL LTNGRIIKDE RQPFADQSLY ENSTTRP00000009023/1-941 SKLNGKFNKH LQPSSTVPEW RAKDNDLRLL LTNGRIIKDE RQPFTDQSLY ENSBTAP00000033407/1-878 SKLNGKFNKH LQPSSTVPEW RVKDNDLRLL LTNGRIIKDE RQPFTDQSLY bmy_04332T0/1-797 SKLNGKFNKH LQPSSTVPEW RAKDNDLRLL LTNGRIIKDE RQPFADRSLY BACU006742/1-720 SKLNGKFNKH LQPSSTVPEW RAKDNDLRLL LTNGRIIKDE RQPFADQSLY 601 650 ENSP00000380692/1-941 TADSENEEDK RRTKKAKMKI EESSGVEGVE HEESQKPLNG FFTRVKSELR ENSTTRP00000009023/1-941 TADSENEEDR RRTKKAKVKM EESSGIEGVE NEASQKPLNR FLTSVKSELR ENSBTAP00000033407/1-878 TADSENEEDK RRTKKAKVKM EESSGIEGVE NEESQKPLNR FLTSVKSELR bmy_04332T0/1-797 TADSENEEDK RRTKKAKVKM EESSGIEGVE NEASQKPLNR FLTSVKSELR BACU006742/1-720 TADSENEEDK RRTKKAKVKM EESSGIEGVE NEVSQKPLNR FLTSVKSELR 651 700 ENSP00000380692/1-941 SRSSGYSDIS ESEDSGPECT ALKSIFTTEE SESSGDEKKQ EITSNFKEES ENSTTRP00000009023/1-941 NRSSEYSDIS DSEDSGPDCT ALKNNFTTEE SESSGDEKKQ EITSNFKEES ENSBTAP00000033407/1-878 NRSSEYSDIS DSEDSGPDCT VLKNNFTTEE SESSGDEKKQ EVTSNFKEES bmy_04332T0/1-797 NRSSEYSDIS DSEDSGPDCT ALKNNFTTEE SESSGDEKKQ EITSNFKEES BACU006742/1-720 NRSSEYSDIS DSEDSGPDCT ALKNNFTTEE SESSGDEKKQ EITSNFKEES 701 750 ENSP00000380692/1-941 NVMRNFLQKS QKPSRSEIPI KRECPTSTST EEEAIQGMLS MAGLHYSTCL ENSTTRP00000009023/1-941 NLMRSFLQKS QKPPRSEIPV KRECPTSTST EEEAIQGMLS MAGLHYSTCL ENSBTAP00000033407/1-878 NVMRNFLQKS QKPSRSEIPV KRECPTSTST EEEAIQGMLS MAGLHYSTCL bmy_04332T0/1-797 NVMRSFLQKS QKPSRSEIPV KRECPTSTST EEEAIQGMLS MAGLHYSTCL BACU006742/1-720 NVMRSFLQKS QKPSRSEIPV KRECPTSTST EEEAIQGMLS MAGLHYSTCL 751 800 ENSP00000380692/1-941 QRQIQSTDCS GERNSLQDPS SCHGSNHEVR QLYRYDKPVE CGYHVKTEDP ENSTTRP00000009023/1-941 QRQIQSTDCG GERHSLQDPS SCRSSNHEVR QLYRCDKPVE SGYHVKTEDQ ENSBTAP00000033407/1-878 QRQIQSTDCG GERPSLQDPS GCHSSNHEVR QLYRCDKTVE SGYHVKTEDQ bmy_04332T0/1-797 QRQIQSTDCG GERHSLQDPS SCHSSNHEVR QLYRCDKPVE SGYHVKTEDQ BACU006742/1-720 QRQIQSTDCG GERHSLQDPS SCHSSNHEVR QLYRCDKPVE ---------- 801 850 ENSP00000380692/1-941 DLRTSSWIKQ FD-TSRFHPQ DLSRSQKCIR KEGSSEISQR VQSRNYVDSS ENSTTRP00000009023/1-941 DLRSSSWIKQ FDTTSRFNRQ DLSRGQKCIR KEVSSEISQK VQSRNSVDSS ENSBTAP00000033407/1-878 DLRSSSWIKQ FDTTSRFNLQ DLNRGQKCIK KEVSSEISHK VQSRNSVDSS bmy_04332T0/1-797 DLRSSSWIKQ FDTTSRFNRQ DLSRGQKCIR KEVSSEISQK VQSRNSVDSS BACU006742/1-720 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000380692/1-941 GSSLQNGKYM QNSNLTSGAC QISNGSLSPE RPVGETSFSV PLHPTKRPAS ENSTTRP00000009023/1-941 GSSPQNGKYM QSSSLMSGAC QISNGSASPE RPVGETSFSV PLHPTKRPAS ENSBTAP00000033407/1-878 GSSLQNAKYT QSSSLISGAC QLSNGSISPE RPVGETSFSV PLHPTKRPAS bmy_04332T0/1-797 GSSPQNGKYM QSSSLMSGAC QISNGSISPE RPV------- ---------- BACU006742/1-720 ---------- -SVNVMP--- ---------- ---------- ---------- 901 950 ENSP00000380692/1-941 NPPPISNQAT KGKRPKKGMA TAKQRLGKIL KLNRNGHARF FV ENSTTRP00000009023/1-941 NPPPISNQAT KGKRPKKGMA TAKQRLGKIL KLNRNGHARF FV ENSBTAP00000033407/1-878 NPPPISNQAT KGKRPKKGMA TAKQRLGKIL KLNRNGHARF FV bmy_04332T0/1-797 ---------- --NVQKKEWQ QPNNVLGRSL N--------- -- BACU006742/1-720 ---------- ---------- ---------- ---------- --