KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:14 2014 Check: 00 .. Name: ENSP00000212355/1-851 Len: 878 Check: 4409 Weight: 1.00 Name: ENSTTRP00000013299/1-848 Len: 878 Check: 4536 Weight: 1.00 Name: ENSBTAP00000033435/1-813 Len: 878 Check: 7742 Weight: 1.00 Name: bmy_09083T0/1-721 Len: 878 Check: 9375 Weight: 1.00 Name: BACU006371/1-707 Len: 878 Check: 7731 Weight: 1.00 // 1 50 ENSP00000212355/1-851 ---------- MTSHYVIAIF ALMSSCLATA GPEPGALCEL SPVSASHPVQ ENSTTRP00000013299/1-848 ---------- MASHCVIAMF ALMSSCLATA GPEPSAQCEL SPVNASHPVQ ENSBTAP00000033435/1-813 ---------- ---------- ---------- ---------- ---------- bmy_09083T0/1-721 MGVTEGFGDA ERRFPLPIEK AGLVSEAPGL GPEPSTQCEL SPVNASHPVQ BACU006371/1-707 ---------- ---------- ---------- ---------- --VSEGSVVH 51 100 ENSP00000212355/1-851 ALMESFTVLS GCASRGTTGL PQ-EVHVLNL RTAGQGPGQL QREVTLHLNP ENSTTRP00000013299/1-848 ALMESFTVLS GCASRGTVGL PQ-EVHVLNL RTADQGPGQP QREVTLHLNP ENSBTAP00000033435/1-813 --MESFTALS GCASRGTVGL PQ-EVHVLNL RAADQGPGQP QREVTLHLNP bmy_09083T0/1-721 ALMESFTVLS GCASRGTVGL PQ-EVHVLNL RTADQGPGQP QREVTLHLNP BACU006371/1-707 FSSGNFSLSA ETEERSF--- PHGNEHLLNW ARKEYGAVTS FTELKIARN- 101 150 ENSP00000212355/1-851 ISSVHIH-HK SVVFLLNSPH PLVWHLKTER LATGVSRLFL VSEGSVVQFS ENSTTRP00000013299/1-848 ISSVYIH-HK PVVFLLNSPQ PLVWHLKTER LAIGISRLFL VSEGSVVHFS ENSBTAP00000033435/1-813 ISSVHIH-HK PVVFLLNSPQ PLVWHLKTER LAAGVSRLFL VSEGSLVHFS bmy_09083T0/1-721 ISSVYIH-HK PVVFLLNSPQ PLVWHLKTER LA-------- ---------- BACU006371/1-707 ---IYIKVGE DQVFP---PT ---------- ---------- ---------- 151 200 ENSP00000212355/1-851 SANFSLTAET EERNFPHGNE HLLNWARKEY GAVTSFTELK IARNIYIKVG ENSTTRP00000013299/1-848 SGNFSLSAET EERSFPHGNE HLLNWARKEY GAVTSFTELK IARNIYIKVG ENSBTAP00000033435/1-813 SRNFSLSAET EERSFPHGNE HLLNWARKEY GAVTSFTELK IARNIYIKVG bmy_09083T0/1-721 ---------- ---------- ---------- ---------- ---------- BACU006371/1-707 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000212355/1-851 E--DQVFPPK CNIGKNFLSL NYLAEYLQPK AAEGCVMSSQ PQNEEVHIIE ENSTTRP00000013299/1-848 E--DQVFPPT CNIGKNFLSL NYLAGYLQPK AAEGCVISSQ PRDKEVHIIE ENSBTAP00000033435/1-813 EVSDQVFPPT CNIGKNFLSL NYLAEYLQPK AAEGCVMSSQ PQDKEVHIIE bmy_09083T0/1-721 ---------- IGVSRLFLGW HW-------- ---GCH-GAW SQDATI---- BACU006371/1-707 ---------- CNIGKNFLSL NYLAEYLQPK AAEG------ ---------- 251 300 ENSP00000212355/1-851 LITPNSNPYS --AFQVDITI DIRPSQEDLE VVKNLILILK CKKSVNWVIK ENSTTRP00000013299/1-848 