KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:13 2014 Check: 00 .. Name: ENSP00000359596/1-943 Len: 943 Check: 4489 Weight: 1.00 Name: ENSBTAP00000033425/1-903 Len: 943 Check: 7165 Weight: 1.00 Name: ENSTTRP00000000004/1-943 Len: 943 Check: 4180 Weight: 1.00 Name: bmy_16490T0/1-916 Len: 943 Check: 1994 Weight: 1.00 Name: BACU004618/1-886 Len: 943 Check: 7775 Weight: 1.00 // 1 50 ENSP00000359596/1-943 MTQRSIAGPI CNLKFVTLLV ALSSELPFLG AGVQLQDNGY NGLLIAINPQ ENSBTAP00000033425/1-903 MTHRDSEGRV CSLKFVTLLV AFSPEFLFLG AGLQLRDNGY DGLLVAVNPQ ENSTTRP00000000004/1-943 MTHGDSAGPV CSLKFVTLLV VLGPELLFLG AGVQLQENGY NGLLVAINPQ bmy_16490T0/1-916 MTHGDSAGPV CSLKFVTLLV VLGPELLFLG AGVQLQENGY NGLLVAINPQ BACU004618/1-886 MTHGDSAGPV CSLKFVTLLV VLGPELLFVG ARVQLQENGY NGLLVAINPQ 51 100 ENSP00000359596/1-943 VPENQNLISN IKEMITEASF YLFNATKRRV FFRNIKILIP ATWKANNNSK ENSBTAP00000033425/1-903 VSEDQNLIPN IKEMITEASF YLFNATKRRV FFRNVKILIP ATWKASNYSK ENSTTRP00000000004/1-943 VSEDQKLIPN IKEMITEASY YLFNATKRRV FFRNIKILIP ATWKANNYSK bmy_16490T0/1-916 VSEDQNLIPN IKEMITEASY YLFNATKRRV FFRNIKILIP ATWKANNYSK BACU004618/1-886 VSEDQNLIPN IKEMITEASY YLFNATKRRV FFRNIKILIP ATWKANNYSK 101 150 ENSP00000359596/1-943 IKQESYEKAN VIVTDWYGAH GDDPYTLQYR GCGKEGKYIH FTPNFLLNDN ENSBTAP00000033425/1-903 VKQESYEKAN VIVTDWYGAH GDDPYTLQYR GCGKEGKYIH FTSKFLLNDG ENSTTRP00000000004/1-943 VKQESYEKAN VIVTDWYGAH GDDPYTLQYR GCGKEGKYIH FTLDFLLNDD bmy_16490T0/1-916 VKQESYEK-- ---------- ---------- -----GKYIH FTPDFLLNDD BACU004618/1-886 VKQESYEKAN VIVTDWYGAH GDDPYTLQYR GCGEEGKYIH FTPDFLLNDD 151 200 ENSP00000359596/1-943 LTAGYGSRGR VFVHEWAHLR WGVFDEYNND KPFYINGQNQ IKVTRCSSDI ENSBTAP00000033425/1-903 LTAGYGSRGR VFVHEWAHFR WGVFDEYNNE KPFYINGQSQ IEVTRCSSDI ENSTTRP00000000004/1-943 LTAVYGSRGR VFVHEWAHLR WGVFDEYNNE KPFYVNGQNQ IKVTRCSSDI bmy_16490T0/1-916 LTAGYGSRGR VFVHEWAHLR WGVFDEYNNE KPFYINGQNQ IEVTRCSSDI BACU004618/1-886 LTAGYGSRGR VFVHEWAHLR WGVFDEYNNE KPFYINGQNQ IEVTRCSSDI 201 250 ENSP00000359596/1-943 TGIFVCEKGP CPQENCIISK LFKEGCTFIY NSTQNATASI MFMQSLSSVV ENSBTAP00000033425/1-903 AGIFVCEKGP CPQENCIISK IFQEGCMFIY NSTQNATSSI MFMQSLSSVV ENSTTRP00000000004/1-943 TGIFLCERGP CPQENCIISK ILQEGCMFIY NSTQNATASI MFMQSLSSVV bmy_16490T0/1-916 TGIFLCERGP CPQENCVISK IFKEGCMXIY NSTQNATASI MFMQSLSSVV BACU004618/1-886 TGIFLCEGGP CPQENCVISK IFKEGCMFIY NSTQNATASI MFMQSLSSVV 251 300 ENSP00000359596/1-943 EFCNASTHNQ EAPNLQNQMC SLRSAWDVIT DSADFHHSFP MNGTELPPPP ENSBTAP00000033425/1-903 EFCNASTHNQ EAPNMQNQMC SLRSVWDVIT DSDDFVNSLP MSGTELPPPP ENSTTRP00000000004/1-943 EFCNASTHNQ EAPNLQNQMC SLRSTWDVIT DSDDFNNSFP MKGTELPPPP