LITPNSNPYS --AFQVDIII DIRPSRKDP- VVKDLILILK CKSV--WVIK ENSBTAP00000033435/1-813 LITPNSNPYS HSAFQVDIII DIRPSRKDPE VVKNLILILK CKKSVNWVIK bmy_09083T0/1-721 ---------- --AFQVDIII DIRPSRKDPE VVKDLILILK CKKSVNWVIK BACU006371/1-707 ---------- --AFQVDIII DIRPSRKDPE VVKDLILILK CKKSVNWVIK 301 350 ENSP00000212355/1-851 SFDVKGSLKI IAPNSIGFGK ESERSMTMTK SIRDDIPSTQ GNLVKWALDN ENSTTRP00000013299/1-848 SFDINANLKV IAPNSIGFGK ESERSMIMTK SIRDDIPSTQ ESLVKWALDN ENSBTAP00000033435/1-813 SFDIKGNLKA IAPNSIGFGK ESERSMIMTK SKRDDIPSTQ ESLVKWALDN bmy_09083T0/1-721 SFDIKGNLKV IAPNSIGFGK ESERSMIMTK SIRDDIPSTQ ESLVKWALDN BACU006371/1-707 SFDIKGNLKV IAPNSIGFGK ESERSMIMTK SIRDDIPSTQ ESLVKWALDN 351 400 ENSP00000212355/1-851 GYSPITSYTM APVANRFHLR LENNA-EEMG DEEVHTIPPE LRILLDPGAL ENSTTRP00000013299/1-848 GCSPVTSYTV APVANRFHLR LENNA-EEMR DEEVHTIPPE LRILLDPGNL ENSBTAP00000033435/1-813 GYSPVTSYTV APMANRFHLR LESNASEEMR DEEVHTVPPE LRILLGPGTL bmy_09083T0/1-721 GCSPVTSYTV APVANRFHLR LENNA-EEMR DEEVHTIPPE LRILLDPGTL BACU006371/1-707 GCSPVTSYTV APVANRFHLR LENNA-EEMR DEEVHTIPPE LRILLDPGTL 401 450 ENSP00000212355/1-851 PALQNPPIRG GEGQNGGLPF PFPDISRRVW NEEGEDGLPR PKDPVIPSIQ ENSTTRP00000013299/1-848 PALDNPRIRG RGGQNGGFPF PFPDISRRGW KEGGEDGIPP PKDPVIPSIQ ENSBTAP00000033435/1-813 PALDNPPIRG GGSRNGGFPF PFPDISRRGR KEGGEDGILR PKDPVIPGI- bmy_09083T0/1-721 PALDNPPIRG RGGRNGGFPF PFPDISRTGW KEGGEDGIPR PKDPVIPSIQ BACU006371/1-707 PALDNPPIRG RGGRNGGFPF PFPDISRTGW KEGGEDGIPR PKDPVIPSIQ 451 500 ENSP00000212355/1-851 LFPGLREPEE VQGSVDIALS VKCDNEKMIV AVEKDSFQAS GYSGMDVTLL ENSTTRP00000013299/1-848 LFPGPREAEE VQGSMDVALS VKCDNEKMTV AIEKDSFQAR GYSGMELTLL ENSBTAP00000033435/1-813 LFPDPREPEE VQGSTDVALS VKCDNEKMTV AVDKDSFQAS GYSGMELTLL bmy_09083T0/1-721 LFPGPREAEE VQGRMDVALS VKCDNEKMTV AIEKDSFQAS GYSGVELTLL BACU006371/1-707 LFPGPREAEE VQGRMDVALS VKCDNEKMTV AIEKDSFQAS GYSGMELTLL 501 550 ENSP00000212355/1-851 DPTCKAKMNG THFVLESPLN GCGTRPRWSA LDGVVYYNSI VIQVPALGDS ENSTTRP00000013299/1-848 DPTCKAKMNG THFILESPLN GCGTRHRRSV PYGVVYYNSI VIQVPPPGDS ENSBTAP00000033435/1-813 DPTCKAKTND THFILESPLN GCGTRLRRAA PDGVVYYNSI VIQIPPSGDS bmy_09083T0/1-721 DPTCKAKMNG THFILESPLN GCGTRHRRSA PYGVVYYNSI VIQVQPPGDS BACU006371/1-707 DPTCKAKMNG THFILESPLN GCGTRHRRSA PYGVVYYNSI VIQVPPPGDS 551 600 ENSP00000212355/1-851 SGWPDGYEDL ESGDNGFPGD MDEGDASLFT RPEIVVFNCS LQQVRNPSSF ENSTTRP00000013299/1-848 SGWPDGYEDL ESGDNGFPGD TDEGDTSFFS RPEIVVFNXX XXXXXXXXXX ENSBTAP00000033435/1-813 