bmy_16490T0/1-916 EFCNASTHTQ EAPNLQNQMC SLRSTWDVIT DSDDFNNSFP MKGTELPPPP BACU004618/1-886 EFCNASTHTQ EAPNLQNQMC SLRSTWDVIT DSDDFNNSFP MKGTELPPPP 301 350 ENSP00000359596/1-943 TFSLVQAGDK VVCLVLDVSS KMAEADRLLQ LQQAAEFYLM QIVEIHTFVG ENSBTAP00000033425/1-903 TFSLAQAGDR VVCLVLDVSS KMAEADRLLQ LQQAAEFYLM QIVEIHTFVG ENSTTRP00000000004/1-943 TFSLIQAGDK VVCLVLDVSS KMAKADRFLQ LQQAAEFYLM QIVEIHTFVG bmy_16490T0/1-916 TFSLVQAGDK VVCLVLDVSS KMAKADRLLQ LQQAAEFYLM QIVEIHTFVG BACU004618/1-886 TFSLVQAGDK VVCLVLDVSS KMAKADRLLQ LQQAAEFYLM QIVEIHTFVG 351 400 ENSP00000359596/1-943 IASFDSKGEI RAQLHQINSN DDRKLLVSYL PTTVSAKTDI SICSGLKKGF ENSBTAP00000033425/1-903 IASFHSKGEI RAQLHQINND DDRKLLVSYL PVAVSAEAET SVCSGLKKGF ENSTTRP00000000004/1-943 IASFNSKGTI RAQLHQINND DDRKLLVSYL PTTVSAEAET SICSGLKKGF bmy_16490T0/1-916 IASFNSKGTI RAQLHQINND DDRKLLVSYL PATVSAEAET SVCSGLKKGF BACU004618/1-886 IASFNSKGTI RAQLHQINND DDRKLLVSYL PATVSAEAET SVCSGLKKGF 401 450 ENSP00000359596/1-943 EVVEKLNGKA YGSVMILVTS GDDKLLGNCL PTVLSSGSTI HSIALGSSAA ENSBTAP00000033425/1-903 EVVEKLNGKA FGSVMILVTS GDDEHISNCF LTALSSGSTI HTIALGSSTV ENSTTRP00000000004/1-943 EMVEKLNGKA FGSVMILVTS GDDEHVTNCF LTVLSSGSTI HTIALGSSAV bmy_16490T0/1-916 EMVEKLNGKA FGSVMILVTS GDDEHITNCF LTVLSSGSTI HTIALGSSAV BACU004618/1-886 EMVEKLNGKA FGSVMILVTS GDDEHITNCF LTVLSSGSTI HTIALGSPAV 451 500 ENSP00000359596/1-943 PNLEELSRLT GGLKFFVPDI SNSNSMIDAF SRISSGTGDI FQQHIQLEST ENSBTAP00000033425/1-903 KNLEELSHLT GGLRFFVPDK SNANSMIDAF SRISSGTGDI FQQHIQM--- ENSTTRP00000000004/1-943 KNLEELSHLT GGLKFFVPDK SNSNSMLDAF SRISSGTGDI FQQHIQLESI bmy_16490T0/1-916 KNLEELSHLT GGSKFFVPDK SNSNSMLDAF SRISSGTGDI FQQHIQLESI BACU004618/1-886 KNLEELSHLT GGLQFFVPDK SNSNSMLDAF SRISSGTGDI FQQHIQLESI 501 550 ENSP00000359596/1-943 GENVKPHHQL KNTVTVDNTV GNDTMFLVTW QASGPPEIIL FDPDGRKYYT ENSBTAP00000033425/1-903 ---------- ---------- ---------- -------IIL FDPNGRKYNM ENSTTRP00000000004/1-943 GEYVKRHHQL KNTVTVDHSV GNDTTFLVTW QTSGPPEIVL FDPNGRKYYT bmy_16490T0/1-916 GEYVKPHHQL KNTVTVDHSV GNDTTFLVTW QTSGPPEIVL FDPNGRKYYT BACU004618/1-886 GEYVKPHHQL KNTVTVDHSV GNDTTFLVTW QTSGPPEIVL FDPNGRKYNT 551 600 ENSP00000359596/1-943 NNFITNLTFR TASLWIPGTA KPGHWTYTLN NTHHSLQALK VTVTSRASNS ENSBTAP00000033425/1-903 DDFIINLPFR TAHLWIPGTA KPGLWTYTLN NTHHSPQALK VTVTSRASRS ENSTTRP00000000004/1-943 DDFTTNLAFR TARLWIPGTA KPGLWTYTLN NTHHSPQALK VTVTSGASRS bmy_16490T0/1-916 DDFTTNLAFR TARLWIPGTA KPGLWTYTLN NTHHSPQGLK VTVTSGASHS BACU004618/1-886 DDFTTNLAFR TARLWIPGTA KPGLWTYTLN NTHHSPQALK VTVTSGASRS 601 650 ENSP00000359596/1-943 AVPPATVEAF VERDSLHFPH PVMIYANVKQ GFYPILNATV TATVEPETGD ENSBTAP00000033425/1-903 