SGWPDGYEDL ESGDNGFPGD MDEGDTSFFS RLEIVVFNCS LRQVGNPRTF bmy_09083T0/1-721 SGWPDGYEDL ESGDNGFPGD TDGGDTSFFS RPEIVVFNCS LRQVGNPSSF BACU006371/1-707 SGWPDGYEDL ESGDNGFPGD TDEGDTSFFS RPEIVVFNCS LRQVGNPSSF 601 650 ENSP00000212355/1-851 QEQPHGNITF NMELYNTDLF LVPSQGVFSV PENGHVYVEV SVTKAEQELG ENSTTRP00000013299/1-848 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV SVTKADQELG ENSBTAP00000033435/1-813 QDEPNRNVTF NMELYNTDLF LVPSQGVFSV AENGHVYVEV SVTKADQELG bmy_09083T0/1-721 QDPPNRNVTF NMELYNTDLF LVPSQGVFSV AENGHVFVEV SVTKADQELG BACU006371/1-707 QDPPNRNVTF NMELYNTDLF LVPSQGVFSV AENGHVFVEV SVTKADQELG 651 700 ENSP00000212355/1-851 FAIQTCFISP YSNPDRMSHY TIIENICPKD ESVKFYSPKR VHFPIPQADM ENSTTRP00000013299/1-848 FAIQTCFISP YSNPDRMSDY TIIENICPKD ESVKFYNPKR VHFPIPQAEI ENSBTAP00000033435/1-813 FAIQTCFISP YSNPDRMSDY TIIENICPKD ESVKFYNPKR VHFPIPQAEI bmy_09083T0/1-721 FAIQTCFISP YSNPDRMSDY TIIENICPKD ESVKFYNPKR VHFPIPQAEI BACU006371/1-707 FAIQTCFISP YSNPDRMSDY TIIENICPKD ESVKFYNPKR VHFPIPQAEI 701 750 ENSP00000212355/1-851 DKKRFSFVFK PVFNTSLLFL QCELTLCTKM EKHPQKLPKC VPPDEACTSL ENSTTRP00000013299/1-848 DKKRFSFVFK PIFNTSLLFL QCELTLCTKR EKDPQKLPKC VLPDEACTSL ENSBTAP00000033435/1-813 DKKRFSFVFK PVFNTSLLFL QCELTLCTKK EKDPQKLPKC VLPDEACTSL bmy_09083T0/1-721 DKKRFSFVFK PIFNTSLLFL QCELTLCTKK EKDPQKLPKC VLPDEACTSL BACU006371/1-707 DKKRFSFVFK PIFNTSLLFL QCELTLCTKK EKDPQKLPKC VLPDEACTSL 751 800 ENSP00000212355/1-851 DASIIWAMMQ NKKTFTKPLA VIHHEAESK- ---------E KGPSMKEPNP ENSTTRP00000013299/1-848 DASMIWAMMQ NKKTFTKPLA VIHHEVQFK- ---------E TGPSIKKPIP ENSBTAP00000033435/1-813 DASMIWAMMQ NKKTFTRPLA VIHHEVPFK- ---------E TGPSIKEPIP bmy_09083T0/1-721 DASMIWAMMQ NKKTFTKPLA VIHHEVQFK- ---------E TGPSIKKPIP BACU006371/1-707 DASMIWAMMQ NKKTFTKPLA VIHHEVQFKE RIVIYVFVSE TGPSIKKPIP 801 850 ENSP00000212355/1-851 ISPPIFHGLD TLTVMGIAFA AFVIGALLTG ALWYIYSHTG ETAGRQQVPT ENSTTRP00000013299/1-848 VSPPIFHGLD TLTVMGIAFA AFVIGALLTG ALWYIYSHTG ETAGRQQVPT ENSBTAP00000033435/1-813 ITPQIFHGLD TLTVMGIAFA AFVIGALLTG ALWYIYSHTG ETAGRQQVPT bmy_09083T0/1-721 VPPPIFHGLD TLTVMGIAFA AFVIGALLTG ALWYIYSHTG ---------- BACU006371/1-707 ASPPIFHGLD TLTVMGIAFA AFVIGALLTG ALWYIYSHTG ETAGRQQVPT 851 900 ENSP00000212355/1-851 SPPASENSSA AHSIGSTQST PCSSSSTA ENSTTRP00000013299/1-848 SPPASENSSA AHSIGSTQST PCSSSSTA ENSBTAP00000033435/1-813 SPPASENSSA AHSIGSTQST PCSSSSTA bmy_09083T0/1-721 ---------- ---------- -------- BACU006371/1-707 SPPASENSSA AHSIGSTQST PCSSSSTA