AMPPATVEAF VERDSTHFPH PLMIYAIVRK GFYPILNATV IATIEPETAD ENSTTRP00000000004/1-943 AVPPATVEAF VERDSTHFPH PVTIYAIVRK GFYPILNATV TATVESETAD bmy_16490T0/1-916 AVLPATVEAF VERDSTHFPH PVTIYAIVRK GFYPILNATV TATIESETAD BACU004618/1-886 AVLPATVEAF VERDSTHFPH PVTIYAIVRK GFYPILNATV TATIESETAD 651 700 ENSP00000359596/1-943 PVTLRLLDDG AGADVIKNDG IYSRYFFSFA ANGRYSLKVH VNHSPSISTP ENSBTAP00000033425/1-903 PVMLKLFDDG AGADIIKNDG IYSRYFFSFP VNGRYSLKVH VNHSPSISTL ENSTTRP00000000004/1-943 PVTLKLFDDG AGADVIKNDG IYSRYFFSFA VNGRYSLKVH VNHSPSISAL bmy_16490T0/1-916 PVTLKLFDDG AGADVIKNDG IYSRYFFSFA VNGRYSLKVR VNHSPSISAL BACU004618/1-886 PVTLKLFDDG A--------- ---------- ---------- ---------- 701 750 ENSP00000359596/1-943 AHSIPGSHAM YVPGYTANGN IQMNAPRKSV GRNEEERKWG FSRVSSGGSF ENSBTAP00000033425/1-903 AHSIPGSHAM YAPGYITNGN IQMNAPRKSV GRSEEEQKWG FSRISSGGSF ENSTTRP00000000004/1-943 AHSIPGSHAM YVPGYITNGN IQMNAPRKSV DRREEEQKLG FSRISSGGSF bmy_16490T0/1-916 VHSIPGSHAM YVPGYITNGN IQMNAPRKSV GRREEEQKWG FSRVSSGGSF BACU004618/1-886 ---------- --------GN IQMNAPRKSV GRREEEQKWG FSRVSSGGSF 751 800 ENSP00000359596/1-943 SVLGVPAGPH PDVFPPCKII DLEAVKVEEE LTLSWTAPGE DFDQGQATSY ENSBTAP00000033425/1-903 SVLGVPAGPH PDVFPPCKII DLEAVKEEEE VILSWTAPGE DLDQGQANSY ENSTTRP00000000004/1-943 FVLGVPADPH PDVFPPCKII DLEAVKSEEE VTLSWTAPGG DFDQGQANSY bmy_16490T0/1-916 FVLGVPADPH PDVFPPCKII DLEAVKVEEE VTLSWTAPGE DFDQGQANSY BACU004618/1-886 FVLGIPADPH PDVFPPCKII DLEAVKVEEE VTLSWTAPGE DFDQGQANSY 801 850 ENSP00000359596/1-943 EIRMSKSLQN IQDDFNNAIL VNTSKRNPQQ AGIREIFTFS PQISTNGPEH ENSBTAP00000033425/1-903 EIRVSKSLQN IQDDFNNAIL VNTSKLNPQQ AGTKEIFKFS SELFTNGPEY ENSTTRP00000000004/1-943 EIRVSKSLQN IQDDFNNAIL VNTSKLNPQQ AGTKEIFTFS SELFTNGLEH bmy_16490T0/1-916 EIRVSKSLQN IQDDFNNAIL VNTSKLNPQQ AGTKEIFTFS SELFTNGPEH BACU004618/1-886 EIRVSKSLQN IQDDFNNAIL VNTSKLNPQQ AGTKEIFTLS SELFTNGPEH 851 900 ENSP00000359596/1-943 QPNGETHESH RIYVAIRAMD RNSLQSAVSN IAQAPLFIPP NSDPVPARDY ENSBTAP00000033425/1-903 QPDGEAQKSH RIYVAIRAVD RNSLKSAISN IAQASLLILP NSSPVLDRDN ENSTTRP00000000004/1-943 QPDGETQKSL RIYVAIRAVD RNSLKSAVSN VAQASLLIPP NSAPVFARDD bmy_16490T0/1-916 QPDGETQKSH RIYVAIRAVD RNSLKSAVSN VAQASLLIPP NSTPVFARDY BACU004618/1-886 QPDGETQKRH RIYVAIRAVD RNSLKSAVSN VAQASLLIPP NSTPVFARDY 901 950 ENSP00000359596/1-943 LILKGVLTAM GLIGIICLII VVTHHTLSRK KRADKKENGT KLL ENSBTAP00000033425/1-903 LILKGVLTAI GVIGIICLTI VVTHCVLNRK KRAGKKENET KLL ENSTTRP00000000004/1-943 FMLKGVLTAM GFIGIICLII VVTHCVLNRK TRADKKENET KLL bmy_16490T0/1-916 LILKGVLTAM GFTGIICLTI VVTHCVLNRK KRADKKENET KLL BACU004618/1-886 LILKGALTAM GFTGIICLTI VVTHCVLNRK KRADKKENET KLL